Carg09935 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09935
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 2470406 .. 2471383 (+)
RNA-Seq ExpressionCarg09935
SyntenyCarg09935
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCAGAGCCAAATTCGCTCCTCTCTCTCTCGAAGCGTTCTTCGTTCATTAACTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAAGGTCAACGAAATCGGTAATCCAGAGCGAAATTCGCCGTCTACAATGACCTTCAATCGCCGGCGCCGTCGGTATATTTCTGAAACTTACAAAATCGTATGATGTAATTTTCCCCTTTCTTAAGCTGTTTTTGTGCGCGTTTGTTTGTTTGTTTGTTTGTTTCTTAATTTGCCTTTTCAGAAACGGTAACTTTTAGGTCAATTTCTCCCTGAATTTTTACTCGGAAATGTGAGGTTTCAATTCGATTTCGATTTAATGCCTAATCTTCTCCGTTGATAGCAGAAACTATCTTGAATCGATTCAAGCCTGTTTTTGTTTGTTTTATTCTATTATTTATTTTTTATTTGTTTTTTTTTACTGTGACCCCATGTGTAGGTTCGATGGCAGGCAAAAACAAGTTTGTGTGAGAAAGCTTTAAAGCCATATAATATGCCTTTCGATGATGATGATGATTAATATATAATTGAAGCAGTTGGTTTGGTTTCATCAAAGGCTATGGATCTGTACTTTTACTGTGCCCGTAGATAAACCAACAGTTTCTGATATTTTAGTGCAGCCATAGAATGGATGGAGGTTATAGGCTATAATGTTTTTCATCCATTTTCTTTTTGTGAGTTTCTGTAATGTCAGATCTGTGTAGTGGTGTGTGGTTGAGTTGAATTATTAAAGAGGAGAAGGATTATTCTGTGCAGCAGAGTAAATTTGAAACACCAAGTTAATTCCTATTGTAATGAATGCTCTATAGGTTTAAGGTATTAGGACCACTTATCAGAAGAAGCCTTTAATTGGCTCTTTTTTAGCTTCAAACTCCTTCAATGCACACCATACAAACCCCTTTTTTTCTCA

mRNA sequence

ATGGCTCTGTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCAGAGCCAAATTCGCTCCTCTCTCTCTCGAAGCGTTCTTCGTTCATTAACTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAAGGTCAACGAAATCGGTAATCCAGAGCGAAATTCGCCGTCTACAATGACCTTCAATCGCCGGCGCCGTCGGTATATTTCTGAAACTTACAAAATCGTTCGATGGCAGGCAAAAACAAGTTTGTGTGAGAAAGCTTTAAAGCCATATAATATGCCTTTCGATGATGATGATGATTAATATATAATTGAAGCAGTTGGTTTGGTTTCATCAAAGGCTATGGATCTGTACTTTTACTGTGCCCGTAGATAAACCAACAGTTTCTGATATTTTAGTGCAGCCATAGAATGGATGGAGGTTATAGGCTATAATGTTTTTCATCCATTTTCTTTTTGTGAGTTTCTGTAATGTCAGATCTGTGTAGTGGTGTGTGGTTGAGTTGAATTATTAAAGAGGAGAAGGATTATTCTGTGCAGCAGAGTAAATTTGAAACACCAAGTTAATTCCTATTGTAATGAATGCTCTATAGGTTTAAGGTATTAGGACCACTTATCAGAAGAAGCCTTTAATTGGCTCTTTTTTAGCTTCAAACTCCTTCAATGCACACCATACAAACCCCTTTTTTTCTCA

Coding sequence (CDS)

ATGGCTCTGTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCAGAGCCAAATTCGCTCCTCTCTCTCTCGAAGCGTTCTTCGTTCATTAACTTTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAAGGTCAACGAAATCGGTAATCCAGAGCGAAATTCGCCGTCTACAATGACCTTCAATCGCCGGCGCCGTCGGTATATTTCTGAAACTTACAAAATCGTTCGATGGCAGGCAAAAACAAGTTTGTGTGAGAAAGCTTTAAAGCCATATAATATGCCTTTCGATGATGATGATGATTAA

Protein sequence

MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTMTFNRRRRRYISETYKIVRWQAKTSLCEKALKPYNMPFDDDDD
Homology
[Close]
BLAST of Carg09935 vs. NCBI nr
Match: KAG7023501.1 (hypothetical protein SDJN02_14527, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 2.7e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTM 60
           MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTM
Sbjct: 1   MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTM 60

Query: 61  TFNRRRRRYISETYKIVRWQAKTSLCEKALKPYNMPFDDDDD 103
           TFNRRRRRYISETYKIVRWQAKTSLCEKALKPYNMPFDDDDD
Sbjct: 61  TFNRRRRRYISETYKIVRWQAKTSLCEKALKPYNMPFDDDDD 102

[Close]
BLAST of Carg09935 vs. NCBI nr
Match: KAG6589831.1 (hypothetical protein SDJN03_15254, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-29
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTM 60
          MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTM
Sbjct: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSFINFCGSIKLWEDTDKVNEIGNPERNSPSTM 60

Query: 61 TFNRRRRRY 70
          TFN RRRR+
Sbjct: 61 TFNCRRRRF 69

[Close]
BLAST of Carg09935 vs. NCBI nr
Match: ACU17075.1 (unknown [Glycine max])

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. NCBI nr
Match: KAG4970747.1 (hypothetical protein JHK85_037168 [Glycine max] >RZB81299.1 hypothetical protein D0Y65_030855 [Glycine soja] >KAG4977151.1 hypothetical protein JHK86_036625 [Glycine max] >KAG5113172.1 hypothetical protein JHK82_036441 [Glycine max] >KAG5130451.1 hypothetical protein JHK84_036848 [Glycine max])

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. ExPASy TrEMBL
Match: K7M032 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G159700 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. ExPASy TrEMBL
Match: A0A445I5M6 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030855 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. ExPASy TrEMBL
Match: C6T5P3 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHLPEPNSLLSLSKRSSF--INFCGSIKLWEDTDKVN 48
          MALFVFFHSFLELH   P S  +     S+  I FCGSIKLWEDTD+VN
Sbjct: 1  MALFVFFHSFLELH---PKSSFACMPWHSYSQILFCGSIKLWEDTDRVN 46

[Close]
BLAST of Carg09935 vs. ExPASy TrEMBL
Match: A0A5J5VA11 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G060500v1 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.7e-04
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 1  MALFVFFHSFLELHL---PEPNSLLSLSKR--SSFINFCGSIKLWEDTDKVNE 49
          MALFVFFHSFLEL L   P    L  L +R  S ++  CGSIKLWEDTD+V E
Sbjct: 1  MALFVFFHSFLELQLRLTPFLVILCCLYRRYVSMYVCRCGSIKLWEDTDRVKE 53

The following BLAST results are available for this feature:
BLAST of Carg09935 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023501.12.7e-51100.00hypothetical protein SDJN02_14527, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6589831.14.9e-2997.10hypothetical protein SDJN03_15254, partial [Cucurbita argyrosperma subsp. sorori... [more]
ACU17075.16.5e-0565.31unknown [Glycine max][more]
KAG4970747.16.5e-0565.31hypothetical protein JHK85_037168 [Glycine max] >RZB81299.1 hypothetical protein... [more]
BLAST of Carg09935 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09935 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K7M0323.1e-0565.31Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G159700 PE=4 SV=1[more]
A0A445I5M63.1e-0565.31Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_030855 PE=4 SV=1[more]
C6T5P33.1e-0565.31Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1[more]
A0A5J5VA117.7e-0460.38Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G060500v1 PE... [more]
BLAST of Carg09935 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09935-RACarg09935-RAmRNA