Carg11356 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11356
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein ROOT INITIATION DEFECTIVE 3-like
Location	Carg_Chr16: 2393568 .. 2394893 (+)
RNA-Seq Expression	Carg11356
Synteny	Carg11356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAATGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCAATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGAGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCATGATTGTTGTCATGCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATACTGATTCAGTGACTTCCATTTACTCTGTCATGGGTATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGATCTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCCCCAAAGCACGATGCTGCAGTTGTATCTGTAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGCGGCAGCCATGGGAGAGCAATGAAACGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCTGGCTACAATCAAAGAGAAGAAATACAAAGATGA

mRNA sequence

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAATGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCAATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGAGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCATGATTGTTGTCATGCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATACTGATTCAGTGACTTCCATTTACTCTGTCATGGGTATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGATCTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCCCCAAAGCACGATGCTGCAGTTGTATCTGTAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGCGGCAGCCATGGGAGAGCAATGAAACGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCTGGCTACAATCAAAGAGAAGAAATACAAAGATGA

Coding sequence (CDS)

ATGAGTATGCCATTTTCTCCACAAGAAGTTGTCCTGGCCAGCTCTCCTGATGGCCCCATTGTTGCCTATGATGCCTCCACAGGCACCCCTCTAGCCAGTTTCAATGATAGCCGTTCGCCTCGCCGTGGTATCACCCGAGCTGGGCGGAGTTCCATCGCCGTCTCCCACATCTGCCCAATCACTGCTTCGGGTTCAATCCACATTTATAATTGGTGGAATTCATCTGCCTTCCAGAGTATCACTGTACCTGAACCTGTTGCTCCTCTCACAGCCACTCCTGATGGGTTTTATCTGTTTGCTGGTGGCCTTTCAGGCTGCATTCATACGCTCTCTCTTCCATCTGGAGATGTTCTCAACTCTTTACCCGCACACAGGAAATCAGTTTCTTGCCTTGAACTTAGCGCTGATGGGTCACTTCTCATTTCAGGTGGGGATGATGGCATGATTGTTGTCATGCCAATCTTTCAACTTGTTCAAGCCAAACCACAGGAAAATGCAACCAAACACATTCTACATCAGTTTTCAGCACATACTGATTCAGTGACTTCCATTTACTCTGTCATGGGTATGTCCAGTTCCCAAATAGTCTCAAGCTCAATGGATGGCAGATGCAAGTTCTGGAGCTTGCTCTCAGGAACAGTCTTGCACACCGTGGTGTTCCCTTGTGCCATTTTCAGTGTGGTCTTAGATCCATCAGAAACAGAGTTTTTCGCTGCAGGATCTGATGGGTTGGTGTACAAGGGCTCATTGAGACATAACATCAAACACCTTATAAGCACAGATTCTGAACTAACTCCACCAGCATCCGACGACTTGGCGTACAGGTGCTCATTGAGGCATAAAAACAAACACCTTATGGGCACAAGCTCTGAACTAATTTCATGGTCCCCAAAGCACGATGCTGCAGTTGTATCTGTAGTCATAATCAACGAAGGAAATAACTTAATATCTGCAGCAGAAGATGGGAACATCTGGGTCTGGCAAGTGAACAAGGGGCAGGTGATAATGACCCTCGAAAATGAGATGGGAAGCATAAGCGATTTGGTGATTGCCACAGAAAAAAGGCATGAAAAAGAACGAAATGTCAGAAGCGGCAGCCATGGGAGAGCAATGAAACGTGAGAGCTCTAGATTACCCAGTCCCATGTTGGGGTTATTGATAAATCAAACAGCTGAGATGCAAGGCGCGGTGGCGGCGGGCGGAAGCGACGTGAGAAGAGCCATTGAGTTGCTGGAATCTGCCATCGCTATGTATGAGAAGATGTTGGAGCTAATCTTGAAGGAAGCCAAAGCTGGCTACAATCAAAGAGAAGAAATACAAAGATGA

Protein sequence

MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNVRSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKMLELILKEAKAGYNQREEIQR

Homology

[Close]

BLAST of Carg11356 vs. NCBI nr
Match: KAG7015046.1 (Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 862.4 bits (2227), Expect = 1.6e-246
Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 0


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI
Sbjct: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS
Sbjct: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG
Sbjct: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD
Sbjct: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300

Query: 301 AAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER
Sbjct: 301 AAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360

Query: 361 NVRSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEK 420
           NVRSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEK
Sbjct: 361 NVRSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEK 420

Query: 421 MLELILKEAKAGYNQREEIQR 442
           MLELILKEAKAGYNQREEIQR
Sbjct: 421 MLELILKEAKAGYNQREEIQR 441

[Close]

BLAST of Carg11356 vs. NCBI nr
Match: KAG6577024.1 (Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 862.1 bits (2226), Expect = 2.1e-246
Identity = 440/441 (99.77%), Postives = 441/441 (100.00%), Query Frame = 0


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI
Sbjct: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS
Sbjct: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG
Sbjct: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD
Sbjct: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300

Query: 301 AAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVS+VIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER
Sbjct: 301 AAVVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360

Query: 361 NVRSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEK 420
           NVRSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEK
Sbjct: 361 NVRSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEK 420

Query: 421 MLELILKEAKAGYNQREEIQR 442
           MLELILKEAKAGYNQREEIQR
Sbjct: 421 MLELILKEAKAGYNQREEIQR 441

[Close]

BLAST of Carg11356 vs. NCBI nr
Match: XP_022922571.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata])

HSP 1 Score: 850.9 bits (2197), Expect = 4.9e-243
Identity = 433/439 (98.63%), Postives = 436/439 (99.32%), Query Frame = 0


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICP+TA
Sbjct: 1   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
Sbjct: 61  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT
Sbjct: 121 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG+D
Sbjct: 181 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GLVYK SLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA
Sbjct: 241 GLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 300

Query: 303 VVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+VIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDL IATEKRHEKERNV
Sbjct: 301 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKERNV 360

Query: 363 RSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 422
           R GSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
Sbjct: 361 RRGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 420

Query: 423 ELILKEAKAGYNQREEIQR 442
           ELILKEAKAGYNQREEIQR
Sbjct: 421 ELILKEAKAGYNQREEIQR 439

[Close]

BLAST of Carg11356 vs. NCBI nr
Match: XP_023552864.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 842.0 bits (2174), Expect = 2.3e-240
Identity = 429/439 (97.72%), Postives = 433/439 (98.63%), Query Frame = 0


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA
Sbjct: 1   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
Sbjct: 61  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AHRKSVSCLELSADGSLLISGGDDG IVV+PIFQLVQAKPQENATKHILHQFSAH DSVT
Sbjct: 121 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPC IFSVVLDPSETEFFAAG+D
Sbjct: 181 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GLVYKGSLRHNIKHLI TDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH+AA
Sbjct: 241 GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA 300

Query: 303 VVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+VIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV
Sbjct: 301 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 360

Query: 363 RSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 422
           R GSHGRAMK ESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
Sbjct: 361 RRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 420

Query: 423 ELILKEAKAGYNQREEIQR 442
           ELILKEAKAGYNQREEIQR
Sbjct: 421 ELILKEAKAGYNQREEIQR 439

[Close]

BLAST of Carg11356 vs. NCBI nr
Match: XP_022985124.1 (protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita maxima])

HSP 1 Score: 837.4 bits (2162), Expect = 5.6e-239
Identity = 429/439 (97.72%), Postives = 433/439 (98.63%), Query Frame = 0


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDS SPRRGITRAGRSSIAVSHICPITA
Sbjct: 1   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
Sbjct: 61  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AHRKSVSCLELSADGSLLISGGDDG IVV+PIFQLVQAKPQENATKHILHQFSAH DSVT
Sbjct: 121 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD
Sbjct: 181 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GLVYKGSLRHNIKHLISTDSELTPPASD+LAYRCSLRHKNKHLMGTSSELISWSPKHDAA
Sbjct: 241 GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 300

Query: 303 VVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+VIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV
Sbjct: 301 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 360

Query: 363 RSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 422
           R GSHGRAMK ESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
Sbjct: 361 RRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 420

Query: 423 ELILKEAKAGYNQREEIQR 442
           ELILKEAKAGYNQ+ EIQR
Sbjct: 421 ELILKEAKAGYNQK-EIQR 438

[Close]

BLAST of Carg11356 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.4e-37
Identity = 107/335 (31.94%), Postives = 154/335 (45.97%), Query Frame = 0


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVTSIYSVMG 189
           CL  S D SLL+SG  DG I V  + +L     ++       H F+ HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGS 249
             ++ I+SSS D  CK WSL  G +L  ++FP  I ++ LDP    F+A   D  +Y G+
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 LRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSVVII 309
                   I+  SE                     ++G+ SE          A+  +   
Sbjct: 245 --------INATSEY-----------------GTQVLGSVSE-------KGKAITCLAYC 304

Query: 310 NEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS 345
            +GN LIS +EDG + VW     + + TL +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

[Close]

BLAST of Carg11356 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-23
Identity = 85/351 (24.22%), Postives = 162/351 (46.15%), Query Frame = 0


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P E+VL++   G +     ++  TG+ L ++    +  RG+   G   +    +     
Sbjct: 3   APLELVLSADAAGQVANCTVWEPVTGSVLLTYRGGNTSHRGLAVLGGQYLLGGQL----- 62

Query: 66  SGSIHIYNW---WNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  L+A+P+G YL A G++  I+   + +G +L 
Sbjct: 63  -GKNYINVWELQRRDQLQQKIVCPGPVNCLSASPNGLYLVA-GIAESIYLWEVSTGHLLA 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L +H + V+CL  + D S +ISG  D +++V  ++ ++Q +          + +S H+ 
Sbjct: 123 ILNSHYQDVTCLTFTDDSSHIISGAKDSLVLVWGLYSVLQVETSRGPEPR--YVWSRHSL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T +   +G   +++ +SS+D   K W + SG +L +V+F   I SV  DP+E   F  
Sbjct: 183 PITDVQCGIGGPQARVATSSLDQTIKLWDICSGDLLVSVLFDVRITSVAFDPAEYHLFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GSDG++Y+             D   TP              + +       E++    ++
Sbjct: 243 GSDGVIYQ------------VDLYTTP-------------EQRERPFHPEQEMVFKGHRN 302

Query: 306 DAAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVI 351
               +SV +  +G+ LIS + D  + VW +   Q + ++ +  G ++++ I
Sbjct: 303 QVTCLSVSL--DGSMLISGSHDETVCVWDIQSKQSLRSVPHR-GPVTNVFI 316

[Close]

BLAST of Carg11356 vs. ExPASy Swiss-Prot
Match: Q9BV38 (WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-23
Identity = 84/339 (24.78%), Postives = 154/339 (45.43%), Query Frame = 0


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P EV + +    P+   + ++  +G  L ++   ++  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNW---WNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LTA+P+G Y+ A G++  IH   + +G++L 
Sbjct: 63  -GKNYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLA-GVAESIHLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L  H + VSCL+ + D S  ISGG D +++V  +  ++QA P         H +S H  
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQADPSRIPAPR--HVWSHHAL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ +SS+D   K W + SG +L +V+F  +I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GS+G +++  L              T P           R ++ H    + ++      H
Sbjct: 243 GSEGSIFQVDL-------------FTWPGQ---------RERSFHPEQDAGKVFK---GH 302

Query: 306 DAAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D  + +W V   Q I T+
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQCIRTV 307

[Close]

BLAST of Carg11356 vs. ExPASy Swiss-Prot
Match: Q68EI0 (WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-22
Identity = 90/351 (25.64%), Postives = 150/351 (42.74%), Query Frame = 0


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P EVVL++   G +     YD  TG+   S+    +  R +T      I  + +     
Sbjct: 3   APVEVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL----- 62

Query: 66  SGSIHIYNW---WNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P  V  L A+PDG Y+ A G++  I+   + +G++L 
Sbjct: 63  -GKNYINVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLA-GIAEAIYLWEVSTGNLLA 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L  H + +SC++ + D S  +SGG D +  +  +  +VQ     + T    H  S H+ 
Sbjct: 123 ILSRHFQDLSCIKFTDDSSHFVSGGKDNLAFIWNLSSVVQL--DSSRTPEPRHILSRHSL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T I+  +    +++ ++S+D   K W + SG +L +V+F   I SV  DP E   F  
Sbjct: 183 PITDIHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GSDG +++ SL                         CS          + SE       H
Sbjct: 243 GSDGNIFQVSL-------------------------CSTSLSRDKTFQSDSEGNQVFKGH 302

Query: 306 DAAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVI 351
              V  + +  +G  L+S + D  + +W V   Q I T+ N  G +++  I
Sbjct: 303 RNLVTCLSVSMDGTVLLSGSNDETVRMWDVQSKQCIWTI-NHRGPVTNAAI 318

[Close]

BLAST of Carg11356 vs. ExPASy Swiss-Prot
Match: Q3SZD4 (WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.1e-22
Identity = 83/339 (24.48%), Postives = 151/339 (44.54%), Query Frame = 0


Query: 6   SPQEVVLASSPDGPI---VAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 65
           +P EV + +     +   V ++  +G  L ++   ++  RG+       +  + +     
Sbjct: 3   APMEVAVCTDSAAQLWSCVVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----- 62

Query: 66  SGSIHIYNW---WNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLN 125
            G  +I  W         Q I  P PV  LT +P+G Y+ A G+S  I+   + +G++L 
Sbjct: 63  -GKNYICAWELQRKDQLQQKIMCPGPVTCLTTSPNGLYVLA-GISENIYLWEVSTGNLLV 122

Query: 126 SLPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTD 185
            L  H + VSCL+ + D S  ISGG D +++   +  ++QA P         H +S HT 
Sbjct: 123 ILSRHYQDVSCLQFTGDSSHFISGGKDCLVLAWSLCSVLQADPSRTPAPR--HVWSRHTL 182

Query: 186 SVTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAA 245
            +T ++   G   +++ ++S+D   K W + SG +L +V+F   I +V +D +E   F  
Sbjct: 183 PITDLHCGFGGPLARVATASLDQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCG 242

Query: 246 GSDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKH 305
           GSDG +++  L              T P   + +++    H  K   G           H
Sbjct: 243 GSDGSIFQVDL-------------CTWPGQREKSFQPEQEH-GKVFRG-----------H 302

Query: 306 DAAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTL 339
              V  + +  +G+ L+S + D  + +W V   Q + T+
Sbjct: 303 RNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTV 307

[Close]

BLAST of Carg11356 vs. ExPASy TrEMBL
Match: A0A6J1E4H4 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430540 PE=4 SV=1)

HSP 1 Score: 850.9 bits (2197), Expect = 2.4e-243
Identity = 433/439 (98.63%), Postives = 436/439 (99.32%), Query Frame = 0


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICP+TA
Sbjct: 1   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPVTA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
Sbjct: 61  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT
Sbjct: 121 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG+D
Sbjct: 181 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGTD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GLVYK SLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA
Sbjct: 241 GLVYKDSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 300

Query: 303 VVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+VIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDL IATEKRHEKERNV
Sbjct: 301 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLAIATEKRHEKERNV 360

Query: 363 RSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 422
           R GSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
Sbjct: 361 RRGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 420

Query: 423 ELILKEAKAGYNQREEIQR 442
           ELILKEAKAGYNQREEIQR
Sbjct: 421 ELILKEAKAGYNQREEIQR 439

[Close]

BLAST of Carg11356 vs. ExPASy TrEMBL
Match: A0A6J1JCF3 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483208 PE=4 SV=1)

HSP 1 Score: 837.4 bits (2162), Expect = 2.7e-239
Identity = 429/439 (97.72%), Postives = 433/439 (98.63%), Query Frame = 0


Query: 3   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA 62
           MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDS SPRRGITRAGRSSIAVSHICPITA
Sbjct: 1   MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSHSPRRGITRAGRSSIAVSHICPITA 60

Query: 63  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 122
           SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
Sbjct: 61  SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP 120

Query: 123 AHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVT 182
           AHRKSVSCLELSADGSLLISGGDDG IVV+PIFQLVQAKPQENATKHILHQFSAH DSVT
Sbjct: 121 AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT 180

Query: 183 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 242
           SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD
Sbjct: 181 SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSD 240

Query: 243 GLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 302
           GLVYKGSLRHNIKHLISTDSELTPPASD+LAYRCSLRHKNKHLMGTSSELISWSPKHDAA
Sbjct: 241 GLVYKGSLRHNIKHLISTDSELTPPASDNLAYRCSLRHKNKHLMGTSSELISWSPKHDAA 300

Query: 303 VVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 362
           VVS+VIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV
Sbjct: 301 VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV 360

Query: 363 RSGSHGRAMKRESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 422
           R GSHGRAMK ESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
Sbjct: 361 RRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML 420

Query: 423 ELILKEAKAGYNQREEIQR 442
           ELILKEAKAGYNQ+ EIQR
Sbjct: 421 ELILKEAKAGYNQK-EIQR 438

[Close]

BLAST of Carg11356 vs. ExPASy TrEMBL
Match: A0A5A7UZU9 (Protein ROOT INITIATION DEFECTIVE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00860 PE=4 SV=1)

HSP 1 Score: 698.7 bits (1802), Expect = 1.5e-197
Identity = 357/441 (80.95%), Postives = 392/441 (88.89%), Query Frame = 0


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGTPLA+FN SRSPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYLFAGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAH+K VSCL+LSADGSLLISGGDDG IVVMPIFQLVQAKP+ENAT+HILHQF AHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS++IVS S+D RCKFWSLLSGT+LHTVVFPCAIFSVVL+PSE EFFAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSLRHN KH   TD +L P  S+DL Y+ SLRHKNKHL GTS ELI WSPKH+
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSFELIPWSPKHE 300

Query: 301 AAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVS+VI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 NVRSGSHGRAMK-RESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            VR+  HGR +K  E  RLP  MLGL I +T +MQG +AA GSDVRRAIE+LESAIA+YE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEA+A YNQREE Q
Sbjct: 421 KMLELILKEAEASYNQREETQ 441

[Close]

BLAST of Carg11356 vs. ExPASy TrEMBL
Match: A0A5D3CYC7 (Protein ROOT INITIATION DEFECTIVE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00370 PE=4 SV=1)

HSP 1 Score: 698.7 bits (1802), Expect = 1.5e-197
Identity = 357/441 (80.95%), Postives = 392/441 (88.89%), Query Frame = 0


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGTPLA+FN SRSPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYL AGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLLAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAH+K VSCL+LSADGSLLISGGDDG IVVMPIFQLVQAKP+ENAT+HILHQF AHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS++IVS S+D RCKFWSLLSGT+LHTVVFPCAIFSVVL+PSE EFFAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSLRHN KH   TD +L P  S+DL Y+ SLRHKNKHL GTSSELI WSPKH+
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSSELIPWSPKHE 300

Query: 301 AAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVS+VI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 NVRSGSHGRAMK-RESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            VR+  HGR +K  E  RLP  MLGL I +T +MQG +AA GSDVRRAIE+LESAIA+YE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEA+A YNQREE Q
Sbjct: 421 KMLELILKEAEASYNQREETQ 441

[Close]

BLAST of Carg11356 vs. ExPASy TrEMBL
Match: A0A1S3BRK4 (protein ROOT INITIATION DEFECTIVE 3-like OS=Cucumis melo OX=3656 GN=LOC103492937 PE=4 SV=1)

HSP 1 Score: 698.7 bits (1802), Expect = 1.5e-197
Identity = 357/441 (80.95%), Postives = 392/441 (88.89%), Query Frame = 0


Query: 1   MSMPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPI 60
           M+MP SPQEVVLASSPDGPIVAYDASTGTPLA+FN SRSPRRGITRAG+S IAVSHICP+
Sbjct: 1   MTMPSSPQEVVLASSPDGPIVAYDASTGTPLANFNSSRSPRRGITRAGKSFIAVSHICPV 60

Query: 61  TASGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNS 120
           TASGSIHIYNWW SSAFQ +TVPEPVAPLTATPDGFYL AGGLSG IH LSLPSGDVLNS
Sbjct: 61  TASGSIHIYNWWTSSAFQCLTVPEPVAPLTATPDGFYLLAGGLSGYIHILSLPSGDVLNS 120

Query: 121 LPAHRKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDS 180
           LPAH+K VSCL+LSADGSLLISGGDDG IVVMPIFQLVQAKP+ENAT+HILHQF AHTDS
Sbjct: 121 LPAHKKPVSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRENATEHILHQFLAHTDS 180

Query: 181 VTSIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAG 240
           VTSIYS MG+SS++IVS S+D RCKFWSLLSGT+LHTVVFPCAIFSVVL+PSE EFFAAG
Sbjct: 181 VTSIYSGMGISSTKIVSCSLDARCKFWSLLSGTILHTVVFPCAIFSVVLEPSEIEFFAAG 240

Query: 241 SDGLVYKGSLRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHD 300
           SDGLVYKGSLRHN KH   TD +L P  S+DL Y+ SLRHKNKHL GTSSELI WSPKH+
Sbjct: 241 SDGLVYKGSLRHNNKHRRGTDYDLIPQISNDLVYKRSLRHKNKHLTGTSSELIPWSPKHE 300

Query: 301 AAVVSVVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKER 360
           AAVVS+VI+NEG +LISAAEDG+IWVW+V KGQVIM LENEMGSISDLV+ATE+ H KE+
Sbjct: 301 AAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQVIMALENEMGSISDLVMATERAHGKEQ 360

Query: 361 NVRSGSHGRAMK-RESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYE 420
            VR+  HGR +K  E  RLP  MLGL I +T +MQG +AA GSDVRRAIE+LESAIA+YE
Sbjct: 361 CVRTDRHGREIKISERFRLPIKMLGLSIKETVDMQGELAAAGSDVRRAIEMLESAIAVYE 420

Query: 421 KMLELILKEAKAGYNQREEIQ 441
           KMLELILKEA+A YNQREE Q
Sbjct: 421 KMLELILKEAEASYNQREETQ 441

[Close]

BLAST of Carg11356 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 3.2e-38
Identity = 107/335 (31.94%), Postives = 154/335 (45.97%), Query Frame = 0


Query: 10  VVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITASGSIHIY 69
           V+ +SS D  I ++D  TGT    F    SP  G+T  G   +A S +     SGSI  +
Sbjct: 5   VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query: 70  NWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVS 129
           +W    A       EP+  L A  +G YL  GG+SG I+   + +G +L     H +SV+
Sbjct: 65  SWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVT 124

Query: 130 CLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHILHQFSAHTDSVTSIYSVMG 189
           CL  S D SLL+SG  DG I V  + +L     ++       H F+ HT SVT I    G
Sbjct: 125 CLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYG 184

Query: 190 MSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGS 249
             ++ I+SSS D  CK WSL  G +L  ++FP  I ++ LDP    F+A   D  +Y G+
Sbjct: 185 GCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGA 244

Query: 250 LRHNIKHLISTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHDAAVVSVVII 309
                   I+  SE                     ++G+ SE          A+  +   
Sbjct: 245 --------INATSEY-----------------GTQVLGSVSE-------KGKAITCLAYC 304

Query: 310 NEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGS 345
            +GN LIS +EDG + VW     + + TL +  GS
Sbjct: 305 ADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGS 307

[Close]

BLAST of Carg11356 vs. TAIR 10
Match: AT1G58230.1 (binding )

HSP 1 Score: 56.6 bits (135), Expect = 5.8e-08
Identity = 45/181 (24.86%), Postives = 74/181 (40.88%), Query Frame = 0


Query: 94   DGFYLFAGGLSGCIHTLSLPSGDVLNSLPAHRKSVSCLELSADGSLLISGGDDGMIVVMP 153
            + F +  G      H +SL  G V+ S+  H+  VSC+ ++AD ++L +G  D  ++V  
Sbjct: 2339 ENFLVSCGNWENSFHVISLTDGRVVQSIRHHKDVVSCVAVTADSTILATGSYDTTVMVWD 2398

Query: 154  IFQL-VQAKPQENATKHIL-----------HQFSAHTDSVTSIYSVMGMSSSQIVSSSMD 213
            I ++    K   N    +L           H    H D +T +Y  +      ++S S D
Sbjct: 2399 ILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLY--VSTDLDIVISGSKD 2458

Query: 214  GRCKFWSLLSGTVLHTVVFPCAIFSVVLDPSETEFFAAGSDGLVYKGSLRHNIKHLISTD 263
            G C F +L  G  + ++  P       L  S         D  +       N KHL S++
Sbjct: 2459 GTCVFHTLREGRYIRSLKHPSGSAVSKLAASHHGRIVLYGDDDLSLHLYSINGKHLASSE 2517

[Close]

BLAST of Carg11356 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-05
Identity = 52/248 (20.97%), Postives = 103/248 (41.53%), Query Frame = 0


Query: 11  VLASSPDGPIVAYDASTGTPL------ASFNDSRSPRRGITRAGRSSIAVSHICPITASG 70
           ++++SPD  + A+D  TG  +      +SF +S  P    TR G   I        +  G
Sbjct: 111 IVSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCP----TRRGPPLIISG-----SDDG 170

Query: 71  SIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLPAH 130
           +  +++     A Q+      +  ++ +     +F GG+   +    L  G+   +L  H
Sbjct: 171 TAKLWDMRQRGAIQTFPDKYQITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGH 230

Query: 131 RKSVSCLELSADGSLLISGGDDGMIVVMPIFQLVQAKPQENATKHIL-HQFSAHTDSVTS 190
           + +++ + LS DGS L++ G D  + V   + +    PQ    K    HQ +   + +  
Sbjct: 231 QDTITGMSLSPDGSYLLTNGMDNKLCV---WDMRPYAPQNRCVKIFEGHQHNFEKNLLKC 290

Query: 191 IYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVV-FPCAIFSVVLDPSETEFFAAGSD 250
            +S  G   +++ + S D     W   S   ++ +     ++   V  P+E    +  SD
Sbjct: 291 SWSPDG---TKVTAGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSD 343

The following BLAST results are available for this feature:

BLAST of Carg11356 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015046.1	1.6e-246	100.00	Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG6577024.1	2.1e-246	99.77	Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022922571.1	4.9e-243	98.63	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita moschata]	[more]
XP_023552864.1	2.3e-240	97.72	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985124.1	5.6e-239	97.72	protein ROOT INITIATION DEFECTIVE 3-like [Cucurbita maxima]	[more]

BLAST of Carg11356 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	4.4e-37	31.94	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	1.6e-23	24.22	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q9BV38	4.8e-23	24.78	WD repeat-containing protein 18 OS=Homo sapiens OX=9606 GN=WDR18 PE=1 SV=2	[more]
Q68EI0	1.1e-22	25.64	WD repeat-containing protein 18 OS=Danio rerio OX=7955 GN=wdr18 PE=2 SV=1	[more]
Q3SZD4	3.1e-22	24.48	WD repeat-containing protein 18 OS=Bos taurus OX=9913 GN=WDR18 PE=2 SV=1	[more]

BLAST of Carg11356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4H4	2.4e-243	98.63	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JCF3	2.7e-239	97.72	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5A7UZU9	1.5e-197	80.95	Protein ROOT INITIATION DEFECTIVE 3-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CYC7	1.5e-197	80.95	Protein ROOT INITIATION DEFECTIVE 3-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BRK4	1.5e-197	80.95	protein ROOT INITIATION DEFECTIVE 3-like OS=Cucumis melo OX=3656 GN=LOC103492937...	[more]

BLAST of Carg11356 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	3.2e-38	31.94	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G58230.1	5.8e-08	24.86	binding	[more]
AT2G43770.1	1.6e-05	20.97	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 408..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..374
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 356..376
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 3..438
None	No IPR available	PANTHER	PTHR18763:SF3	OS09G0477800 PROTEIN	coord: 3..438
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 296..333 score: 8.781968
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 114..153 e-value: 1.4E-4 score: 31.2 coord: 289..328 e-value: 0.0095 score: 25.1 coord: 167..208 e-value: 0.0041 score: 26.3 coord: 211..249 e-value: 85.0 score: 4.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 171..208 e-value: 0.01 score: 16.7 coord: 117..150 e-value: 9.7E-5 score: 23.1
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 296..337 score: 11.912015
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 174..217 score: 9.03805
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 121..151 score: 9.773251
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 160..263 e-value: 2.3E-11 score: 45.4
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..159 e-value: 6.7E-16 score: 60.2
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 277..367 e-value: 3.5E-7 score: 31.4
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	SUPERFAMILY	50998	Quinoprotein alcohol dehydrogenase-like	coord: 10..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11356-RA	Carg11356-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005656	nuclear pre-replicative complex
cellular_component	GO:0097344	Rix1 complex
molecular_function	GO:0005515	protein binding