Carg16603 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg16603
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Serine-aspartate repeat-containing protein F isoform X1
Location	Carg_Chr14: 12892598 .. 12893405 (+)
RNA-Seq Expression	Carg16603
Synteny	Carg16603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGATGCCAAAAAAGTTGATACTCAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCACCAGAAGAATCTATGCAAGTTCCTGAGAGTGAAGACAGATTCACGGATTCCAATTAAGAGAAGAACATTTGGGAACTGAAACGGTCATTGAAGACAATATTGCAACTCAATTTAAGATTTCAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGAAAGAATGCAGAAGAAATTGAAGTTTCTCCTGGATTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTTATATTTATCTATTGGAGATTGCAAGCATAAGAATGAGGAGATAGGAAAGACGACGGGAATTTCAACAAACAATGAACATGAAGCGGAAAGACAAGAACCAGATGAACGAGCAAGGAATGAAATTCCGACAATTCAATTGGTGATATCGAGATGCGTAAATCGCGTAGCTTCAATACAGATAAGCAAAGCGAAGGAAAAACAGGAGAAACAGAGAAAAGTCGATTGCTATTCCAAATAAAGAGAGTCGAAGACTCGCCAAACTTGCATGAGATTAGCTTCACAAAGCCAACGGAGAAACGAATAGGGAAGAAGCGATTCAGAGAAACTGAGACCTCTTTTCCAGAGCTCGCGAAAGAAAAAGAAGAATCGAGGATGGAATTAAAAGCCATGGATCAAAATAACTTAGCAGCAATGTCTCTAAGGTAG

mRNA sequence

ATGCCAGATGCCAAAAAAGTTGATACTCAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCACCAGAAGAATCTATGCAAATTCACGGATTCCAATTAAGAGAAGAACATTTGGGAACTGAAACGGTCATTGAAGACAATATTGCAACTCAATTTAAGATTTCAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGAAAGAATGCAGAAGAAATTGAAGTTTCTCCTGGATTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTTATATTTATCTATTGGAGATTGCAAGCATAAGAATGAGGAGATAGGAAAGACGACGGGAATTTCAACAAACAATGAACATGAAGCGGAAAGACAAGAACCAGATGAACGAGCAAGGAATGAAATTCCGACAATTCAATTGATGCGTAAATCGCGTAGCTTCAATACAGATAAGCAAAGCGAAGGAAAAACAGGAGAAACAGAGAAAAGTCGATTGCTATTCCAAATAAAGAGAGTCGAAGACTCGCCAAACTTGCATGAGATTAGCTTCACAAAGCCAACGGAGAAACGAATAGGGAAGAAGCGATTCAGAGAAACTGAGACCTCTTTTCCAGAGCTCGCGAAAGAAAAAGAAGAATCGAGGATGGAATTAAAAGCCATGGATCAAAATAACTTAGCAGCAATGTCTCTAAGGTAG

Coding sequence (CDS)

ATGCCAGATGCCAAAAAAGTTGATACTCAAGATAAAGAACCTGCGACCGAATTGATACGTCATAATTCTTCGTGTTTACCACCAGAAGAATCTATGCAAATTCACGGATTCCAATTAAGAGAAGAACATTTGGGAACTGAAACGGTCATTGAAGACAATATTGCAACTCAATTTAAGATTTCAAATGCGATCCAAGTGGAATTTAACACGATTGGATCACACTCCAGAAAGAATGCAGAAGAAATTGAAGTTTCTCCTGGATTTGTAGCCAAGAACAAGAACCAGAACGAGGCTCCTGGAGAGGATTGCGAGGATCCAGATGGAGAATATTTGGAAATTTCTGAACAAGGTATGGACACTTTATATTTATCTATTGGAGATTGCAAGCATAAGAATGAGGAGATAGGAAAGACGACGGGAATTTCAACAAACAATGAACATGAAGCGGAAAGACAAGAACCAGATGAACGAGCAAGGAATGAAATTCCGACAATTCAATTGATGCGTAAATCGCGTAGCTTCAATACAGATAAGCAAAGCGAAGGAAAAACAGGAGAAACAGAGAAAAGTCGATTGCTATTCCAAATAAAGAGAGTCGAAGACTCGCCAAACTTGCATGAGATTAGCTTCACAAAGCCAACGGAGAAACGAATAGGGAAGAAGCGATTCAGAGAAACTGAGACCTCTTTTCCAGAGCTCGCGAAAGAAAAAGAAGAATCGAGGATGGAATTAAAAGCCATGGATCAAAATAACTTAGCAGCAATGTCTCTAAGGTAG

Protein sequence

MPDAKKVDTQDKEPATELIRHNSSCLPPEESMQIHGFQLREEHLGTETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDERARNEIPTIQLMRKSRSFNTDKQSEGKTGETEKSRLLFQIKRVEDSPNLHEISFTKPTEKRIGKKRFRETETSFPELAKEKEESRMELKAMDQNNLAAMSLR

Homology

[Close]

BLAST of Carg16603 vs. NCBI nr
Match: KAG7018750.1 (hypothetical protein SDJN02_20623, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 501.1 bits (1289), Expect = 5.6e-138
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MPDAKKVDTQDKEPATELIRHNSSCLPPEESMQIHGFQLREEHLGTETVIEDNIATQFKI 60
           MPDAKKVDTQDKEPATELIRHNSSCLPPEESMQIHGFQLREEHLGTETVIEDNIATQFKI
Sbjct: 1   MPDAKKVDTQDKEPATELIRHNSSCLPPEESMQIHGFQLREEHLGTETVIEDNIATQFKI 60

Query: 61  SNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDT 120
           SNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDT
Sbjct: 61  SNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDPDGEYLEISEQGMDT 120

Query: 121 LYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDERARNEIPTIQLMRKSRSFNTDKQS 180
           LYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDERARNEIPTIQLMRKSRSFNTDKQS
Sbjct: 121 LYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDERARNEIPTIQLMRKSRSFNTDKQS 180

Query: 181 EGKTGETEKSRLLFQIKRVEDSPNLHEISFTKPTEKRIGKKRFRETETSFPELAKEKEES 240
           EGKTGETEKSRLLFQIKRVEDSPNLHEISFTKPTEKRIGKKRFRETETSFPELAKEKEES
Sbjct: 181 EGKTGETEKSRLLFQIKRVEDSPNLHEISFTKPTEKRIGKKRFRETETSFPELAKEKEES 240

Query: 241 RMELKAMDQNNLAAMSLR 259
           RMELKAMDQNNLAAMSLR
Sbjct: 241 RMELKAMDQNNLAAMSLR 258

[Close]

BLAST of Carg16603 vs. NCBI nr
Match: KAA0049322.1 (serine-aspartate repeat-containing protein F isoform X1 [Cucumis melo var. makuwa] >TYK17236.1 serine-aspartate repeat-containing protein F isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-59
Identity = 169/370 (45.68%), Postives = 192/370 (51.89%), Query Frame = 0


Query: 2   PDAKKVDTQDKEPATELIRHNSS------CL---PPEESMQIH------GFQLREEHLGT 61
           P AK VDT+DK   T++I HN+S      CL    P  S+Q+        FQLREE LGT
Sbjct: 442 PAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGT 501

Query: 62  ETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDP 121
           ETV EDNI TQ KISN +Q EFNT  SHS KNAEE EVSP FVA+NK  NEAP EDCED 
Sbjct: 502 ETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENK--NEAPVEDCEDS 561

Query: 122 DGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER--------- 181
           DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +STNNEHEA+R+EPDE          
Sbjct: 562 DGEYLEISEQGMDILNLSIGDCKHKNEEMGETTEVSTNNEHEAKRREPDESPFEPILGFQ 621

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 622 PQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPT 681

Query: 242 ---------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGKT 252
                                            + N I  I+ MRKS SFN D Q EGKT
Sbjct: 682 TNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIE-MRKSPSFNIDIQIEGKT 741

[Close]

BLAST of Carg16603 vs. NCBI nr
Match: XP_008438605.1 (PREDICTED: serine-aspartate repeat-containing protein F isoform X2 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-59
Identity = 169/370 (45.68%), Postives = 192/370 (51.89%), Query Frame = 0


Query: 2   PDAKKVDTQDKEPATELIRHNSS------CL---PPEESMQIH------GFQLREEHLGT 61
           P AK VDT+DK   T++I HN+S      CL    P  S+Q+        FQLREE LGT
Sbjct: 375 PAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGT 434

Query: 62  ETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDP 121
           ETV EDNI TQ KISN +Q EFNT  SHS KNAEE EVSP FVA+NK  NEAP EDCED 
Sbjct: 435 ETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENK--NEAPVEDCEDS 494

Query: 122 DGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER--------- 181
           DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +ST+NEHEAER+EPDE          
Sbjct: 495 DGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEAERREPDESPFEPILGFQ 554

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 555 PQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPS 614

Query: 242 ---------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGKT 252
                                            + N I  I+ MRKS SFN D Q EGKT
Sbjct: 615 TNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIE-MRKSPSFNIDIQIEGKT 674

[Close]

BLAST of Carg16603 vs. NCBI nr
Match: XP_008438606.1 (PREDICTED: serine-aspartate repeat-containing protein F isoform X3 [Cucumis melo])

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-59
Identity = 169/370 (45.68%), Postives = 192/370 (51.89%), Query Frame = 0


Query: 2   PDAKKVDTQDKEPATELIRHNSS------CL---PPEESMQIH------GFQLREEHLGT 61
           P AK VDT+DK   T++I HN+S      CL    P  S+Q+        FQLREE LGT
Sbjct: 293 PAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGT 352

Query: 62  ETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDP 121
           ETV EDNI TQ KISN +Q EFNT  SHS KNAEE EVSP FVA+NK  NEAP EDCED 
Sbjct: 353 ETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENK--NEAPVEDCEDS 412

Query: 122 DGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER--------- 181
           DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +ST+NEHEAER+EPDE          
Sbjct: 413 DGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEAERREPDESPFEPILGFQ 472

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 473 PQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPS 532

Query: 242 ---------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGKT 252
                                            + N I  I+ MRKS SFN D Q EGKT
Sbjct: 533 TNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIE-MRKSPSFNIDIQIEGKT 592

[Close]

BLAST of Carg16603 vs. NCBI nr
Match: XP_031738160.1 (uncharacterized protein LOC105434833 isoform X2 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-59
Identity = 166/374 (44.39%), Postives = 190/374 (50.80%), Query Frame = 0


Query: 1   MPDAKKVDTQDKEPATELIRHNSSCLPPEESMQIHG---------------FQLREEHLG 60
           +P AK VDT+DK   T+L  HN+SC   EE + I                 FQLR EHLG
Sbjct: 301 VPAAKNVDTKDKGTVTDLTCHNTSCSLAEECLVIESPNSSVQIPEVENKEEFQLR-EHLG 360

Query: 61  TETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCED 120
           TETV EDNI TQ KISN ++ EFNT  SHS  NAEE EVSP FV +N+  NEAP EDCED
Sbjct: 361 TETVDEDNIPTQSKISNEVEEEFNTTESHSENNAEEAEVSPEFVTENR--NEAPVEDCED 420

Query: 121 PDGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER-------- 180
            DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +STNNEHE ER+EPDE         
Sbjct: 421 SDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTNNEHEVERREPDESLFEPILGF 480

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 481 QPQTQQKETTIAFQTAESTDESISAPRQETDTETEKSKSNPSDSPSYTQTASSTPTETEP 540

Query: 241 ----------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGK 255
                                             + N I  I+ MRKS SFN D Q EGK
Sbjct: 541 STNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGHIE-MRKSPSFNIDIQIEGK 600

[Close]

BLAST of Carg16603 vs. ExPASy TrEMBL
Match: A0A5D3D317 (Serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00870 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 5.1e-60
Identity = 169/370 (45.68%), Postives = 192/370 (51.89%), Query Frame = 0


Query: 2   PDAKKVDTQDKEPATELIRHNSS------CL---PPEESMQIH------GFQLREEHLGT 61
           P AK VDT+DK   T++I HN+S      CL    P  S+Q+        FQLREE LGT
Sbjct: 442 PAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGT 501

Query: 62  ETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDP 121
           ETV EDNI TQ KISN +Q EFNT  SHS KNAEE EVSP FVA+NK  NEAP EDCED 
Sbjct: 502 ETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENK--NEAPVEDCEDS 561

Query: 122 DGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER--------- 181
           DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +STNNEHEA+R+EPDE          
Sbjct: 562 DGEYLEISEQGMDILNLSIGDCKHKNEEMGETTEVSTNNEHEAKRREPDESPFEPILGFQ 621

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 622 PQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPT 681

Query: 242 ---------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGKT 252
                                            + N I  I+ MRKS SFN D Q EGKT
Sbjct: 682 TNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIE-MRKSPSFNIDIQIEGKT 741

[Close]

BLAST of Carg16603 vs. ExPASy TrEMBL
Match: A0A1S4DSH5 (serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483664 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 169/370 (45.68%), Postives = 192/370 (51.89%), Query Frame = 0


Query: 2   PDAKKVDTQDKEPATELIRHNSS------CL---PPEESMQIH------GFQLREEHLGT 61
           P AK VDT+DK   T++I HN+S      CL    P  S+Q+        FQLREE LGT
Sbjct: 400 PAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGT 459

Query: 62  ETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDP 121
           ETV EDNI TQ KISN +Q EFNT  SHS KNAEE EVSP FVA+NK  NEAP EDCED 
Sbjct: 460 ETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENK--NEAPVEDCEDS 519

Query: 122 DGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER--------- 181
           DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +ST+NEHEAER+EPDE          
Sbjct: 520 DGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEAERREPDESPFEPILGFQ 579

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 580 PQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPS 639

Query: 242 ---------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGKT 252
                                            + N I  I+ MRKS SFN D Q EGKT
Sbjct: 640 TNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIE-MRKSPSFNIDIQIEGKT 699

[Close]

BLAST of Carg16603 vs. ExPASy TrEMBL
Match: A0A0A0L8I8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144220 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 166/374 (44.39%), Postives = 190/374 (50.80%), Query Frame = 0


Query: 1   MPDAKKVDTQDKEPATELIRHNSSCLPPEESMQIHG---------------FQLREEHLG 60
           +P AK VDT+DK   T+L  HN+SC   EE + I                 FQLR EHLG
Sbjct: 399 VPAAKNVDTKDKGTVTDLTCHNTSCSLAEECLVIESPNSSVQIPEVENKEEFQLR-EHLG 458

Query: 61  TETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCED 120
           TETV EDNI TQ KISN ++ EFNT  SHS  NAEE EVSP FV +N+  NEAP EDCED
Sbjct: 459 TETVDEDNIPTQSKISNEVEEEFNTTESHSENNAEEAEVSPEFVTENR--NEAPVEDCED 518

Query: 121 PDGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER-------- 180
            DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +STNNEHE ER+EPDE         
Sbjct: 519 SDGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTNNEHEVERREPDESLFEPILGF 578

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 579 QPQTQQKETTIAFQTAESTDESISAPRQETDTETEKSKSNPSDSPSYTQTASSTPTETEP 638

Query: 241 ----------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGK 255
                                             + N I  I+ MRKS SFN D Q EGK
Sbjct: 639 STNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGHIE-MRKSPSFNIDIQIEGK 698

[Close]

BLAST of Carg16603 vs. ExPASy TrEMBL
Match: A0A1S3AXG5 (serine-aspartate repeat-containing protein F isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483664 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 169/370 (45.68%), Postives = 192/370 (51.89%), Query Frame = 0


Query: 2   PDAKKVDTQDKEPATELIRHNSS------CL---PPEESMQIH------GFQLREEHLGT 61
           P AK VDT+DK   T++I HN+S      CL    P  S+Q+        FQLREE LGT
Sbjct: 375 PAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGT 434

Query: 62  ETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDP 121
           ETV EDNI TQ KISN +Q EFNT  SHS KNAEE EVSP FVA+NK  NEAP EDCED 
Sbjct: 435 ETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENK--NEAPVEDCEDS 494

Query: 122 DGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER--------- 181
           DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +ST+NEHEAER+EPDE          
Sbjct: 495 DGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEAERREPDESPFEPILGFQ 554

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 555 PQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPS 614

Query: 242 ---------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGKT 252
                                            + N I  I+ MRKS SFN D Q EGKT
Sbjct: 615 TNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIE-MRKSPSFNIDIQIEGKT 674

[Close]

BLAST of Carg16603 vs. ExPASy TrEMBL
Match: A0A1S3AXG7 (serine-aspartate repeat-containing protein F isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483664 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 8.6e-60
Identity = 169/370 (45.68%), Postives = 192/370 (51.89%), Query Frame = 0


Query: 2   PDAKKVDTQDKEPATELIRHNSS------CL---PPEESMQIH------GFQLREEHLGT 61
           P AK VDT+DK   T++I HN+S      CL    P  S+Q+        FQLREE LGT
Sbjct: 293 PAAKNVDTKDKGTVTDVICHNTSGSLAEECLVIESPNSSVQVPEVEDKVEFQLREERLGT 352

Query: 62  ETVIEDNIATQFKISNAIQVEFNTIGSHSRKNAEEIEVSPGFVAKNKNQNEAPGEDCEDP 121
           ETV EDNI TQ KISN +Q EFNT  SHS KNAEE EVSP FVA+NK  NEAP EDCED 
Sbjct: 353 ETVDEDNIPTQSKISNEVQEEFNTTESHSEKNAEEAEVSPEFVAENK--NEAPVEDCEDS 412

Query: 122 DGEYLEISEQGMDTLYLSIGDCKHKNEEIGKTTGISTNNEHEAERQEPDER--------- 181
           DGEYLEISEQGMD L LSIGDCKHKNEE+G+TT +ST+NEHEAER+EPDE          
Sbjct: 413 DGEYLEISEQGMDILNLSIGDCKHKNEEMGETTELSTSNEHEAERREPDESPFEPILGFQ 472

Query: 182 ------------------------------------------------------------ 241
                                                                       
Sbjct: 473 PQTQQKETTIVFQTAESTDESISAPRQETDTETEKSKSNPSDSLSYTQTASSTPTETKPS 532

Query: 242 ---------------------------------ARNEIPTIQLMRKSRSFNTDKQSEGKT 252
                                            + N I  I+ MRKS SFN D Q EGKT
Sbjct: 533 TNPIDEQSLATLPFSTFGGEDQDSPGRTSNESISENSIGQIE-MRKSPSFNIDIQIEGKT 592

The following BLAST results are available for this feature:

BLAST of Carg16603 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018750.1	5.6e-138	100.00	hypothetical protein SDJN02_20623, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0049322.1	1.0e-59	45.68	serine-aspartate repeat-containing protein F isoform X1 [Cucumis melo var. makuw...	[more]
XP_008438605.1	1.8e-59	45.68	PREDICTED: serine-aspartate repeat-containing protein F isoform X2 [Cucumis melo...	[more]
XP_008438606.1	1.8e-59	45.68	PREDICTED: serine-aspartate repeat-containing protein F isoform X3 [Cucumis melo...	[more]
XP_031738160.1	1.8e-59	44.39	uncharacterized protein LOC105434833 isoform X2 [Cucumis sativus]	[more]

BLAST of Carg16603 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg16603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D317	5.1e-60	45.68	Serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo var. mak...	[more]
A0A1S4DSH5	8.6e-60	45.68	serine-aspartate repeat-containing protein F isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A0A0L8I8	8.6e-60	44.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G144220 PE=4 SV=1	[more]
A0A1S3AXG5	8.6e-60	45.68	serine-aspartate repeat-containing protein F isoform X2 OS=Cucumis melo OX=3656 ...	[more]
A0A1S3AXG7	8.6e-60	45.68	serine-aspartate repeat-containing protein F isoform X3 OS=Cucumis melo OX=3656 ...	[more]

BLAST of Carg16603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..258
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16603-RA	Carg16603-RA	mRNA