Carg13399 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg13399
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase III subunit RPC8
LocationCarg_Chr08: 2564333 .. 2566551 (-)
RNA-Seq ExpressionCarg13399
SyntenyCarg13399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCTAGAATCCTACGGGAGGCAGCAGTGGAGAATTTTCTGCAATGGGTGAAAGCCTTTTTCGATATTCCTTTTTATTTCTCATCAAACGAATGACATCTTGTTCGAGAAATCCTAGATATTCTTAGGATGATATTAAGGAACCTCAGTGCTATTACTCAAACAAGCATGAAACGTACTGTTGCATATTCGTCAGTGGGTCAAATCGGACTTATATGTTATTCGATATCGCCTTGAATCTTGGTATAGTAGATGATTGAAAATCTTCGTGTAATAAAATAGAAAATATCATTTAAAAATAATTAAATTTAATTATATTATTTAAATAATATAAATTAGAAAAGAAGCTTAAAAGAAAAAACCCAGCCCAATCGTAAGCCCAAAAGTTCAGCCCATTTTATAAAATAAAAGAAAAATAAAATTTAAAAAATAAGAGATCCCCAAGGATCCAACTTCTTCCTCCGAGTTTCACTCACTCTTCCCGCCAAAACCTCGCTTTTGTCCGGTGCCGCCACCGCCTCCGCCTCCTCCTCCCTCCCGCTCGGCTTTGCAAATCAGTGCATCGGTAACCTAACATTTCTCCCTCCCTCTCTCATCGTCAAGTGCAGGTTGTTTTTGGAAGTATTGATGTTTACCTCTTTTTGCTAATAAATATTAGCAAAAAACTGTTGATATTGATTTATGTTACATGAACTTTTATGTATTTAGCAATTGCTTGTTGTCTCTCCTGTTTTGCGTTCCACCGCTTGATACGTTTGGATCTTGAGTTTTTGAAGAATCGCAATTGTAACTATTTAGGTTTGGTTCTTGTGGGATAATTTTGTTTATGTTCTACGCATTAGGCGGGGTGGATTGAAGTTTTCTATGTAATTGGTCCTCTTTCATGTTTTTTATTGGTTTGGTTTCTTTAATCTAGAGCCTCAACTATCGATTGGAGAGGGAAATGAGTGCCAGCGAGGACACTGGCCCCTAAGGAGTGGACGGTTAGATCCTACGTCGGTTGGAGAGGGGAACGAAACATTCTTTACAAGGGTGTGGAAGCCTCAACCAAGTAGATGCATTTTAAAAATATCGAGGGAAAGTCTGAAAGAAAAAGTTCAAAGAAGATAATATTTGCTAGCGTAGTTTTGGATCGTTACACTCGAAGAATGTGGTTTGGTTGGAACTAATCGACTTGATGCCATTAAGGGTGAGCTGGAGAAACTATTCCTGGATAAGGTTCGTGTAAAAAGTTGTCTGTAAACCTGTTGGTTAGCCCTATTCAATTTACTACGCTTGTACTGAGATGAACTTTGTCATGAATGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATAGGGGCTTTATCTTTCCCAGTGATGGCGTTGCAATGTACAAGGTACTCGTGCACTGTTGTATTTCTTCTTCAAGATTGAACCATTAAAGTTCCTTTGTTACCTAGTGTCAATGAGACATGTAACAGCTAAGCCCGCCACTAGAAGATATTGTCTACTTTGGCCTGTTATGTATCGTCGTCAGCCTCACGTTTTTAAAATGCGTCTACTAGGGAGAGGTTTCCACACCCGTACAAGGAATGCTTCGTTCCACTCTCCAACCGATGTGGGTTCTCACAGACTATGACAGTCAACCATATGACATATATGAAACGGATGAGGTTTGTGAATTATGTTAATTGTAGGTTTAATTCTAAGTTTAGTCCTTTTAACTTTTATACTTATTTCATTTGGGTGCTTAAACTTTGAAATGTTTTTGCGCCCATGATTGTTACTGTATCTCACTCACTCTCAACTTCTACCACTTCCTCTACTCATTTGCGCCAATCTTTTATTGATATGTGTGTAGTCAGAGGAAGATTGGTTTATAGTTGGGATATCAATTTTGATGAGTATGAGTACTCATCCAACGAATTTTAGAATCTGTTTGAAATGACTTTTCAACGTTTGGGAGACAAGGGTAGCCCTCGACTCTAGAACACCAAATTTCACTTCACTGTCACTCCTAATTTATATCACAATATCATATCCTTTCCATTACGTAGCAACTACTCTATTAATGAGGCTTAGTTTTTTGTGGTGTAGGCAGCAATTGATTGTGATGGAGTGGGGACCTATTTCATGATGGAATGGCTCGGGAGATGCCGATGCTGA

mRNA sequence

ATGGTCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCTAGAATCCTACGGGAGGCAGCAGTGGAGAATTTTCTGCAATGGGATGATATTAAGGAACCTCAGTGCTATTACTCAAACAAGCATGAAACGTACTGTTGCATATTCGTCAGTGGGTCAAATCGGACTTATATGTTATTCGATATCGCCTTGAATCTTGTTTCACTCACTCTTCCCGCCAAAACCTCGCTTTTGTCCGGTGCCGCCACCGCCTCCGCCTCCTCCTCCCTCCCGCTCGGCTTTGCAAATCAGTGCATCGAGCCTCAACTATCGATTGGAGAGGGAAATGAGTGCCAGCGAGGACACTGGCCCCTAAGGAGTGGACGGTTAGATCCTACGTCGGTTGGAGAGGGGAACGAAACATTCTTTACAAGGTTTTGGATCGTTACACTCGAAGAATGTGGTTTGGTTGGAACTAATCGACTTGATGCCATTAAGGGTGAGCTGGAGAAACTATTCCTGGATAAGATGAACTTTGTCATGAATGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATAGGGGCTTTATCTTTCCCAGTGATGGCGTTGCAATGTACAAGGGAGAGGTTTCCACACCCGTACAAGGAATGCTTCGTTCCACTCTCCAACCGATGTGGGTTCTCACAGACTATGACAGTCAACCATATGACATATATGAAACGGATGAGGCAGCAATTGATTGTGATGGAGTGGGGACCTATTTCATGATGGAATGGCTCGGGAGATGCCGATGCTGA

Coding sequence (CDS)

ATGGTCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCTAGAATCCTACGGGAGGCAGCAGTGGAGAATTTTCTGCAATGGGATGATATTAAGGAACCTCAGTGCTATTACTCAAACAAGCATGAAACGTACTGTTGCATATTCGTCAGTGGGTCAAATCGGACTTATATGTTATTCGATATCGCCTTGAATCTTGTTTCACTCACTCTTCCCGCCAAAACCTCGCTTTTGTCCGGTGCCGCCACCGCCTCCGCCTCCTCCTCCCTCCCGCTCGGCTTTGCAAATCAGTGCATCGAGCCTCAACTATCGATTGGAGAGGGAAATGAGTGCCAGCGAGGACACTGGCCCCTAAGGAGTGGACGGTTAGATCCTACGTCGGTTGGAGAGGGGAACGAAACATTCTTTACAAGGTTTTGGATCGTTACACTCGAAGAATGTGGTTTGGTTGGAACTAATCGACTTGATGCCATTAAGGGTGAGCTGGAGAAACTATTCCTGGATAAGATGAACTTTGTCATGAATGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATAGGGGCTTTATCTTTCCCAGTGATGGCGTTGCAATGTACAAGGGAGAGGTTTCCACACCCGTACAAGGAATGCTTCGTTCCACTCTCCAACCGATGTGGGTTCTCACAGACTATGACAGTCAACCATATGACATATATGAAACGGATGAGGCAGCAATTGATTGTGATGGAGTGGGGACCTATTTCATGATGGAATGGCTCGGGAGATGCCGATGCTGA

Protein sequence

MVSSWSERMISHTGTETQPRILREAAVENFLQWDDIKEPQCYYSNKHETYCCIFVSGSNRTYMLFDIALNLVSLTLPAKTSLLSGAATASASSSLPLGFANQCIEPQLSIGEGNECQRGHWPLRSGRLDPTSVGEGNETFFTRFWIVTLEECGLVGTNRLDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYKGEVSTPVQGMLRSTLQPMWVLTDYDSQPYDIYETDEAAIDCDGVGTYFMMEWLGRCRC
Homology
[Close]
BLAST of Carg13399 vs. NCBI nr
Match: KAG7025609.1 (hypothetical protein SDJN02_12106, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 562.0 bits (1447), Expect = 2.8e-156
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0 

Query: 1   MVSSWSERMISHTGTETQPRILREAAVENFLQWDDIKEPQCYYSNKHETYCCIFVSGSNR 60
           MVSSWSERMISHTGTETQPRILREAAVENFLQWDDIKEPQCYYSNKHETYCCIFVSGSNR
Sbjct: 1   MVSSWSERMISHTGTETQPRILREAAVENFLQWDDIKEPQCYYSNKHETYCCIFVSGSNR 60

Query: 61  TYMLFDIALNLVSLTLPAKTSLLSGAATASASSSLPLGFANQCIEPQLSIGEGNECQRGH 120
           TYMLFDIALNLVSLTLPAKTSLLSGAATASASSSLPLGFANQCIEPQLSIGEGNECQRGH
Sbjct: 61  TYMLFDIALNLVSLTLPAKTSLLSGAATASASSSLPLGFANQCIEPQLSIGEGNECQRGH 120

Query: 121 WPLRSGRLDPTSVGEGNETFFTRFWIVTLEECGLVGTNRLDAIKGELEKLFLDKMNFVMN 180
           WPLRSGRLDPTSVGEGNETFFTRFWIVTLEECGLVGTNRLDAIKGELEKLFLDKMNFVMN
Sbjct: 121 WPLRSGRLDPTSVGEGNETFFTRFWIVTLEECGLVGTNRLDAIKGELEKLFLDKMNFVMN 180

Query: 181 VVANLGLCISVYDIRSVDRGFIFPSDGVAMYKGEVSTPVQGMLRSTLQPMWVLTDYDSQP 240
           VVANLGLCISVYDIRSVDRGFIFPSDGVAMYKGEVSTPVQGMLRSTLQPMWVLTDYDSQP
Sbjct: 181 VVANLGLCISVYDIRSVDRGFIFPSDGVAMYKGEVSTPVQGMLRSTLQPMWVLTDYDSQP 240

Query: 241 YDIYETDEAAIDCDGVGTYFMMEWLGRCRC 271
           YDIYETDEAAIDCDGVGTYFMMEWLGRCRC
Sbjct: 241 YDIYETDEAAIDCDGVGTYFMMEWLGRCRC 270

[Close]
BLAST of Carg13399 vs. NCBI nr
Match: XP_022152296.1 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152304.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152310.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152318.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152325.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >XP_022152332.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-15
Identity = 64/133 (48.12%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK------- 219
           LDAIKGELEKLFLDK      VVANLGLCISVYDIRSVD GFIFPSDG A YK       
Sbjct: 23  LDAIKGELEKLFLDK------VVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIV 82

Query: 220 ----------GEVSTPVQGMLRSTL---------------------------QPMWVLTD 249
                     G+V       LR +L                           +  WV  D
Sbjct: 83  FRPYVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPTPSEFKPDSKNGGKRRWV-WD 142

[Close]
BLAST of Carg13399 vs. NCBI nr
Match: XP_023547503.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_023547504.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-15
Identity = 64/133 (48.12%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK------- 219
           LDAIKGELEKLFLDK      VVANLGLCISVYDIRSVD GFIFPSDG A YK       
Sbjct: 23  LDAIKGELEKLFLDK------VVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIV 82

Query: 220 ----------GEVSTPVQGMLRSTL---------------------------QPMWVLTD 249
                     G+V       LR +L                           +  WV  D
Sbjct: 83  FRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWV-WD 142

[Close]
BLAST of Carg13399 vs. NCBI nr
Match: XP_022991804.1 (DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima])

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-15
Identity = 64/133 (48.12%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK------- 219
           LDAIKGELEKLFLDK      VVANLGLCISVYDIRSVD GFIFPSDG A YK       
Sbjct: 23  LDAIKGELEKLFLDK------VVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIV 82

Query: 220 ----------GEVSTPVQGMLRSTL---------------------------QPMWVLTD 249
                     G+V       LR +L                           +  WV  D
Sbjct: 83  FRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNSGKRRWV-WD 142

[Close]
BLAST of Carg13399 vs. NCBI nr
Match: KAG6575744.1 (DNA-directed RNA polymerase III subunit RPC8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-14
Identity = 63/133 (47.37%), Postives = 66/133 (49.62%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK------- 219
           LDAIKGELEKLFLDK      VVA LGLCISVYDIRSVD GFIFPSDG A YK       
Sbjct: 7   LDAIKGELEKLFLDK------VVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIV 66

Query: 220 ----------GEVSTPVQGMLRSTL---------------------------QPMWVLTD 249
                     G+V       LR +L                           +  WV  D
Sbjct: 67  FRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWV-WD 126

[Close]
BLAST of Carg13399 vs. ExPASy TrEMBL
Match: A0A6J1JVU8 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC111488343 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 64/133 (48.12%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK------- 219
           LDAIKGELEKLFLDK      VVANLGLCISVYDIRSVD GFIFPSDG A YK       
Sbjct: 23  LDAIKGELEKLFLDK------VVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIV 82

Query: 220 ----------GEVSTPVQGMLRSTL---------------------------QPMWVLTD 249
                     G+V       LR +L                           +  WV  D
Sbjct: 83  FRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNSGKRRWV-WD 142

[Close]
BLAST of Carg13399 vs. ExPASy TrEMBL
Match: A0A6J1DFX3 (DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020040 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-15
Identity = 64/133 (48.12%), Postives = 67/133 (50.38%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK------- 219
           LDAIKGELEKLFLDK      VVANLGLCISVYDIRSVD GFIFPSDG A YK       
Sbjct: 23  LDAIKGELEKLFLDK------VVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIV 82

Query: 220 ----------GEVSTPVQGMLRSTL---------------------------QPMWVLTD 249
                     G+V       LR +L                           +  WV  D
Sbjct: 83  FRPYVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPTPSEFKPDSKNGGKRRWV-WD 142

[Close]
BLAST of Carg13399 vs. ExPASy TrEMBL
Match: A0A6J1GPX5 (DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LOC111456422 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-15
Identity = 63/133 (47.37%), Postives = 66/133 (49.62%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK------- 219
           LDAIKGELEKLFLDK      VVA LGLCISVYDIRSVD GFIFPSDG A YK       
Sbjct: 23  LDAIKGELEKLFLDK------VVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIV 82

Query: 220 ----------GEVSTPVQGMLRSTL---------------------------QPMWVLTD 249
                     G+V       LR +L                           +  WV  D
Sbjct: 83  FRPYAGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWV-WD 142

[Close]
BLAST of Carg13399 vs. ExPASy TrEMBL
Match: A0A4D6MSE4 (DNA-directed RNA polymerase III subunit RPC8 OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g2476 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.5e-14
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 0 

Query: 161 DAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYKGE------ 220
           +AI  ELEKLFLDK      V+ANLGLCISVYDIRS+D GFIFP DG   Y G+      
Sbjct: 74  EAIHMELEKLFLDK------VIANLGLCISVYDIRSIDGGFIFPGDGAPTYTGQHHPSSV 133

Query: 221 -----VSTPVQGMLRSTLQPMWVLTDYDSQPYDIYETDEAAIDCDGVG 258
                V +  +    S  + +W   D++ Q Y I ETD  ++D DG+G
Sbjct: 134 VFEYRVFSSEESTTNSVRKGVW-FWDFNEQEYPIQETDVGSLDHDGLG 174

[Close]
BLAST of Carg13399 vs. ExPASy TrEMBL
Match: A0A5A7UWI5 (DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00020 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 160 LDAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK 213
           LDAIKGELEKLF+DK      VVANLGLCISVYDIRSVD GFIFPSDG A YK
Sbjct: 23  LDAIKGELEKLFIDK------VVANLGLCISVYDIRSVDGGFIFPSDGAATYK 69

[Close]
BLAST of Carg13399 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 161 DAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK 213
           DAIK  L+ +FLDK      V+A+LGLC+S+YDI+SV+ GF+ P DG A YK
Sbjct: 24  DAIKSVLQNVFLDK------VLADLGLCVSIYDIKSVEGGFVLPGDGAATYK 69

[Close]
BLAST of Carg13399 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 62.4 bits (150), Expect = 6.5e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 161 DAIKGELEKLFLDKMNFVMNVVANLGLCISVYDIRSVDRGFIFPSDGVAMYK 213
           DAIK  L+ +FLDK      V+A+LGLC+S+YDI+SV+ GF+ P DG A YK
Sbjct: 24  DAIKSVLQNVFLDK------VLADLGLCVSIYDIKSVEGGFVLPGDGAATYK 69

The following BLAST results are available for this feature:
BLAST of Carg13399 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025609.12.8e-156100.00hypothetical protein SDJN02_12106, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022152296.13.7e-1548.12DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia] >X... [more]
XP_023547503.13.7e-1548.12DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo] >XP_02... [more]
XP_022991804.13.7e-1548.12DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima] >XP_022991805.1 ... [more]
KAG6575744.11.8e-1447.37DNA-directed RNA polymerase III subunit RPC8, partial [Cucurbita argyrosperma su... [more]
BLAST of Carg13399 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg13399 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JVU81.8e-1548.12DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1DFX31.8e-1548.12DNA-directed RNA polymerase III subunit RPC8 isoform X2 OS=Momordica charantia O... [more]
A0A6J1GPX58.8e-1547.37DNA-directed RNA polymerase III subunit RPC8 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A4D6MSE47.5e-1446.30DNA-directed RNA polymerase III subunit RPC8 OS=Vigna unguiculata OX=3917 GN=DEO... [more]
A0A5A7UWI51.8e-1281.13DNA-directed RNA polymerase III subunit RPC8 isoform X1 OS=Cucumis melo var. mak... [more]
BLAST of Carg13399 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G06790.26.5e-1055.77RNA polymerase Rpb7 N-terminal domain-containing protein [more]
AT1G06790.16.5e-1055.77RNA polymerase Rpb7 N-terminal domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilyGENE3D3.30.1490.120coord: 148..219
e-value: 2.4E-7
score: 32.9
IPR036898RNA polymerase Rpb7-like, N-terminal domain superfamilySUPERFAMILY88798N-terminal, heterodimerisation domain of RBP7 (RpoE)coord: 161..212

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13399-RACarg13399-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006384 transcription initiation from RNA polymerase III promoter
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity