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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGGTTAGTACCTGTGAACATCTGTTTTCTGGTTCTCATTTTCACGTTCCTTGTTCAACTATTCCAGGTCAGGTTACTACACTCTGGTTTTAAGATCAGCCAAGTTTTGATATCAGTAATCTAATCATTTAGTGCAGGACCACCTATACAACATTTCCAAATTGATTTTTCTTTATCCCTCTCTCTCCCTCCTCCTTTTCTGTACACAGAGATTTACAAATCTTCATCGTCAACATAAACACATAGATGCTCCTTAGCTTTGTTGTAGTCTTTATAGTTTTAGTTGAATTTCTAACTTCCCATTGAAGGCATGCACTCATCCTAGTCTTTTAGTGAAGCATCCTATGCTGGAACGAGTAACAACCAAATAAAATCTTACCCTTTTGTCTTGGTGATTCGTGCTATCCAAGGAAAGTGAAATGATGAAGAAACAACGCCTTTTCACATATTGTTCAGTGGGCATCAACGAGCTATTATTATCCACACCTTATTTTGTTCGACAGCAGAGACTGGGAGACCGTGCTACTTTAGAGAAAGACGTTCCTTACTCTCGTCGGTATGTCTCTCTCTCTCTTACATTCTAATTCACATTGCTTTCATCGAAGTAGTAACTCTGTGGGATTCTTTCATCTTTGCTACATCCACATGGGCATTGATTTGATTGCATAAAGTTAAAGTGAGTGTCATTAATGTATGCATAACCTTTGTTTAAACACAATTAAGAGTCAAGATATGCTCTAAACTCTCTTAAACCTGGTGGAAGTTGAATAGCCTTTTAACTATTTTCTGTAAATTTTTAATCAGTGTCAATTCAAATTGTTAG mRNA sequence AATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGTGTCAATTCAAATTGTTAG Coding sequence (CDS) ATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGTGTCAATTCAAATTGTTAG Protein sequence MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAVVSVNSNC
Homology
BLAST of Carg12169 vs. NCBI nr
Match: KAG7021822.1 (hypothetical protein SDJN02_15550 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWH 60
MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWH
Sbjct: 1 MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWH 60
Query: 61 YEKISAQNISIVAVVSVNSNC 82
YEKISAQNISIVAVVSVNSNC
Sbjct: 61 YEKISAQNISIVAVVSVNSNC 81
BLAST of Carg12169 vs. NCBI nr
Match: KAG6587934.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23 Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0
Query: 15 CFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAV 74
C L T+ PRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAV
Sbjct: 885 CAGLCTQAPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAV 944
Query: 75 V 76
V
Sbjct: 945 V 945
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAG7021822.1 | 1.4e-39 | 100.00 | hypothetical protein SDJN02_15550 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| KAG6587934.1 | 2.5e-23 | 91.80 | Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PROSITE | PS51257 | PROKAR_LIPOPROTEIN | coord: 1..15
score: 5.0 |
Relationships
The following mRNA feature(s) are a part of this gene:
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