Carg17495 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg17495
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	methyl-CpG-binding domain-containing protein 11-like
Location	Carg_Chr12: 11275825 .. 11280185 (-)
RNA-Seq Expression	Carg17495
Synteny	Carg17495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTAATGCAATTGCTTGATATTGATGGCAACAAGGCCTTCACTGAATCCAAAATTGGGTTAATCACCAAAGGTTTTCGAGGAAACATCACGAACCAGACTATTGAGTAGACATAAGAACATGAGTCTTGGTTCAAAATGGATAAAATTATTTTTGAAGTTTTTAAAAGAAATTATTTAAATTTTCTTCAAATACACAAAAGAAACTATAATTCTAATAACAGAAAGAAAAAGAAAAAAACTCAAGATTTTGAATTTTTTAAATCATGATTCTCTTCCTTTGCTTCTATATATGGTCATCTTCTTTTCTAAACCAATTTAGATAAAGAATATATATTTATGAAGTTATATTTTCTAAATAAATTAGTGCCAAACATATTATCTCAACATAGTATGAATAATGGATATAAGTTGATTTGAACGTCATTTCTATTGATTTGTGCCCCAATCTGCCACTCTTTTTGGATCATGATGTTTGGCTTGACCAATGACCAATCATCTCTTAAATATCTCATGGATATATTCGGATATTTCCTTCCCAAAATTATTCTAGTGTTTATTGAGGTCATACTTGTCAACGGCTCAGGGTTACTAGCCCAACTTTGTTCTCTGTTTTGGATGTTTTGATCGATGATCTGGTGGCTAATGTCAAGAAGTGCACCTTTTCACTGCCTCAGATTGAATTTGTAGATGATATGGTGTCCGAGTAAGGTGGATGTTCATGGCTGTAAAATCCAAAATAAGTTGAACTGGTCATCTCCCTGCAACCAGGCTTACATGTTTCCACTGAAAATCTGTGGCCGTTTATGGTTTGACTGCCTTCTCCCAACAGTTAAAAGTGATAATGAGTCGAATCCTAAGGCTAGGGAAAGCTTTCGATGTCTCAAACACACTAAGATCAATGTGCTTCTGGTTGCCTTACCAGACTTCTCAAAGCCATTCCTTGCAGAAAGGAATGGTATAGGTCAAAGATTTCTATACGCATGCAAGAGCAATGCCTTATTGTCGGTTTCTTCTTTTGAACAAGAAACGAAACTTTTTGTTGATGTAATGAAAAGAGACTATTGCTCGAAGGATACAAACTCCATAAAGGAGTGAAATGCACCAAGAAGAAGCCTACAAAACTGCAGAATTAATGCGATCAAACCAAGGAAGAGGAGACTTGTGTTCAGGTCTCCATCCAAGCTTCTCTTGATGATATGGTTACAATCCCATATATTAAAGGCAACCGATGATAATTGTATTTTCCATTAAAAAATGGCCTTCATACGTATTGGGCCAATGATTAAAAAATTGTACAGATCAACGCAGCTTGAAGTTCTTCTACAAACAACCGTGTGAAGGCGAATTTCCGAAGAGGATCGGGAAGCCTGAGCTGAGAAGTGAGGTACATGACAGGAATTGGTAGTTTGTTCTAGGGAAGGCAGAGGAAGGAAAGATAGTTTTCCTATTAGAGAATGGATAGCATCTGAAATGGCTGGCCACTTTGTACTCTTGCCTTATTTTCTTTTGGAAATGATAAAAGTCTCTTGCCAGGGTATTCATTTCATTAGATCTTTTTCAGATGAAGGTGGATGAATGGTTAGTGATGAAAAAAAGAACAGACAGACTTTAGCTCTGAGTAGGCAGCCTGATAGCAGATGGTCTACCAGAAGGGCCGAGCATCGTTTCTGGACAACCGATCAGACCTTTAGCCAAGAGGAGGTGTCTTGTAAGGTTATGAAATTTAGAATATTCTCAAATTCGTGAGATTTTTCTTCTGGCTTCTTGATCTTGGGAAGGTTAATTCTTTTTAATCTTATACAGAAACTCAATAGCCCTCGATACCGATCGTGACAACATAAGGAACTCCTATCAATGCAGTCTGTTTTGGCAAATTTATGTGTCTGGTTAGTCTTTAATTTGCTCGGTGTTAGCTGGTGTTTTCGTTTTCGTCTAAGCAGCTGTACGGGTTTCATAGTAAAGAGAAGATGAAGATTTCATGGTGGAATTTTGTATGAGAGGGTGGTAGGGACTTTCTTGGGTATGAAAGAGAATGTACTTTTAGATTTATATTTTTTCAAGTACTGTAATTCATGACAAGAAGAGAGATCTTTGATCATCTTCATTGGGTTGGAGTGGCTGCTTGTTTTCTGGATCTATTTGGATGTATTTTTTCACCAATCGAGATGAACATTTATACTTTATTGATTGTTCTTTACTCACTCCCTAACAGCTCTAAACAAAAGAATTAAGATCTGGGTTGCTGGTTTTTTGGTTGCATCTGATTGAATGATATGAATATTTGGCAGTTTTTTCCCAAGCAAGGTAAATCCCCTAGGAAACATGAGGTCATCTTCATAACTCCTACAGGGGAGGAGATCAACCACAAAAGGAAGTTGGATCAGTACCTGAAGGCACACCCCGGTAGCCCGGCAGCTGCTGAATTTGATTGGAGCACGGGTGAGACGCCAAGGAGGTCAGCAAGGATAAGCGAAAAGAGTAAAGTGACTCCACCGGTCGAACGTGAGCATCCCAAGAGAAGAAGATCTTCTGTGTCGAAGAAAGATATTAAAGAAACAGAAGCTGAACCAGAAGTTTTGGAGGAGAAGAAAGAAATTGACAACCAAGACGGTGAAAAACATGAGAGCATGGTTGATGCTGCGGTAAAAGATGAAAAGGTAACAAAAGGAGAGGAATTGGACACTAACAGAATTCGAGTAATGAGAAAAGTTTAAGCCTGAAGAGCTGTCTGCATAATTATCCTTCCAAATCGAGGAATCTGGTAGGTTGCAAAATGTCATAGAGGAAAGCCCCATGGAGGAAAACAGCAACAAAAGTATTCAAAGAAGCAAGCTCCTGACATGGTCAACCTTCCGCTGCGGCTCGACCAGCCTAGCCCCCTTGTTTTTTGTTGTAGACTTCTTTTTCTCGTGTTTTCGCCGTTATTACTTGTACTGAAATTTATCGAGGGAAAACAGTGAAAAGCAAGAGAGGTAGAAGTATTTTCAGAAAAATCTCTATTCAATTTTGCAGGATATGGTCGGGAACGGCTAGGGACAAGGGAGGGCTGCGGAAGCGTGGCCAGAAGGACGGGGAAGTAGTAGAAAAACTTAACACCGAGAAAAGAAAACCGCCTCCCCGGGGGGCGGGCGCATCCGCATCGGTAATTTGAACAAAATATATAAGATATGACGTCGCCTATAGTAGTGAATGGGCTACGACCCAGCGGGCTAATATAAGGTGGTGTAGTGTTAATATGACCTTGAAAGCGTATATTTTGGGGACGTTTCCTGGGGGCTGTAGCCCCGTCCTTTCCGAGTGGGTGTATATATCATAGAAAGCAAGAGATTTACAGAATTCTAGAGGGGTGTCTGGATCTGTGATATGACACTGATAAGTGGTATAAAATACTAGTAGTAATTCTTTATTATTTGACGCATAACATTCCATTAGATTAGGTGTATTAATTTGTTTCCATGGCTTGTTTGTTCATGCCAGATTGTACACTAGGAGAGAGAGAGGTGGGTAGTGTTTAATATGATCTCACTGAAATAAAAGCAATCATATATAATTATAGCTTTAGAGTAGACGCTGAATGACTTTGTAAATGTTAAAAACGCTTTGAGTAAGGATAGAGATTATTATAATGCGATAGGCGGCGGTAGTAAACTCATTCTTGATTAGAATCCAACTGTTTGATCGCCTTTGAAGCCATCTTAACCACTTGGCTATCGTGTTCGTCTCCTGGCTCCCTCCAAAAAAAAACAGAAGGAATCGAAATAATAGCATGACATAATCGTACTTATTATTGTATGTAAATTAAAAAATACAGTAAGGACACTTGTTGTATAAACTGTATAATAAACTTATAGCACTATATATATTATTTACAGTATAACATAAGTTTAAGATTAAATTGGGCTAACACTATCGAGGGAAGATAGGAGGAGTGGTATAATAACGGGGAGAACCACTGAAAAATATTATCTACTAGAGCAATAATAATTAATAAAAGAAGTCGCTACACTGTAATAGACCATGATCCATAAACATGCCAATAGAAACGGAAAAAAATAACATCTCATTTAGAATATTTGTCAATAAAAGTATACATTGAGGCTTATAAAACACAAGCAATTATAGGGAGCTTGGACAATAGTTATTGAAAAACACATTTAAAACACGAACATCACACACAGACACAAATGTACTTAAAATAAAATTAAATAAATGTGTTTAAAGTTAGAAAACTATCTATTTCTTATGCCTCTAAAGTCCTCTAAGAAAATAATTAATTTTACGAATACTCTATTGTGCATTGTTGTCTAATTTGGCTCTCTTCTTTTGATGTTGGCAGTATGCCGTTCTATCTTAA

mRNA sequence

ATGGAAGATCAACGCAGCTTGAAGTTCTTCTACAAACAACCGTGTGAAGGCGAATTTCCGAAGAGGATCGGGAAGCCTGAGCTGAGAAGTGAGTTTTTTCCCAAGCAAGGTAAATCCCCTAGGAAACATGAGGTCATCTTCATAACTCCTACAGGGGAGGAGATCAACCACAAAAGGAAGTTGGATCAGTACCTGAAGGCACACCCCGGTAGCCCGGCAGCTGCTGAATTTGATTGGAGCACGGGTGAGACGCCAAGGAGGTCAGCAAGGATAAGCGAAAAGAGTAAAGTGACTCCACCGGTCGAACGTGAGCATCCCAAGAGAAGAAGATCTTCTGTGTCGAAGAAAGATATTAAAGAAACAGAAGCTGAACCAGAAGTTTTGGAGGAGAAGAAAGAAATTGACAACCAAGACGGTGAAAAACATGAGAGCATGGTTGATGCTGCGGTAAAAGATGAAAAGGTTGCAAAATGTCATAGAGGAAAGCCCCATGGAGGAAAACAGCAACAAAAGATATGGTCGGGAACGGCTAGGGACAAGGGAGGGCTGCGGAAGCGTGGCCAGAAGGACGGGGAAGTAGTAGAAAAACTTAACACCGAGAAAAGAAAACCGCCTCCCCGGGGGGCGGGCGCATCCGCATCGTATGCCGTTCTATCTTAA

Coding sequence (CDS)

ATGGAAGATCAACGCAGCTTGAAGTTCTTCTACAAACAACCGTGTGAAGGCGAATTTCCGAAGAGGATCGGGAAGCCTGAGCTGAGAAGTGAGTTTTTTCCCAAGCAAGGTAAATCCCCTAGGAAACATGAGGTCATCTTCATAACTCCTACAGGGGAGGAGATCAACCACAAAAGGAAGTTGGATCAGTACCTGAAGGCACACCCCGGTAGCCCGGCAGCTGCTGAATTTGATTGGAGCACGGGTGAGACGCCAAGGAGGTCAGCAAGGATAAGCGAAAAGAGTAAAGTGACTCCACCGGTCGAACGTGAGCATCCCAAGAGAAGAAGATCTTCTGTGTCGAAGAAAGATATTAAAGAAACAGAAGCTGAACCAGAAGTTTTGGAGGAGAAGAAAGAAATTGACAACCAAGACGGTGAAAAACATGAGAGCATGGTTGATGCTGCGGTAAAAGATGAAAAGGTTGCAAAATGTCATAGAGGAAAGCCCCATGGAGGAAAACAGCAACAAAAGATATGGTCGGGAACGGCTAGGGACAAGGGAGGGCTGCGGAAGCGTGGCCAGAAGGACGGGGAAGTAGTAGAAAAACTTAACACCGAGAAAAGAAAACCGCCTCCCCGGGGGGCGGGCGCATCCGCATCGTATGCCGTTCTATCTTAA

Protein sequence

MEDQRSLKFFYKQPCEGEFPKRIGKPELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESMVDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDKGGLRKRGQKDGEVVEKLNTEKRKPPPRGAGASASYAVLS

Homology

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BLAST of Carg17495 vs. NCBI nr
Match: KAG7021237.1 (Methyl-CpG-binding domain-containing protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 431.8 bits (1109), Expect = 3.5e-117
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MEDQRSLKFFYKQPCEGEFPKRIGKPELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRK 60
           MEDQRSLKFFYKQPCEGEFPKRIGKPELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRK
Sbjct: 1   MEDQRSLKFFYKQPCEGEFPKRIGKPELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRK 60

Query: 61  LDQYLKAHPGSPAAAEFDWSTGETPRRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKE 120
           LDQYLKAHPGSPAAAEFDWSTGETPRRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKE
Sbjct: 61  LDQYLKAHPGSPAAAEFDWSTGETPRRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKE 120

Query: 121 TEAEPEVLEEKKEIDNQDGEKHESMVDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDK 180
           TEAEPEVLEEKKEIDNQDGEKHESMVDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDK
Sbjct: 121 TEAEPEVLEEKKEIDNQDGEKHESMVDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDK 180

Query: 181 GGLRKRGQKDGEVVEKLNTEKRKPPPRGAGASASYAVLS 220
           GGLRKRGQKDGEVVEKLNTEKRKPPPRGAGASASYAVLS
Sbjct: 181 GGLRKRGQKDGEVVEKLNTEKRKPPPRGAGASASYAVLS 219

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BLAST of Carg17495 vs. NCBI nr
Match: XP_022937827.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 5.2e-60
Identity = 130/155 (83.87%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 26  PELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP 85
           P  + +FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP
Sbjct: 23  PGWKKKFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP 82

Query: 86  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESM 145
           RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEID+QDGEKHE M
Sbjct: 83  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDDQDGEKHERM 142

Query: 146 VDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDK 181
           VDAAVKDEKV K         KQ+ KI S + ++K
Sbjct: 143 VDAAVKDEKVTKDE--AVDAEKQEHKIASESEQEK 175

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BLAST of Carg17495 vs. NCBI nr
Match: KAG6586387.1 (Methyl-CpG-binding domain-containing protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 5.2e-60
Identity = 130/149 (87.25%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI
Sbjct: 4   FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 63

Query: 92  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESMVDAAVK 151
           SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESMVDA VK
Sbjct: 64  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESMVDAVVK 123

Query: 152 DEKVAKCHRGKPHGGKQQQKIWSGTARDK 181
           DEKV K         KQ+ KI S + ++K
Sbjct: 124 DEKVTKDE--AVDAEKQEHKIASESEQEK 150

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BLAST of Carg17495 vs. NCBI nr
Match: XP_023537783.1 (methyl-CpG-binding domain-containing protein 10-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-59
Identity = 129/155 (83.23%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 26  PELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP 85
           P  + +FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPG PAAAEFDWSTGETP
Sbjct: 23  PGWKKKFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGGPAAAEFDWSTGETP 82

Query: 86  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESM 145
           RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEE+KEIDNQDGEKHESM
Sbjct: 83  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEEKEIDNQDGEKHESM 142

Query: 146 VDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDK 181
           VDA VKDEKV K         KQ+ KI S + ++K
Sbjct: 143 VDAEVKDEKVTKDE--AVDAEKQEHKIASESEQEK 175

[Close]

BLAST of Carg17495 vs. NCBI nr
Match: XP_022937828.1 (methyl-CpG-binding domain-containing protein 10-like isoform X2 [Cucurbita moschata] >XP_022937829.1 methyl-CpG-binding domain-containing protein 10-like isoform X2 [Cucurbita moschata] >XP_022937830.1 methyl-CpG-binding domain-containing protein 10-like isoform X2 [Cucurbita moschata] >XP_022937831.1 methyl-CpG-binding domain-containing protein 10-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 239.6 bits (610), Expect = 2.6e-59
Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI
Sbjct: 4   FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 63

Query: 92  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESMVDAAVK 151
           SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEID+QDGEKHE MVDAAVK
Sbjct: 64  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDDQDGEKHERMVDAAVK 123

Query: 152 DEKVAKCHRGKPHGGKQQQKIWSGTARDK 181
           DEKV K         KQ+ KI S + ++K
Sbjct: 124 DEKVTKDE--AVDAEKQEHKIASESEQEK 150

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BLAST of Carg17495 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-23
Identity = 73/185 (39.46%), Postives = 113/185 (61.08%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           F+PK+  +PRK E++F+ PTGEEI+ +++L+QYLKAHPG+P  +EF+W+TGETPRRS+RI
Sbjct: 22  FYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRI 81

Query: 92  SEKSKVTPPVEREHP--KRRRSSVSKKDIKETEAEPEVLEEKKEID-NQDGEKHESMVDA 151
           S+K K T P   + P  K+RRSS++KKD KE   + E    K+ +D ++DG+   +  + 
Sbjct: 82  SQKVKATTPTPDKEPLLKKRRSSLTKKDNKEAAEKNEEAAVKENMDVDKDGKTENAEAEK 141

Query: 152 AVKDE---KVAKCHRGKPHGGK-QQQKIWSGTARDKGGLRKRGQ---------KDGEVVE 201
             + E   ++A+  +    G K + +K+     + + G  K GQ         K+GE  E
Sbjct: 142 EKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKTEAG--KEGQTEIAEAEKEKEGEKAE 201

[Close]

BLAST of Carg17495 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.8e-22
Identity = 65/145 (44.83%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           F+P +  S +K EV+F+ PTGEEI+++++L+QYLK+HPG+PA AEFDW+T  TPRRSARI
Sbjct: 22  FYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARI 81

Query: 92  SEKSKVTPPVEREHPKRR---RSSVSKKD---------------IKETEAE-PEVLEEKK 151
           SEK+K TP  ++E PK+R   +S VSKKD               +K+TE   PE + E +
Sbjct: 82  SEKTKATPSPDKEPPKKRGRTKSPVSKKDAEGEKSEGGGEENSHVKDTEMNPPEGIAENE 141

Query: 152 EIDNQDGEKHESMVDAAVKDEKVAK 158
            + +++G      V+ A K+  VA+
Sbjct: 142 NVTDKNGSGETERVNDA-KENIVAE 165

[Close]

BLAST of Carg17495 vs. ExPASy TrEMBL
Match: A0A6J1FCB1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444100 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.5e-60
Identity = 130/155 (83.87%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 26  PELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP 85
           P  + +FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP
Sbjct: 23  PGWKKKFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP 82

Query: 86  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESM 145
           RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEID+QDGEKHE M
Sbjct: 83  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDDQDGEKHERM 142

Query: 146 VDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDK 181
           VDAAVKDEKV K         KQ+ KI S + ++K
Sbjct: 143 VDAAVKDEKVTKDE--AVDAEKQEHKIASESEQEK 175

[Close]

BLAST of Carg17495 vs. ExPASy TrEMBL
Match: A0A6J1FCB6 (methyl-CpG-binding domain-containing protein 10-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444100 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-59
Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI
Sbjct: 4   FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 63

Query: 92  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESMVDAAVK 151
           SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEID+QDGEKHE MVDAAVK
Sbjct: 64  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDDQDGEKHERMVDAAVK 123

Query: 152 DEKVAKCHRGKPHGGKQQQKIWSGTARDK 181
           DEKV K         KQ+ KI S + ++K
Sbjct: 124 DEKVTKDE--AVDAEKQEHKIASESEQEK 150

[Close]

BLAST of Carg17495 vs. ExPASy TrEMBL
Match: A0A6J1HLG2 (methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465620 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.4e-58
Identity = 133/188 (70.74%), Postives = 147/188 (78.19%), Query Frame = 0


Query: 26  PELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP 85
           P  + +FFPKQGKSPRKHEVIFITPTGEEINHKR+LDQYLKAHPG PAAAEFDWSTGETP
Sbjct: 23  PGWKKKFFPKQGKSPRKHEVIFITPTGEEINHKRRLDQYLKAHPGGPAAAEFDWSTGETP 82

Query: 86  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESM 145
           RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEE+KEIDNQDGEKHESM
Sbjct: 83  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEEKEIDNQDGEKHESM 142

Query: 146 VDAAVKDEKVAKCHRGKPHGG-------KQQQKIWSGTARDK--GGLRKRGQKDGEVVEK 205
           VDA VKDEKV K    +           KQ+ KI S + ++K    L ++  +  ++   
Sbjct: 143 VDAEVKDEKVTKDEAVEAEAAPKTNDAEKQEHKIGSESEQEKLDKDLNEKEPESSKLNLN 202

[Close]

BLAST of Carg17495 vs. ExPASy TrEMBL
Match: A0A6J1HMU6 (methyl-CpG-binding domain-containing protein 10-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465620 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 6.8e-58
Identity = 132/182 (72.53%), Postives = 144/182 (79.12%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           FFPKQGKSPRKHEVIFITPTGEEINHKR+LDQYLKAHPG PAAAEFDWSTGETPRRSARI
Sbjct: 4   FFPKQGKSPRKHEVIFITPTGEEINHKRRLDQYLKAHPGGPAAAEFDWSTGETPRRSARI 63

Query: 92  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESMVDAAVK 151
           SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEE+KEIDNQDGEKHESMVDA VK
Sbjct: 64  SEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEEKEIDNQDGEKHESMVDAEVK 123

Query: 152 DEKVAKCHRGKPHGG-------KQQQKIWSGTARDK--GGLRKRGQKDGEVVEKLNTEKR 205
           DEKV K    +           KQ+ KI S + ++K    L ++  +  ++    N E  
Sbjct: 124 DEKVTKDEAVEAEAAPKTNDAEKQEHKIGSESEQEKLDKDLNEKEPESSKLNLNENLEGA 183

[Close]

BLAST of Carg17495 vs. ExPASy TrEMBL
Match: A0A5D3BH67 (Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00350 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 9.9e-49
Identity = 102/127 (80.31%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 26  PELRSEFFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETP 85
           P  + +FFPKQG SPRKHEVIF TPTGEEIN+KRKLDQYLKAHPG PAAAEFDW TGETP
Sbjct: 23  PGWKKKFFPKQGNSPRKHEVIFTTPTGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETP 82

Query: 86  RRSARISEKSKVTPPVEREHPKRRRSSVSKKDIKETEAEPEVLEEKKEIDNQDGEKHESM 145
           RRSARISEK+K +PP+E EHPKR+R+SVSKKD+KETEAEPEVLEEKKE+DN D  K ESM
Sbjct: 83  RRSARISEKAKASPPMESEHPKRKRTSVSKKDLKETEAEPEVLEEKKEVDNPDAGKDESM 142

Query: 146 VDAAVKD 153
            DA VKD
Sbjct: 143 ADAEVKD 149

[Close]

BLAST of Carg17495 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-25
Identity = 73/185 (39.46%), Postives = 113/185 (61.08%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           F+PK+  +PRK E++F+ PTGEEI+ +++L+QYLKAHPG+P  +EF+W+TGETPRRS+RI
Sbjct: 22  FYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRI 81

Query: 92  SEKSKVTPPVEREHP--KRRRSSVSKKDIKETEAEPEVLEEKKEID-NQDGEKHESMVDA 151
           S+K K T P   + P  K+RRSS++KKD KE   + E    K+ +D ++DG+   +  + 
Sbjct: 82  SQKVKATTPTPDKEPLLKKRRSSLTKKDNKEAAEKNEEAAVKENMDVDKDGKTENAEAEK 141

Query: 152 AVKDE---KVAKCHRGKPHGGK-QQQKIWSGTARDKGGLRKRGQ---------KDGEVVE 201
             + E   ++A+  +    G K + +K+     + + G  K GQ         K+GE  E
Sbjct: 142 EKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKTEAG--KEGQTEIAEAEKEKEGEKAE 201

[Close]

BLAST of Carg17495 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-23
Identity = 65/145 (44.83%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLKAHPGSPAAAEFDWSTGETPRRSARI 91
           F+P +  S +K EV+F+ PTGEEI+++++L+QYLK+HPG+PA AEFDW+T  TPRRSARI
Sbjct: 22  FYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARI 81

Query: 92  SEKSKVTPPVEREHPKRR---RSSVSKKD---------------IKETEAE-PEVLEEKK 151
           SEK+K TP  ++E PK+R   +S VSKKD               +K+TE   PE + E +
Sbjct: 82  SEKTKATPSPDKEPPKKRGRTKSPVSKKDAEGEKSEGGGEENSHVKDTEMNPPEGIAENE 141

Query: 152 EIDNQDGEKHESMVDAAVKDEKVAK 158
            + +++G      V+ A K+  VA+
Sbjct: 142 NVTDKNGSGETERVNDA-KENIVAE 165

[Close]

BLAST of Carg17495 vs. TAIR 10
Match: AT1G15340.2 (methyl-CPG-binding domain 10 )

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-05
Identity = 62/201 (30.85%), Postives = 93/201 (46.27%), Query Frame = 0


Query: 32  FFPKQGKSPRKHEVIFITPTGEEINHKRKLDQYLK-----AHPGSPAAAEFDWST---GE 91
           F+PK+  +PRK E++F+ PTGEEI+ +++L+QYLK     A     AA + +      G+
Sbjct: 22  FYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKDNKEAAEKNEEAAVKENMDVDKDGK 81

Query: 92  TPRRSA-RISEKSKVTPPVE-----REHPKRRRSSVSKKDIKE----------TEAEPEV 151
           T    A +  EK  VT   E      E  K     V+K+  K            EAE E 
Sbjct: 82  TENAEAEKEKEKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKTEAGKEGQTEIAEAEKEK 141

Query: 152 LEEKKEIDNQDGE----KHESM-VDAAVKDEKVAKCHRGKPHGGKQQQKIWSGTARDKGG 203
             EK E +N++ E    K ESM VD +  ++K      G   G ++  K+         G
Sbjct: 142 EGEKAEAENKEAEVVRDKKESMEVDTSELEKKA-----GSGEGAEEPSKV--------EG 201

The following BLAST results are available for this feature:

BLAST of Carg17495 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021237.1	3.5e-117	100.00	Methyl-CpG-binding domain-containing protein 10, partial [Cucurbita argyrosperma...	[more]
XP_022937827.1	5.2e-60	83.87	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita mosch...	[more]
KAG6586387.1	5.2e-60	87.25	Methyl-CpG-binding domain-containing protein 10, partial [Cucurbita argyrosperma...	[more]
XP_023537783.1	1.2e-59	83.23	methyl-CpG-binding domain-containing protein 10-like isoform X1 [Cucurbita pepo ...	[more]
XP_022937828.1	2.6e-59	86.58	methyl-CpG-binding domain-containing protein 10-like isoform X2 [Cucurbita mosch...	[more]

BLAST of Carg17495 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI36	1.4e-23	39.46	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LW00	5.8e-22	44.83	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg17495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCB1	2.5e-60	83.87	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita mos...	[more]
A0A6J1FCB6	1.2e-59	86.58	methyl-CpG-binding domain-containing protein 10-like isoform X2 OS=Cucurbita mos...	[more]
A0A6J1HLG2	1.4e-58	70.74	methyl-CpG-binding domain-containing protein 11-like isoform X1 OS=Cucurbita max...	[more]
A0A6J1HMU6	6.8e-58	72.53	methyl-CpG-binding domain-containing protein 10-like isoform X2 OS=Cucurbita max...	[more]
A0A5D3BH67	9.9e-49	80.31	Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa...	[more]

BLAST of Carg17495 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15340.1	9.9e-25	39.46	methyl-CPG-binding domain 10	[more]
AT3G15790.1	4.1e-23	44.83	methyl-CPG-binding domain 11	[more]
AT1G15340.2	1.7e-05	30.85	methyl-CPG-binding domain 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 28..171 e-value: 7.7E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..159
None	No IPR available	PANTHER	PTHR33729:SF6	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE	coord: 29..170
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 29..84 e-value: 6.5E-7 score: 29.0
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 29..170
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 32..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17495-RA	Carg17495-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding