Carg10903 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10903
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein BUNDLE SHEATH DEFECTIVE 2, chloroplastic
LocationCarg_Chr05: 11437748 .. 11441167 (-)
RNA-Seq ExpressionCarg10903
SyntenyCarg10903
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCGAGGGATCTCGACGATCAAACACGGTATGAGGACGGTCTTGCAAACGAGCCATTTTTCATCTCAGCTGCTCAGATGAAGCATGTAAGCTCTTATAGTATATGAAGCTGCCCTTGAAACTTGCAGTTTGAAGTGATGATCGGATTGGATGAATCGAATCATATCGTATCGTATCAGTTCTTCATTTGCTGTTCATGCCGGATGTTTCCAGTTCATGACATTTTGATTGTAGCATTCTTCGGTTTGTTGCTAGTAGATATTGTAGACGATAACGTTCATTTTGTCACTAGATTCGAAACTTATCTTAAAACATTCAATATTGAAAACCACGAGAGTTAACCCGTAGTTGTATTCAATTTTGTTCTTCTTTCATGTTACCATATTACAAGATACAACATCTCCAATAAGAAGCTATGAGAAGATTATAAAACGATTAAAGGGTAACTTTAGACTAGGTATGTGAGATCTCATATCAACAAGCGCCAGTGAGGACATTGGGTCTTGAATGGAGTGGATTGTAAGATCCCACAACATTGGAAACCTCTCCTTAGTAGACGCCTTTTAAAAACTTGAAAACTCGAAAGGGAAAGCCAAAGAAGACAATGTCGGTTAGTGGTGAACTTGAGTATATGTTGTTTGACCATAGGTGACACAAATTCAAAATTGGCTTGACTCACTCGGTCTTGAGAGTGAATGTTGCACAGTCACAAAGTTTTTGAAAGCTTGTTACCAAAAAAAAGTACGATTGTGACACCCTTTACACGCTTGTCTTAGATGTCTTAGAGGAGTTCAGTGTAAAATTAAGCTTTAGAGGGCAATTTGGTAATTAAGTAGGAGAGGATTATGAGCCTTATCTGGTTAAATTTGCTTAATTTCCGACCAACTAAATCACAGACAAGACCATCACACACACAGCAGAAGCAGATGAGTAGCTCATCAGAAAGCTTCTGAATTTCAGTCCTTAAGAACAAATTCGAATCCAAAACCCCATTTAAATGGCATATTCCGTGGGTTCTTCCACACCCATTTGCTCCTTCAATCCCTCCAGCAAGCCCACGTCTGGTATTTTCTGCACTTTTCTCTGCATAAATTGCCTGGTTTTGTGTCTGTTTCTCCTTTCTTTTCACATTCTGAATGGGATTTTTGCTGCCAATTCAGTGCCTCATAAGGCTTTTCGGATAAATGAGGCGTTCCAAAGCACAAACCCCATTAGGCTTTTGCCTTGTGCGGCCAAGGTATGGTTTCTCTGCCCAGTTCTTTCCTACAAATGAAATGAACTTGTTTGGTTATGTCTGTCTTGTGGGCAAATTGTTGCAACTTTAGTGGATTGTCGAACTACAAATTGAACCCTGAGCTAGCTCCCTCTCATGGTTTTTAAAACACGTCTTCTATAGGGAGAGTTTACCTCTACTCCAACCAGTGTCTCGCACCGTCTAGTGATTGGCTTTGATACCATTTGTAACAATTCAAGCCTACCGCTAGCAAATATTATCCCTTTTGACCCGTTACGTATAAGGGGGTGGAAACCTTTCTTTAGTAGACACGTTCTTAAAACCTTGAGGGGAAGCCCGAAAGGAAAAGTCTAAAGAGGACAATATCTACTGGCGGTGGGCTTGGACTGTTACAAATGGTGTTAGAATCAGTCGGTGTGCCAGCGAAGACGCTGGACCCTTAAGGAGGGTGGATTGTGAGATCCCACGTCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAATCTCTTCTTAGTAGTCCCATTTCAAAAACCTTGAGAGAAAGTTTTAATGTTGCTTTGGCAGGTTTCAGATGGTGCAGATAGTAACCAAACCAGAAAAAACAAAAGCATACTTTGTTCTGACTGCAATGGAAATGGTGAGTGTTATCCATCTTTATTCCTCCACTTAATACATGGTTCTTCTGCTTAAATTCCCAACATTTCACTCAAACTTTTGAATGGTACAACCATAAATTAGACCCGTGACATGTGACGGTGTCAGTATTGGGACGCCGGGAATGGCGCTACGACTGTATCCCCTTCTTGGATGATTCTCCGTGCGCTGTATGTCACAATCGCACTTTTCTTGGCAGTAGACTTTGCGATTGTGCGGCACTCACTCCTAACACTAAGTGAGCCAAGCTAGTTTGTATTCGCGTCACCTATGGTCGAGCAACGTATGCTCAAGCCTCTGGCCTCGTTTGAGAAGAAGGTTTTCAAAAACAGGGTAGAGAGATTTTTGAAAGCGAGTCAGAAAGTAAGAATGAGAGAAGATTTAAAAGCAACGTTATATAACTATTAGCAAAAGGCAACACAATAGCTTAAACGACATATAACTTTTTGGGTACGGAGAATTTGACAACTAGTCGCATTCCCTTATATTACATTTTGAGGCGATTCAGGTCTAGCAGACCTAGACATGATTTCACCGAACATTCATACAAAATCAGGGGAAGGAGTTGACATCTAGTCACGCCCCCCTATAGTACATTTTGAAGTGATTTAGGTCTGGCACACCTAGACATGATTTCGCCGAGTAGCCATACAAATAGTAAGGCAATACAACATGAAATTAAATAAAGGATTCAGCGTGACATGAGCATGCGGCCATGGCAACACGCCCTGGACGAGTATGACCATGACACTGGGTATACCTCTTTTATGCGTCTGATACGTGGTAGGAACAGAATAGGAAAGACCCGACCGACCCGTCCCTCCAGGTTCCTCGTTTCTTAGATTGTGTTAGTAGTCTCTAAGATTGGGTTACTTTCAGCTGGTTGCTTGTGGCACAGTTTTTCTCTCCTCTGACCTTTTCCCTTGAAGTAAAATCAGAGAGCTTGAGCTTAGTTTACATATGTTTTTTCTTCTCAATTCTCAGGTGCTGTCCTATGTTCTCAGTGTAAAGGAACAGGAGTGAATTCAGTGGATCATTTCAATGGACAGTTCAAAGCTGGTAGCATATGCTGGCTCTGCAGGTATTGATGAACAAACTCTCCTTGCTCCACTGTAACCCGAAGCTAAAAAAGTCGAGCGTATGTTCTATGGACCTAAAGTCCCGTTCTGATGGCCCTAACGAGTCATCTACTTAAAAAGAACTCTCCCTACAGCGTGCCCATCTCCTAAGATACGAGAATTCCACGTTTGTATAACCATTGCATCTTAGTCTGATACATGCATAAACCAATTGAACTATACTCGAGTTGCCATAAACCATTTCATCTATTGGTCATTTCAATTGTAACCATCATTTGTTTCGAGATATCTGATGGGATTATCGTGTTATTAACTATTAAATTTGAGGTTCTAAAGTAGTTAATGTGTTTGACATTGCAGTGGCAAAAAGGACATCCTGTGTGGGGGCTGTAATGGAGCTGGTTTTATGGGTGGGTTTATGAGTACAGCTGACAGTTAG

mRNA sequence

ATGAACCCGAGGGATCTCGACGATCAAACACGGTATGAGGACGGTCTTGCAAACGAGCCATTTTTCATCTCAGCTGCTCAGATGAAGCATGTAAGCTCTTATAGTGCTGTCCTATGTTCTCAGTGTAAAGGAACAGGAGTGAATTCAGTGGATCATTTCAATGGACAGTTCAAAGCTGGTAGCATATGCTGGCTCTGCAGTGGCAAAAAGGACATCCTGTGTGGGGGCTGTAATGGAGCTGGTTTTATGGGTGGGTTTATGAGTACAGCTGACAGTTAG

Coding sequence (CDS)

ATGAACCCGAGGGATCTCGACGATCAAACACGGTATGAGGACGGTCTTGCAAACGAGCCATTTTTCATCTCAGCTGCTCAGATGAAGCATGTAAGCTCTTATAGTGCTGTCCTATGTTCTCAGTGTAAAGGAACAGGAGTGAATTCAGTGGATCATTTCAATGGACAGTTCAAAGCTGGTAGCATATGCTGGCTCTGCAGTGGCAAAAAGGACATCCTGTGTGGGGGCTGTAATGGAGCTGGTTTTATGGGTGGGTTTATGAGTACAGCTGACAGTTAG

Protein sequence

MNPRDLDDQTRYEDGLANEPFFISAAQMKHVSSYSAVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS
Homology
[Close]
BLAST of Carg10903 vs. NCBI nr
Match: KAG7030389.1 (hypothetical protein SDJN02_08736, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 2.8e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MNPRDLDDQTRYEDGLANEPFFISAAQMKHVSSYSAVLCSQCKGTGVNSVDHFNGQFKAG 60
          MNPRDLDDQTRYEDGLANEPFFISAAQMKHVSSYSAVLCSQCKGTGVNSVDHFNGQFKAG
Sbjct: 1  MNPRDLDDQTRYEDGLANEPFFISAAQMKHVSSYSAVLCSQCKGTGVNSVDHFNGQFKAG 60

Query: 61 SICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
          SICWLCSGKKDILCGGCNGAGFMGGFMSTADS
Sbjct: 61 SICWLCSGKKDILCGGCNGAGFMGGFMSTADS 92

[Close]
BLAST of Carg10903 vs. NCBI nr
Match: XP_023522471.1 (uncharacterized protein LOC111786453 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 7.8e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS
Sbjct: 74  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 130

[Close]
BLAST of Carg10903 vs. NCBI nr
Match: XP_022999180.1 (uncharacterized protein LOC111493642 [Cucurbita maxima] >XP_022999181.1 uncharacterized protein LOC111493642 [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 7.8e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS
Sbjct: 74  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 130

[Close]
BLAST of Carg10903 vs. NCBI nr
Match: XP_022946217.1 (uncharacterized protein LOC111450369 [Cucurbita moschata])

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AVLCSQCKGTGVNSVDHFNGQFKAGS CWLCSGKKDILCGGCNGAGFMGGFMSTADS
Sbjct: 74  AVLCSQCKGTGVNSVDHFNGQFKAGSTCWLCSGKKDILCGGCNGAGFMGGFMSTADS 130

[Close]
BLAST of Carg10903 vs. NCBI nr
Match: KAG6599402.1 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 8.7e-25
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTAD 92
           AVLCSQCKGTGVNSVDHFNGQFKAGS CWLCSGKKDILCGGCNGAGFMGGFMSTAD
Sbjct: 74  AVLCSQCKGTGVNSVDHFNGQFKAGSTCWLCSGKKDILCGGCNGAGFMGGFMSTAD 129

[Close]
BLAST of Carg10903 vs. ExPASy Swiss-Prot
Match: Q9SN73 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BSD2 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 37  VLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTAD 92
           V CSQCKG GVN +DHFNGQFKAG++CWLC GKK++LCG CNGAGF+GGF+ST D
Sbjct: 81  VACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGFIGGFLSTFD 135

[Close]
BLAST of Carg10903 vs. ExPASy Swiss-Prot
Match: Q9XF14 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Zea mays OX=4577 GN=BSD2 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-20
Identity = 39/56 (69.64%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTAD 92
           A++C++C+G GVNSVD+F G+FKAGS+CWLC GK++ILCG CNGAGF+GGF+ST D
Sbjct: 70  AIVCTKCEGNGVNSVDYFEGRFKAGSLCWLCRGKREILCGNCNGAGFLGGFLSTFD 125

[Close]
BLAST of Carg10903 vs. ExPASy TrEMBL
Match: A0A6J1KEM1 (uncharacterized protein LOC111493642 OS=Cucurbita maxima OX=3661 GN=LOC111493642 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.8e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS
Sbjct: 74  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 130

[Close]
BLAST of Carg10903 vs. ExPASy TrEMBL
Match: A0A6J1G351 (uncharacterized protein LOC111450369 OS=Cucurbita moschata OX=3662 GN=LOC111450369 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.4e-25
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AVLCSQCKGTGVNSVDHFNGQFKAGS CWLCSGKKDILCGGCNGAGFMGGFMSTADS
Sbjct: 74  AVLCSQCKGTGVNSVDHFNGQFKAGSTCWLCSGKKDILCGGCNGAGFMGGFMSTADS 130

[Close]
BLAST of Carg10903 vs. ExPASy TrEMBL
Match: A0A5A7V544 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00260 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AVLCSQCKGTGVNSVDHFNGQFKAG +CWLC GK+D+LCGGCNGAGF+GGFMSTADS
Sbjct: 81  AVLCSQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDVLCGGCNGAGFVGGFMSTADS 137

[Close]
BLAST of Carg10903 vs. ExPASy TrEMBL
Match: A0A1S3C5F0 (uncharacterized protein LOC103497244 OS=Cucumis melo OX=3656 GN=LOC103497244 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AVLCSQCKGTGVNSVDHFNGQFKAG +CWLC GK+D+LCGGCNGAGF+GGFMSTADS
Sbjct: 81  AVLCSQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDVLCGGCNGAGFVGGFMSTADS 137

[Close]
BLAST of Carg10903 vs. ExPASy TrEMBL
Match: A0A0A0LFZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006240 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.3e-23
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 36  AVLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTADS 93
           AV CSQCKGTGVNSVDHFNGQFKAG +CWLC GK+DILCGGCNGAGF+GGFMSTADS
Sbjct: 81  AVQCSQCKGTGVNSVDHFNGQFKAGGLCWLCRGKRDILCGGCNGAGFVGGFMSTADS 137

[Close]
BLAST of Carg10903 vs. TAIR 10
Match: AT3G47650.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-22
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 37  VLCSQCKGTGVNSVDHFNGQFKAGSICWLCSGKKDILCGGCNGAGFMGGFMSTAD 92
           V CSQCKG GVN +DHFNGQFKAG++CWLC GKK++LCG CNGAGF+GGF+ST D
Sbjct: 81  VACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVLCGDCNGAGFIGGFLSTFD 135

The following BLAST results are available for this feature:
BLAST of Carg10903 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030389.12.8e-47100.00hypothetical protein SDJN02_08736, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023522471.17.8e-26100.00uncharacterized protein LOC111786453 [Cucurbita pepo subsp. pepo][more]
XP_022999180.17.8e-26100.00uncharacterized protein LOC111493642 [Cucurbita maxima] >XP_022999181.1 uncharac... [more]
XP_022946217.13.0e-2598.25uncharacterized protein LOC111450369 [Cucurbita moschata][more]
KAG6599402.18.7e-2598.21Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, partial [Cucurbita argyrosperm... [more]
BLAST of Carg10903 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SN731.6e-2176.36Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
Q9XF142.3e-2069.64Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Zea mays OX=4577 GN=BSD2 PE=... [more]
BLAST of Carg10903 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KEM13.8e-26100.00uncharacterized protein LOC111493642 OS=Cucurbita maxima OX=3661 GN=LOC111493642... [more]
A0A6J1G3511.4e-2598.25uncharacterized protein LOC111450369 OS=Cucurbita moschata OX=3662 GN=LOC1114503... [more]
A0A5A7V5446.1e-2489.47Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3C5F06.1e-2489.47uncharacterized protein LOC103497244 OS=Cucumis melo OX=3656 GN=LOC103497244 PE=... [more]
A0A0A0LFZ22.3e-2389.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006240 PE=4 SV=1[more]
BLAST of Carg10903 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47650.11.1e-2276.36DnaJ/Hsp40 cysteine-rich domain superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.10.230.10coord: 25..84
e-value: 4.9E-5
score: 25.2
NoneNo IPR availablePANTHERPTHR15852:SF51PROTEIN BUNDLE SHEATH DEFECTIVE 2, CHLOROPLASTICcoord: 35..85
NoneNo IPR availablePANTHERPTHR15852PLASTID TRANSCRIPTIONALLY ACTIVE PROTEINcoord: 35..85
IPR036410Heat shock protein DnaJ, cysteine-rich domain superfamilySUPERFAMILY57938DnaJ/Hsp40 cysteine-rich domaincoord: 33..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10903-RACarg10903-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0061077 chaperone-mediated protein folding
cellular_component GO:0101031 chaperone complex
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0044183 protein folding chaperone