|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. AGCAAGAGTGCAACCGCCTTCACATGCTCCTCCACTTCACGGCGGTTCTTTTCCTTCTCTATTACCGGATCACCGCCGCATTCCGTCGCAACGACGTCGTCTCTCCCCTACTTTGGGCTCTCTGCGCCATCGCAGAACAACTCATCTTCACCTTCGCTTGGGTCCTAACCCAGTCGTTCCGATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGGTAATGAACTCCTCCACGACCCTTTCCTCTTACATGGAGGTTCTTGCAGGCTACCTGTTTGTTAAAATGCCATGTTTCTGGGTTTCGTTTTCTAGACTAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATTTCTTGAGGAGGAAGACGTTGAATGCAAAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCTTCTCAAATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGAAAGGCATCCCCTTCTTCTCCCCACAATTTATTAATAATTCATTAAAACTAATAGTCAATTATAAATTTA mRNA sequence AGCAAGAGTGCAACCGCCTTCACATGCTCCTCCACTTCACGGCGGTTCTTTTCCTTCTCTATTACCGGATCACCGCCGCATTCCGTCGCAACGACGTCGTCTCTCCCCTACTTTGGGCTCTCTGCGCCATCGCAGAACAACTCATCTTCACCTTCGCTTGGGTCCTAACCCAGTCGTTCCGATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGACTAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATTTCTTGAGGAGGAAGACGTTGAATGCAAAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCTTCTCAAATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGAAAGGCATCCCCTTCTTCTCCCCACAATTTATTAATAATTCATTAAAACTAATAGTCAATTATAAATTTA Coding sequence (CDS) ATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGACTAAGTGGCGTGGAATGGATGGGGTAA Protein sequence MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLPVGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG
Homology
BLAST of Carg10947 vs. NCBI nr
Match: KAG6593854.1 (hypothetical protein SDJN03_13330, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60 MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP Sbjct: 1 MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60
Query: 61 VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 105 VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG Sbjct: 61 VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 104
BLAST of Carg10947 vs. NCBI nr
Match: KAG7026186.1 (hypothetical protein SDJN02_12685 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 Query: 1 MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60 MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP Sbjct: 1 MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60
Query: 61 VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 105 VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG Sbjct: 61 VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 104
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6593854.1 | 2.6e-49 | 100.00 | hypothetical protein SDJN03_13330, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7026186.1 | 2.6e-49 | 100.00 | hypothetical protein SDJN02_12685 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..41 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..63 |
Relationships
The following mRNA feature(s) are a part of this gene:
|