Carg09933 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09933
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	Carg_Chr10: 2477318 .. 2480965 (-)
RNA-Seq Expression	Carg09933
Synteny	Carg09933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAATCGCTTCCCGCTTTCACAGCTAAACCAACGAACAAACCAGAATGTCCCTTCGCAATTTTTCGAAACCCTAGACCTCACTGAAAATTGCATTTGGATTTCCACGCTCTGATCTTCAAAAATCAATACCTTCTTCGATTCGTAACTCCAATTCTCCATTATTCGTCTTTCTAGTGTCTGAAATTTTGAGTTCAGGTCGATTCATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGGTAATTTTTCCACTTTTTGTATTGGTTCATATATAACTCTGTTGCAAATTTTGTTGTGTTAGACGAACGTTTTTGTGAGCGATCTGATACGAGTATAGTCGGGAATGTTTTGATGTTGATGTGAGAATGCTATTAAAAAACGTTTGAATGTTCTGCCTTTGGACTGGATATATTGAATTGATTTGATTACCATTGGTAGCGTAGAAAGTCAGGACCTATGGTCCTAGGTGCGAGTTGCAAGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGTAAGCTGTCGGGGGATTTGGAGTACTGAACCGCGCATATTAATCTAATATGTTGAATTGAAAATGAAAGTGTGTTCAATTGTTTATTTGGTTCAATTGCAGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGGTATTTCCTGAACTTTGTTTAGGCTATAAGCATTACAAGCTCATCCAAAAATTTCTTGTTATCCGCCCATTTTTTAGAGTTGTTTTCAAGATCCAACCAAATTTTGAAAACTTGAAAAGATAGTTCAGCTATTAAATAATTCCTTAAACTTATTTTCTGTCGGTTGTTTGTGACATTGAGTTTGGTATTGTATTTGATCGAGTAATTAACTAGTTATATATTCCCCCATGAAGCTGCATTTTGTGAACCGTGTAGCTTAATTTGTGGCAAGAATCTGTGGATTTGAGATGTCCCATCAAAGAATATATAGATAGAGCAAGGTAAGCGGGTTGAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGCGTGTGAATTATTATAAAGTGGTCAGATGGATCTTTTTCTGATGTTAAATTGGAAGTTTTGGTATAATATAAACAGTATGAATTTCATTTCATTTCTGCCACTCAAGACTGTACTTTTGTTTCTTTCAATTCAGAAATATAGTCCTTTACAAGATCGGTCTCTAAGGTACAGGAAGAATGGCAATGAAAATGCCCAAGTGATCTGAAATTGATACATTTTCTAAATCTGAAATAATGAATATCATTGCCTACCTATATGTATCGGAATGAACATCAATTACCACCAACTTCTACTTTCATCTTGGGGGTAAGCCTTCGATTACATGGTTTCTAGTATTTATGAATCTTTGAAATAATGATTGATGAAACGATTAAAGTCAGATATGATTTTTGTATAAATTTATTGTGATGAGACATATTAAAGAAATAAACATGATTAGAATCTTCATATAGTGTTCATATTCTCCATTGCTGATTGAAAGGAATGGTGATAACTTGCTAAGGTTAATATTTCCCATAGATGTTTAAGAAAGATACTGCAAATATGACACCCTAGGCACTGGAAGGTCTTGTCTACCTAAAGTTACAAGTCACTTACAAGGTAAGGCAGACCCACAAAGGAAGATCTAATTGTGTAGTAAAGCTAATATTTCGCATTTCCTCTCCTAATCAACCTCTGAAATGCTAAACATGAACATTTCTGATCACTGTTTACCTTTTATTATCAGAGAGGATTTGGAGATTGATCACCTTACATGCTGCTTTCCGATGTTCAATGGAGAAGCTCTGAAGTTTTGGGAGTAGGTTAGGCCTTCAGGTTTCTTCTTGTACCTCCCTTGTGAAGAAGATAAGCGGCAGTGAGATGTTAGGATGGCAAAGTCGTTGAGATCTTGCAACGGAGTCAGGGTCTTCACAACTTCGTCCATGGTCGGACGTAGTTTCGGGTCCCTGCTCAGGCAACTGCAAGCAAGCTGGGAGACCTTCTGCACCCCTTTAATGGAATACTTGAATTCCAAGCGGGGATCCACTATATGATATAGCTTTCTTTTATCACCTAAATATGGCCGAGCCCATGACACAAGGTTTTGCTCCCCACTCGGACGTTTCTTGTCCATGGATCTTCTCCCTGTTACAATCTCAAGAAGCACAACACCAAAGCTATAAACATCGTTCTTCGACGTCAGATGTCCTGTGATCAAATCAAGAAAAGTTGGAAGTTATGTCAGATATCAGTCATTACTTAAGATTCAATTCTCGGTTTCAACTAAAATTCCTCCACGAAGGCTCGCACAAACAATTTAGTATCGAGGGGTGTCATGTAGTTAAAACATCTTCTACGGATATCAACCTGTCATTACATATTCAGGAGCAGCATAGCCATACGTCCCAATTACCCTGGTAGAAACATGTGTTTTGTCTCCTTGAGGCCCTGCTTTCGCAAAGCCAAAATCTGAAAGCTTTGCATTGTATTCCTGTAAACAAATGTCATATGTATAATGAGATAAAGAAATTACTCGAAACATTTGGAGCATTGTCATTTGGAACCGATGGAACCGATGGAACCGACCGAATCAAGCAAGATATTGGATGTCTTAAAATCTCTATAGATAACAGGTACTGGGGCATTATGAAGAAAGGCCAATCCTTTTGCCGCTTTGAGGGCAATCTTAATCCTATTGGACCATGGAAGAGGAATAATCCCTGCACCAATCATGAATATAAGCATCTGTACCCCAACACCTTGTCTGTAACTAAGAGATAGAGATTCTTACTTCTGAAAAGATGGTTTTCCAGACTTCCACGGCTCATGAACTCATAAACAAGCAAATGTTGATCATCTTCGTTACAGTAACCTATAAGCTTCACAAGATTTGGATGGTGAAGTTGTCCAAGAAAGACAACCTCAGCCTGTAACCAAGAACATATTTTACGTTAGCACTCCCCAACAGGTCCCCTTTATAAGGTAAGTAAGCCTTCACGAACCCAAAGCAGAAAGTTCTACTAACCACCCATTCTCTATGGCCTTGAAGACCATCAAGTTTCAAGCTCTTAACAGCTACTGTAATTCCTGATCCGGGTTTTGCAGGGGCTGTCCCATTCTCTTCAATCCATCCTTTAAAGACAAATCCAAATCCACCTTCCCCAAGAATGCTATCAGGTCTAAAGTTTCCTGTTGCTGCCTTCAGCTCATGAAAAGAGAACTGAAGTAGTTTGCTTGTTGATTTGTTGTCTGATGGTGATGGATTGGCATTATCAGAGGCTAGCTCAGCTTCATTCGAGGTAGAGAGTTCTCTGTTGCTAGCATTTAAACACCGTGTTTCAGTAGCTGCAATCACAAAAGGTCAGTATCTTCTTAAGAACAATAAGCCTTCTTTTCACAGCCTACAAGCCATAGATGAACATGAGAAGACAACCAAA

mRNA sequence

AAATAATCGCTTCCCGCTTTCACAGCTAAACCAACGAACAAACCAGAATGTCCCTTCGCAATTTTTCGAAACCCTAGACCTCACTGAAAATTGCATTTGGATTTCCACGCTCTGATCTTCAAAAATCAATACCTTCTTCGATTCGTAACTCCAATTCTCCATTATTCGTCTTTCTAGTGTCTGAAATTTTGAGTTCAGGTCGATTCATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAGAGGATTTGGAGATTGATCACCTTACATGCTGCTTTCCGATGTTCAATGGAGAAGCTCTGAAGTTTTGGGAGTAGGTTAGGCCTTCAGGTTTCTTCTTGTACCTCCCTTGTGAAGAAGATAAGCGGCAGTGAGATGTTAGGATGGCAAAGTCGTTGAGATCTTGCAACGGAGTCAGGGTCTTCACAACTTCGTCCATGGTCGGACGTAGTTTCGGGTCCCTGCTCAGGCAACTGCAAGCAAGCTGGGAGACCTTCTGCACCCCTTTAATGGAATACTTGAATTCCAAGCGGGGATCCACTATATGATATAGCTTTCTTTTATCACCTAAATATGGCCGAGCCCATGACACAAGGTTTTGCTCCCCACTCGGACGTTTCTTGTCCATGGATCTTCTCCCTGTTACAATCTCAAGAAGCACAACACCAAAGCTATAAACATCGTTCTTCGACGTCAGATGTCCTGTGATCAAATCAAGAAAAGTTGGAAGTTATGTCAGATATCAGTCATTACTTAAGATTCAATTCTCGGTTTCAACTAAAATTCCTCCACGAAGGCTCGCACAAACAATTTAGTATCGAGGGGTGTCATGTAGTTAAAACATCTTCTACGGATATCAACCTGTCATTACATATTCAGGAGCAGCATAGCCATACGTCCCAATTACCCTGGTAGAAACATGTGTTTTGTCTCCTTGAGGCCCTGCTTTCGCAAAGCCAAAATCTGAAAGCTTTGCATTGTATTCCTGTAAACAAATGTCATATGTATAATGAGATAAAGAAATTACTCGAAACATTTGGAGCATTGTCATTTGGAACCGATGGAACCGATGGAACCGACCGAATCAAGCAAGATATTGGATGTCTTAAAATCTCTATAGATAACAGGTACTGGGGCATTATGAAGAAAGGCCAATCCTTTTGCCGCTTTGAGGGCAATCTTAATCCTATTGGACCATGGAAGAGGAATAATCCCTGCACCAATCATGAATATAAGCATCTGTACCCCAACACCTTGTCTGTAACTAAGAGATAGAGATTCTTACTTCTGAAAAGATGGTTTTCCAGACTTCCACGGCTCATGAACTCATAAACAAGCAAATGTTGATCATCTTCGTTACAGTAACCTATAAGCTTCACAAGATTTGGATGGTGAAGTTGTCCAAGAAAGACAACCTCAGCCTCCCATTCTCTATGGCCTTGAAGACCATCAAGTTTCAAGCTCTTAACAGCTACTGTAATTCCTGATCCGGGTTTTGCAGGGGCTGTCCCATTCTCTTCAATCCATCCTTTAAAGACAAATCCAAATCCACCTTCCCCAAGAATGCTATCAGGTCTAAAGTTTCCTGTTGCTGCCTTCAGCTCATGAAAAGAGAACTGAAGTAGTTTGCTTGTTGATTTGTTGTCTGATGGTGATGGATTGGCATTATCAGAGGCTAGCTCAGCTTCATTCGAGGTAGAGAGTTCTCTGTTGCTAGCATTTAAACACCGTGTTTCAGTAGCTGCAATCACAAAAGGTCAGTATCTTCTTAAGAACAATAAGCCTTCTTTTCACAGCCTACAAGCCATAGATGAACATGAGAAGACAACCAAA

Coding sequence (CDS)

ATGTCTCGTATTGAGCCCTATGTTTCGGATTCTTGCTCGGAGCAACAGTTTTCGCTACAAGAGGCTACCGCCGCAGCTTCTCCTCCTCCTCCTCTCCGTGCTAAAATTGGACGGCTCTTCTTTCGGACGGCGACGGTGGCAGCAGTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGAAGATGACAAGATTTCTTGGCCACATGTGCGGTGTCATTTTTGCTTATGCTATAAGCATTACAAGCTGATCGACGACAAATCACGTATCAAACAGTTTGAAATCATAGATGTTGATAAGAGAGGATTTGGAGATTGA

Protein sequence

MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGFGD

Homology

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: KAG7023503.1 (hypothetical protein SDJN02_14529 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGM 60
           MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGM
Sbjct: 1   MSRIEPYVSDSCSEQQFSLQEATAAASPPPPLRAKIGRLFFRTATVAAVRDAVESVFCGM 60

Query: 61  SMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGFGD 110
           SMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGFGD
Sbjct: 61  SMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGFGD 109

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: KAG6589833.1 (hypothetical protein SDJN03_15256, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 6.9e-29
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 42  RTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 101
           +TATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID
Sbjct: 16  KTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIID 75

Query: 102 VDKR 106
           VDK+
Sbjct: 76  VDKK 79

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_038880358.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 4.6e-25
Identity = 70/119 (58.82%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-----EQQFSLQEATAAASPPPPLRAKIGRL--------FFRTATVA 60
           MSRIEP V DSC            +       PP  +R  + +L          RTATVA
Sbjct: 1   MSRIEPMVPDSCCISPRFRSNSFRRSFRYKKLPPQLIRLSVLKLDGSSFEVQIARTATVA 60

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRG 107
           AVRDAVESVFCGMSMNKEDDKISWPHV  HFCLCYKH+KLIDDKSRIK F I D D+ G
Sbjct: 61  AVRDAVESVFCGMSMNKEDDKISWPHVWGHFCLCYKHFKLIDDKSRIKHFGIRDGDQIG 119

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_008443964.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo] >KAA0050134.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa] >TYK06388.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-21
Identity = 66/120 (55.00%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Carg09933 vs. NCBI nr
Match: XP_011655436.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN65130.1 hypothetical protein Csa_023500 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.0e-21
Identity = 66/120 (55.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVA 60
           MS IEP V DSC    +F       +      PP  LR  + +L          RTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

[Close]

BLAST of Carg09933 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 66/120 (55.00%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Carg09933 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 66/120 (55.00%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

[Close]

BLAST of Carg09933 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 66/120 (55.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVA 60
           MS IEP V DSC    +F       +      PP  LR  + +L          RTATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+  F
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

[Close]

BLAST of Carg09933 vs. ExPASy TrEMBL
Match: A0A1S3B9C0 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 65/117 (55.56%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-EQQFSLQEATAAAS----PPPPLRAKIGRL--------FFRTATVA 60
           MS+IEP V DSC    +F       +      PP  LR  + +L          RTATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVDK 105
           AVRDAVESVFC MSMNKED  ISWPHV  HFCLCYKH+KL+DDKSRI+ F I D D+
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQ 120

[Close]

BLAST of Carg09933 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.1e-19
Identity = 59/116 (50.86%), Postives = 69/116 (59.48%), Query Frame = 0


Query: 1   MSRIEPYVSDSCS-----EQQFSLQEATAAASPPPPLRAKIGRL--------FFRTATVA 60
           M RIEP + DSC            +       P   L   + +L          R A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  AVRDAVESVFCGMSMNKEDDKISWPHVRCHFCLCYKHYKLIDDKSRIKQFEIIDVD 104
            +R+AVESVFCGMSMN+ED KISWPHV  HFCLCYKHYKLID+KSRIK+F I D D
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGD 116

[Close]

BLAST of Carg09933 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 29  PPPLRAKI------GRLF----FRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHF 88
           PP  R K+      G LF     +  +VA ++ AVE VF  +S  +    ISW HV  HF
Sbjct: 48  PPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFT-ISPLEGHGMISWSHVWGHF 107

Query: 89  CLCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           CLCY+  +L++DK+ I+   + D D+  F
Sbjct: 108 CLCYRDQRLVNDKTSIRYLGLNDGDQLHF 135

[Close]

BLAST of Carg09933 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 30/88 (34.09%), Postives = 43/88 (48.86%), Query Frame = 0


Query: 28  PPPPLRAKIGRL--------FFRTATVAAVRDAVESVFCGMSMNKEDDKISWPHVRCHFC 87
           P  P+R  + +L           +ATV  ++ A+E+ F  +   K   KISW HV  HFC
Sbjct: 15  PNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVP-KKGPSKISWSHVWGHFC 74

Query: 88  LCYKHYKLIDDKSRIKQFEIIDVDKRGF 108
           LC+   KLI D   I  + + D D+  F
Sbjct: 75  LCFGGQKLITDTDCIGNYGMKDGDEVRF 101

The following BLAST results are available for this feature:

BLAST of Carg09933 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023503.1	3.0e-56	100.00	hypothetical protein SDJN02_14529 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589833.1	6.9e-29	96.88	hypothetical protein SDJN03_15256, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038880358.1	4.6e-25	58.82	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Benincasa hispida]	[more]
XP_008443964.1	2.4e-21	55.00	PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X...	[more]
XP_011655436.1	4.0e-21	55.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucumis sativus] >KGN651...	[more]

BLAST of Carg09933 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09933 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4H4	1.1e-21	55.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	1.1e-21	55.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A0A0LT94	2.0e-21	55.00	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A1S3B9C0	2.0e-21	55.56	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 OS=Cucumi...	[more]
A0A6J1EHC7	4.1e-19	50.86	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]

BLAST of Carg09933 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	6.0e-07	37.08	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	1.1e-05	34.09	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 40..108 e-value: 3.5E-13 score: 51.2
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 42..104
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 42..103 e-value: 8.5E-11 score: 41.8
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 42..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09933-RA	Carg09933-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex