Carg10947 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10947
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr08: 6477979 .. 6479039 (+)
RNA-Seq Expression	Carg10947
Synteny	Carg10947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAAGAGTGCAACCGCCTTCACATGCTCCTCCACTTCACGGCGGTTCTTTTCCTTCTCTATTACCGGATCACCGCCGCATTCCGTCGCAACGACGTCGTCTCTCCCCTACTTTGGGCTCTCTGCGCCATCGCAGAACAACTCATCTTCACCTTCGCTTGGGTCCTAACCCAGTCGTTCCGATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGGTAATGAACTCCTCCACGACCCTTTCCTCTTACATGGAGGTTCTTGCAGGCTACCTGTTTGTTAAAATGCCATGTTTCTGGGTTTCGTTTTCTAGACTAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATTTCTTGAGGAGGAAGACGTTGAATGCAAAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCTTCTCAAATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGAAAGGCATCCCCTTCTTCTCCCCACAATTTATTAATAATTCATTAAAACTAATAGTCAATTATAAATTTA

mRNA sequence

AGCAAGAGTGCAACCGCCTTCACATGCTCCTCCACTTCACGGCGGTTCTTTTCCTTCTCTATTACCGGATCACCGCCGCATTCCGTCGCAACGACGTCGTCTCTCCCCTACTTTGGGCTCTCTGCGCCATCGCAGAACAACTCATCTTCACCTTCGCTTGGGTCCTAACCCAGTCGTTCCGATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGACTAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATTTCTTGAGGAGGAAGACGTTGAATGCAAAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCTTCTCAAATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGAAAGGCATCCCCTTCTTCTCCCCACAATTTATTAATAATTCATTAAAACTAATAGTCAATTATAAATTTA

Coding sequence (CDS)

ATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGACTAAGTGGCGTGGAATGGATGGGGTAA

Protein sequence

MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLPVGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG

Homology

[Close]

BLAST of Carg10947 vs. NCBI nr
Match: KAG6593854.1 (hypothetical protein SDJN03_13330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60
           MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP
Sbjct: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60

Query: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 105
           VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG
Sbjct: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 104

[Close]

BLAST of Carg10947 vs. NCBI nr
Match: KAG7026186.1 (hypothetical protein SDJN02_12685 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60
           MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP
Sbjct: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60

Query: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 105
           VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG
Sbjct: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 104

The following BLAST results are available for this feature:

BLAST of Carg10947 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593854.1	2.6e-49	100.00	hypothetical protein SDJN03_13330, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7026186.1	2.6e-49	100.00	hypothetical protein SDJN02_12685 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg10947 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10947 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10947 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10947-RA	Carg10947-RA	mRNA