Carg12169 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg12169
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 2546140 .. 2547187 (+)
RNA-Seq Expression	Carg12169
Synteny	Carg12169

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGGTTAGTACCTGTGAACATCTGTTTTCTGGTTCTCATTTTCACGTTCCTTGTTCAACTATTCCAGGTCAGGTTACTACACTCTGGTTTTAAGATCAGCCAAGTTTTGATATCAGTAATCTAATCATTTAGTGCAGGACCACCTATACAACATTTCCAAATTGATTTTTCTTTATCCCTCTCTCTCCCTCCTCCTTTTCTGTACACAGAGATTTACAAATCTTCATCGTCAACATAAACACATAGATGCTCCTTAGCTTTGTTGTAGTCTTTATAGTTTTAGTTGAATTTCTAACTTCCCATTGAAGGCATGCACTCATCCTAGTCTTTTAGTGAAGCATCCTATGCTGGAACGAGTAACAACCAAATAAAATCTTACCCTTTTGTCTTGGTGATTCGTGCTATCCAAGGAAAGTGAAATGATGAAGAAACAACGCCTTTTCACATATTGTTCAGTGGGCATCAACGAGCTATTATTATCCACACCTTATTTTGTTCGACAGCAGAGACTGGGAGACCGTGCTACTTTAGAGAAAGACGTTCCTTACTCTCGTCGGTATGTCTCTCTCTCTCTTACATTCTAATTCACATTGCTTTCATCGAAGTAGTAACTCTGTGGGATTCTTTCATCTTTGCTACATCCACATGGGCATTGATTTGATTGCATAAAGTTAAAGTGAGTGTCATTAATGTATGCATAACCTTTGTTTAAACACAATTAAGAGTCAAGATATGCTCTAAACTCTCTTAAACCTGGTGGAAGTTGAATAGCCTTTTAACTATTTTCTGTAAATTTTTAATCAGTGTCAATTCAAATTGTTAG

mRNA sequence

AATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGTGTCAATTCAAATTGTTAG

Coding sequence (CDS)

ATGAAGATTGCTAACTTTCATTCACCATGCACTGTATTTGGATGTTTTTCTCTTCTTACAAAGCAGCCAAGATATTACACCCTACAGGACTTGGTTGTATGGTTTTTGAGAATTGGAGACATGCAAGCAAATTTCAGTTCCCGAATTGTCACCACACCGGCAGATTACAGGAACTGGCACTATGAAAAGATCTCAGCACAAAACATCAGTATTGTTGCTGTTGTCAGTGTCAATTCAAATTGTTAG

Protein sequence

MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAVVSVNSNC

Homology

[Close]

BLAST of Carg12169 vs. NCBI nr
Match: KAG7021822.1 (hypothetical protein SDJN02_15550 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWH 60
          MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWH
Sbjct: 1  MKIANFHSPCTVFGCFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWH 60

Query: 61 YEKISAQNISIVAVVSVNSNC 82
          YEKISAQNISIVAVVSVNSNC
Sbjct: 61 YEKISAQNISIVAVVSVNSNC 81

[Close]

BLAST of Carg12169 vs. NCBI nr
Match: KAG6587934.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 15  CFSLLTKQPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAV 74
           C  L T+ PRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAV
Sbjct: 885 CAGLCTQAPRYYTLQDLVVWFLRIGDMQANFSSRIVTTPADYRNWHYEKISAQNISIVAV 944

Query: 75  V 76
           V
Sbjct: 945 V 945

The following BLAST results are available for this feature:

BLAST of Carg12169 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021822.1	1.4e-39	100.00	hypothetical protein SDJN02_15550 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6587934.1	2.5e-23	91.80	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]

BLAST of Carg12169 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12169 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg12169 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..15 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12169-RA	Carg12169-RA	mRNA