Carg16885 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16885
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleolar protein 10
Location	Carg_Chr19: 665900 .. 670011 (-)
RNA-Seq Expression	Carg16885
Synteny	Carg16885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTATTCAAATCTTCTGTGTTTAGGGCTTTTGCATTAAGTTTGTGGAATGAATTGATTTTTCTCCGAATTTTTTTTCAGGTTGAGTGTTTAGCAACTATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACGAAGGTTTGTCTTTCTTCGTTTTCTTTTTTTGCTCTTTGTTTAAAAGTTCATCGATATCACATCAATTGATTAGCGGCGTTGAGTCCTTTGAAAAAAAAAAAAAAAATCTTAAATGCATGAACTGTGTCTGCCGCGTCTCAGATAAGCTGTGTTATATGTACTCTCTGATTTTGAAGATAATGAAGGTTTATTTAGTCACTGACTATAAGTTTTGGAGATAGGATTAATTCTATTTGTGCAGGTCATCCTTAAAAGATTAGAGCTAGATCTCACTTGATATTGAAGTAGGCTACCATCATTAAGTGCGAGTCATTTGTGCAGTTGCATTTTCGTTGTTGTACCCATTAAATGATTGCCTAAATTTATAGTGCACCCTTACTTAGAATATCCAATTCTCCAAAAAGTTCACGGTAAGGCTTTGAGCTTTGTCTTATGAATTTCAAATCCTCCTTTCTTTTCTTCACCATTTCATGATGGCAGATTAGAGTTACCTTAGTCCCTTCCTTTGACCATGGAGGAGGAGAGGCTTTAGAGTTTAGAGTTTAGACGCCATTCTTTCTCTACTGTCCGGGCTGGTAGAGATTTTAGCTATATTCTCATTGGGACTTTGTTTCTGCTTATATCGAAGCTGGTAGACATGGATAGATCTGTTTTGAGGCTGAGAAGTTCTTCAATGGCTTGCCAAATGGATTATCAGGCTCTCCTTAAAGAGAGTTTGTTTTTTTTTTTTATAAGAGACAATTTCATTGATGAGTGAAATTTACAAGAGGGATCCATGATGTTTACGAAAGACCTTCCCAATTTGCAATGAGGGAGGTATAACTATAGGAAGTAAAAATATTAGACAGTTTACACCAAGATATAGCTTGGTAAACAACTTGTCGCCCAAATGTTTGTGTGTAGGTCTGTGTCGTATTCTGCAAATATTCTCTGGATTTCTTTCTTTCATAAGATATCCAATGAAAAGCCATGATGAGGTGTTTCCATCTAATAGGGCTTTTTGCGTTCTTGAAAGGTGGTACGGTTTAAGGCCATATCCAAAAAATCCTTTACCTCCTTTGAAATGTGAGATGCCATCCGAATCATATTAAGAATCGTTGTCCAGAAATTTGAGTGTATGTGCCAATTGCCATAAACAAGTGACTTTGTGATTGTTTGCCTTTTTGTCATAGTGACAACCAATTTGGAGAGAGAGTGATGTAAGACATTCTTTTTTGAAGATTTTCACTTGTGTTGATGACTTTATGCACTATTTCCCAAAGGAAGAACTTCACCTTTTTAGGCTGATGTCCTTTCCATATTGTCTTTGCTAGCGTGAGATTTATTGCTTCTACTTTTTCCCCCATGTCCATCATCAAGGATTTTGTAGAAAAGACCCCGTCATGTAGAAAAGACCCCGTCAGCGCTGTTAAGGATTTATTGCTTCTACTTTTTCCCCCCTTGAAGAGAGTTTGTTAAGACAGTCCAAATATGTCAAGCAAATATGGTGTCTGGATAGGGTAAGCGCCCACCTGGCAAGAAAAAGGGATGGATGAAATAAGGTCCTAGAGCTTCATTGCTACTATTATGTAATCCTTCCCACTTGCTAATTCAAACCATATAATATATATTTTTTTTTTTTCAATTGGAATTGAGAAACCTTTTGTAAGGTTACAAGGAATACTTTTCAATGATATGGGACCAACAAAGTCACGGGTAGTTAAGTAGCCTGTGTCTTTGACAAACTAGCTACTCGTCTCAGGCAGACACTCTTTATGCAAGCTAGTTATCAGTCTGGGCCAGAGGAGACTATAGCCTCTTGTGTGAGTATTGGACTCTTGAGGTTCTTGTTAAGCTGTTACTCATTTAGGGCTTTGTGACCTTGACCACATCGCAATGGATCTGTTTGGTGTGGGTGAAGATTAGGAGGTCGGCTGGGTGGGCGAATGCATACTCAGCGCCTGACATTTTGCGGGGAAGCGCTTTAGGAGATATAAGGACTACGATCTCTTAGAACTATTTTTTTTTTCTTTCATCCTACAAAAGGGGGAGAAAAAGAAAAAATCCTTGGAAAAGCCGAGAGACTTTAGAGGCCTCTCTTCCCATATATCTGACTGACAGAGGGAAGAGAGCAACCATCTAATCTATTCCTTGCCTTGCTTAGCTTACAGTCTGGTATGGGCTACCCACTCAAGATCAATGTGCAAGGTGTAGATAACTGGGATCAGTTTTCTTGGCATCCAAGTTAGTGATTGTTTCTCCTGGAAGGTGTTATTTGGTTAGCTTATTTAATCTGGAGATCAATGCCTTTCTCATTTATCAATTTTTTCAAGATCTTGTGGAGTCTCAAAATCCCAAAAGAACTCAGAACTTTTGGCTGGGCCTTCGCTTTTTGAGGATTGAGCTCTGCTAGTACTTTCCAAAGAGAGAAGTAAGATAGCAGGCATTGTTTCCTGTATAGTGTGAAGCTGTTGATGATCGTTTGAACATCTTTAGCCTCAAGTGATGCTCTCCCAAATTGTTTCCTGAAACTTTAGATAAAATTTTATGAATGTCTCATTTCTCCGAAAGTTCTTTTCATCGATATAAATGATGGAAATATTGTGGAAGCTGGGGTTGGAGATGGAATTGGAGGCCCTTTAAAATTCATATGTCATTAGAGTCTTTTGAAATATTGCAGGGGCCTGTGTAATTTACCCTGATTCTAATTATATCAACTTATTTTCCTGAATACACCATAATTGCCAAAGTGGTCCTGTTATGAAGCAACAAGAAAATATGTCTGATGCAATTCCACTTTGATTAGACAATTATCTAGAATGGTAAAACTCTAATATTGTAACCAAAAGATATGTAAGTCATAGTGCTGTAAGATATACAACAGGACTTTCATCGGAAAAATCTCCAAAGTTACTTTTACACACTCCACTGACGTGTGATTTCCCACGTCCAATTTCTTTCGATGGTATGGAGCCAGACCTGTTCTTGTGTTACTCTCTTTTCTCTCCCTCCTAGGGCATTTTAGTCTTCCTCCATGACATCAATTGACAACTAGAACACAGTACCATTGTGCTCTGCCAGTTTTGAGGCAGAGACAACATACTTATTGTTCAGGTTGCAATGATTCTGGATTTTATCAGCACCAAGTTGTATGTAACGGATTTGTACTAAGTTTTTAGAGTCGGTAGACTTCTTTTATTTTCCTTTTTGGTAGAATTGTACATTTTAAAATGCAAACCATTGTGCCAACAAAATACAAATGAATCAATCCCTGCACACACATTTCAACTGGCTTGATAAAACATTGCTAATTCCCCCGCACTGTTTGTACTTTTTCTTATGCTGATATCTAATTTATGCTAACGTATCTAGTTTGCATTTTCCTTTTTCTTGTACAGAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGGTAAAATTCTTTGCATTATCTTGCTAGTTTTCGGCCATCTCGTTTCCCTTATTTGCAGATATAGAAATATCAATAATCTTGGTTGGGAGAAAGGACATGCTGTAAAATCTGTGCTGTTATTCTTGTAATATGGGGATTGGTTGAAACAATATATGTGGTCGATTTCAGTTGTTATTTTCACTGTGGCTGAGCGTATTGTGAAGATTGCAATTATACACTCTTGAGAGTGGATTTAGGCTGTCGATATATATGCAGGCAACATTTATCATTGGTTGACATGTAGAAGAGGATAATGTCGTTGTTCACCTTTCTCCTTAGAGATGTCATCATTTGTTCTCTATATTGATTGAATTAATTCAGATAGTGCCCTCTATACCACCCCTTCGATGCGGTCATGGTTTTAGCAGTTTCGAACTCCTGATAAACTGTTGTACATTTTCTGTCTGCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCG

mRNA sequence

ATGGATGTTGAGTGTTTAGCAACTATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACGAAGAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCG

Coding sequence (CDS)

ATGGATGTTGAGTGTTTAGCAACTATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACGAAGAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCG

Protein sequence

MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP

Homology

[Close]

BLAST of Carg16885 vs. NCBI nr
Match: KAG7011275.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRF 60
          MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRF
Sbjct: 1  MDVECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRF 60

Query: 61 GLLPTQQPPP 71
          GLLPTQQPPP
Sbjct: 61 GLLPTQQPPP 70

[Close]

BLAST of Carg16885 vs. NCBI nr
Match: KAG6606368.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 4  ECLATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLL 63
          ECLATMYL +YINDNGDKVYTTKKESPLGLV QSAHPARFSPDDKYSRQRVLLKKRFGLL
Sbjct: 21 ECLATMYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLL 80

Query: 64 PTQQPPP 71
          PTQ PPP
Sbjct: 81 PTQHPPP 87

[Close]

BLAST of Carg16885 vs. NCBI nr
Match: XP_022963952.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022963953.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022967558.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_022967559.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_023553702.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo] >XP_023553703.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 69 PP 71
          PP
Sbjct: 61 PP 62

[Close]

BLAST of Carg16885 vs. NCBI nr
Match: RWR83981.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 7   ATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 66
           A MYL YYIN+NGDKVYTTKKESPLG+  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
Sbjct: 60  AAMYLQYYINENGDKVYTTKKESPLGVATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 119

Query: 67  QPPP 71
           QPPP
Sbjct: 120 QPPP 123

[Close]

BLAST of Carg16885 vs. NCBI nr
Match: KAG4913253.1 (hypothetical protein JHK86_053686 [Glycine max] >KAG4928150.1 hypothetical protein JHK85_054636 [Glycine max] >KAG5086439.1 hypothetical protein JHK82_053836 [Glycine max] >KRG95691.1 hypothetical protein GLYMA_19G165900v4 [Glycine max] >RZB48261.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Glycine soja])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 8   TMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ 67
           TMYL +YINDNGDKVYTTKK+SPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ
Sbjct: 56  TMYLQFYINDNGDKVYTTKKDSPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ 115

Query: 68  PPP 71
           PPP
Sbjct: 116 PPP 118

[Close]

BLAST of Carg16885 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 3.8e-23
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYL  YIN+ G+KVYTTKKESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 69 P 70
          P
Sbjct: 61 P 61

[Close]

BLAST of Carg16885 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-18
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          M+L +Y+N+NG++VYT KK  P G    SAHPARFSPDDK+SR RV +KKRFGLL TQQP
Sbjct: 1  MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

Query: 69 PP 71
           P
Sbjct: 61 RP 62

[Close]

BLAST of Carg16885 vs. ExPASy Swiss-Prot
Match: Q9V5P6 (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-18
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYLMY IN+NGD+VYT KK +  G    SAHPARFSP+DKYSRQR+ +KKRFGLL TQ+P
Sbjct: 1  MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

Query: 69 PP 71
           P
Sbjct: 61 EP 62

[Close]

BLAST of Carg16885 vs. ExPASy Swiss-Prot
Match: Q9NPE3 (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          M+L YY+N+ GD+VYT KK  P+G    SAHPARFSPDDKYSR R+ +KKRF +L TQQP
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 69 PP 71
           P
Sbjct: 61 RP 62

[Close]

BLAST of Carg16885 vs. ExPASy Swiss-Prot
Match: Q9CQS2 (H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          M+L YY+N+ GD+VYT KK  P+G    SAHPARFSPDDKYSR R+ +KKRF +L TQQP
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 69 PP 71
           P
Sbjct: 61 RP 62

[Close]

BLAST of Carg16885 vs. ExPASy TrEMBL
Match: A0A6J1HVE0 (Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111467025 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 69 PP 71
          PP
Sbjct: 61 PP 62

[Close]

BLAST of Carg16885 vs. ExPASy TrEMBL
Match: A0A6J1HGJ4 (Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111464097 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 69 PP 71
          PP
Sbjct: 61 PP 62

[Close]

BLAST of Carg16885 vs. ExPASy TrEMBL
Match: A0A443NZR2 (Nucleolar protein 10 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01276300 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.4e-26
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 7   ATMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 66
           A MYL YYIN+NGDKVYTTKKESPLG+  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ
Sbjct: 60  AAMYLQYYINENGDKVYTTKKESPLGVATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 119

Query: 67  QPPP 71
           QPPP
Sbjct: 120 QPPP 123

[Close]

BLAST of Carg16885 vs. ExPASy TrEMBL
Match: A0A1S3BHD2 (Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYL +YINDNGDKVYTTKKESPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 69 PP 71
          PP
Sbjct: 61 PP 62

[Close]

BLAST of Carg16885 vs. ExPASy TrEMBL
Match: K7MYQ3 (Nucleolar protein 10 OS=Glycine max OX=3847 GN=GLYMA_19G165900 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 8   TMYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ 67
           TMYL +YINDNGDKVYTTKK+SPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ
Sbjct: 56  TMYLQFYINDNGDKVYTTKKDSPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQ 115

Query: 68  PPP 71
           PPP
Sbjct: 116 PPP 118

[Close]

BLAST of Carg16885 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-24
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYL  YIN+ G+KVYTTKKESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 69 P 70
          P
Sbjct: 61 P 61

[Close]

BLAST of Carg16885 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-22
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 9  MYLMYYINDNGDKVYTTKKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 68
          MYL  YIN+ G+KVYTT KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTT-KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 69 P 70
          P
Sbjct: 61 P 60

The following BLAST results are available for this feature:

BLAST of Carg16885 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011275.1	2.5e-32	100.00	H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr...	[more]
KAG6606368.1	1.7e-28	94.03	H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr...	[more]
XP_022963952.1	2.4e-27	100.00	H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_...	[more]
RWR83981.1	1.3e-25	90.63	H/ACA ribonucleoprotein complex subunit 3-like protein [Cinnamomum micranthum f....	[more]
KAG4913253.1	2.3e-25	92.06	hypothetical protein JHK86_053686 [Glycine max] >KAG4928150.1 hypothetical prote...	[more]

BLAST of Carg16885 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93XX8	3.8e-23	81.97	H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O...	[more]
Q6DRH5	4.8e-18	66.13	H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S...	[more]
Q9V5P6	4.8e-18	69.35	H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=...	[more]
Q9NPE3	1.8e-17	64.52	H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 ...	[more]
Q9CQS2	1.8e-17	64.52	H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3...	[more]

BLAST of Carg16885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVE0	1.2e-27	100.00	Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111467025 PE=3 SV=1	[more]
A0A6J1HGJ4	1.2e-27	100.00	Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111464097 PE=3 SV=1	[more]
A0A443NZR2	6.4e-26	90.63	Nucleolar protein 10 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_012...	[more]
A0A1S3BHD2	1.1e-25	93.55	Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1	[more]
K7MYQ3	1.1e-25	92.06	Nucleolar protein 10 OS=Glycine max OX=3847 GN=GLYMA_19G165900 PE=3 SV=1	[more]

BLAST of Carg16885 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20490.1	2.7e-24	81.97	nucleolar RNA-binding Nop10p family protein	[more]
AT2G20490.2	2.5e-22	80.33	nucleolar RNA-binding Nop10p family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PFAM	PF04135	Nop10p	coord: 11..60 e-value: 9.4E-19 score: 67.2
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PANTHER	PTHR13305	RIBOSOME BIOGENESIS PROTEIN NOP10	coord: 9..69
None	No IPR available	GENE3D	2.20.28.40	H/ACA ribonucleoprotein complex, subunit Nop10	coord: 18..62 e-value: 1.8E-13 score: 52.2
None	No IPR available	PANTHER	PTHR13305:SF2	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3-LIKE PROTEIN	coord: 9..69
IPR036756	H/ACA ribonucleoprotein complex, subunit Nop10 superfamily	SUPERFAMILY	144210	Nop10-like SnoRNP	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16885-RA	Carg16885-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010197	polar nucleus fusion
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0090661	box H/ACA telomerase RNP complex
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0070034	telomerase RNA binding
molecular_function	GO:0030515	snoRNA binding