Carg17355 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg17355
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 9186604 .. 9188483 (-)
RNA-Seq ExpressionCarg17355
SyntenyCarg17355
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGGAACTAAAATTCAAGAATATCTACCATTTTCTATGGCTAGAAAGGGGAATGCGAAATCGAATATCTTTAAAAGCTTTCTTTCGATTTGTAAACGAATCAGGATTTGACTGAGGAAATACTGTTGGCTTTTCTATGATGAATTTATGTGTTGAGTTGCTGACTAAATTTTGAAGTGGATTATATTACAGTTTAAAGTCTTTTTGTTCTAATTCCAGCAGTGATCAGATGGGAACTCGAGCATATTCAAAGTTCATCCATATGAGAATATTATGTACCTAGTTGATGACAGAAAGATTTCCGAGTATGTTGGGCAACAAAAGATAAGTGTTAAAGTCTTTGAAAGCTTTTCTCCCATCTTTGCTGAAAATGAAATCTACTTTTACTTTTTTTGAATACTTTTTAGTTGTGGCGGTGGAAAATGGGGGCTCAAAGAGGGATGAAATTTGATAAAAGTGGGCACATACCAATATGTTCAGTACTCTTTTCAGGTGATTCTCTATTTTGTCCTTTTTTTTAATTTTTTCCAATTTTATTCTCGATATATTATAAGTTTTTAATGAGGTCTCTTCGGAAAAAACTTCGTTCACACAAAGTCAATGTATTGTTAATATATTTGAAATATATGAATATGTTATGACACTCAACTTGTGTGTAATATAACTTTCTTATCAAATTTCAAAAGAATATGAAAGCAATTACTGAATCAAAGTAAAATTGAGAAGTTCAAAGATTCAACTTCTATTTTGGTTCTTTTATTTTGAAACTTATTTTATATTTGTTTTACTTTTGTTCATGCACTTTCAATAAATTATCAAATCATTGCTTGTTCGGATAAAATTTAGTCTAAAAATATATTCTCATAATGTAATTTTAATTTAGACTAAAAGGGGACAACTCCAACAAAACTTTTAACATAGGTGTCTATCAAATGTTCACATCTTGATTTTACGAGGCATTGATGAAAACATCGGTGAAGGTAAAGGTGAAACAATCGATATATTATATTTTTCAAAGTATTGGTAAAAGAGTTAAAAGTACTTTCTTCCATTTTAGTCTTTTATGTTTCTATTGATTTTAAAATTTTTGTGCCTTGCTTTATGGTTAATCTCTTTCTACAAAAGTATCTGTTTTTACAATTTTTCTTTAAAATTTTAGAAATCCATTCACATTGAAATTTGTTTCTATTATTTTGTAAAATTAAATAAATATTAACTTCAATCTAAGAAAATGCAGGTGTGCGTGGACATGAGCATGCAGGAGCACTGGTACAGTTTCAAGAAAATCACAACTTGACCCGATTGAACAGAGCCTATGTAAGATTCTCTCTTCTTTTCATTTCTCGCTAAAAGGAACTGAACATATTCGATGCTCATCAGAAAAGTAGATGCTTCTGTCGTATTGCTGATGACTTTTACCCTTATAATGCGCGTTTGGGGTTGGCTGATACCTCGTCATTGGGGTTGGTTGGGTGTTTTTTCTATATGGGCGGAGTGTGGGGCCCTTTCATTTCGGAAATACGATGAACTCGTATATGATGCAAGCAATGAAGCGCAAGAGAATGTGAAAAGGAGGGGAGAAGTGGTGTGTGGTGCGCGGGTGAGGAGGGTGTGTGGGTCGACTATGAGAAAATATCTGACGGATAGGCTGGGCGTAATATGAGGGTGAGTGTCATGGGGATAACTGGTGGGTTACTTCCTAGGTTTGTAGTAATAGTTTTCCCAAGGCTTGTACGCTGTAAGCTGTTGAGGGTTGGTCAATTTGACTCTTCATACGTTTCTATGGTTTTGAACTTTGAAGGTTCTTGGAAAGATTTTGCCAGTTTATATCATTTCATTTGCGTTAAGTAAGAGAATTCCTATTCTAGAGAACTAA

mRNA sequence

ATGTTGTGGCGGTGGAAAATGGGGGCTCAAAGAGGGATGAAATTTGATAAAAGTGGGCACATACCAATATGTTCAGTACTCTTTTCAGGTGTGCGTGGACATGAGCATGCAGGAGCACTGGTACAGTTTCAAGAAAATCACAACTTGACCCGATTGAACAGAGCCTATGTTCTTGGAAAGATTTTGCCAGTTTATATCATTTCATTTGCGTTAAGTAAGAGAATTCCTATTCTAGAGAACTAA

Coding sequence (CDS)

ATGTTGTGGCGGTGGAAAATGGGGGCTCAAAGAGGGATGAAATTTGATAAAAGTGGGCACATACCAATATGTTCAGTACTCTTTTCAGGTGTGCGTGGACATGAGCATGCAGGAGCACTGGTACAGTTTCAAGAAAATCACAACTTGACCCGATTGAACAGAGCCTATGTTCTTGGAAAGATTTTGCCAGTTTATATCATTTCATTTGCGTTAAGTAAGAGAATTCCTATTCTAGAGAACTAA

Protein sequence

MLWRWKMGAQRGMKFDKSGHIPICSVLFSGVRGHEHAGALVQFQENHNLTRLNRAYVLGKILPVYIISFALSKRIPILEN
Homology
[Close]
BLAST of Carg17355 vs. NCBI nr
Match: KAG7028967.1 (hypothetical protein SDJN02_10150, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MLWRWKMGAQRGMKFDKSGHIPICSVLFSGVRGHEHAGALVQFQENHNLTRLNRAYVLGK 60
          MLWRWKMGAQRGMKFDKSGHIPICSVLFSGVRGHEHAGALVQFQENHNLTRLNRAYVLGK
Sbjct: 1  MLWRWKMGAQRGMKFDKSGHIPICSVLFSGVRGHEHAGALVQFQENHNLTRLNRAYVLGK 60

Query: 61 ILPVYIISFALSKRIPILEN 81
          ILPVYIISFALSKRIPILEN
Sbjct: 61 ILPVYIISFALSKRIPILEN 80

[Close]
BLAST of Carg17355 vs. NCBI nr
Match: KAG6597510.1 (hypothetical protein SDJN03_10690, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 8.3e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 2  LWRWKMGAQRGMKFDKSGHIPICSVLFSGVRGHEHAGALVQFQENHNLTRLNRAY 57
          LWRWKMGAQRGM+FDKSGHIPICSVLFSG RGHEHAGALVQFQENHNLTRLNRAY
Sbjct: 10 LWRWKMGAQRGMEFDKSGHIPICSVLFSGARGHEHAGALVQFQENHNLTRLNRAY 64

The following BLAST results are available for this feature:
BLAST of Carg17355 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028967.11.6e-38100.00hypothetical protein SDJN02_10150, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597510.18.3e-2496.36hypothetical protein SDJN03_10690, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg17355 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17355 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg17355 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17355-RACarg17355-RAmRNA