Carg09503 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09503
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear pore complex protein NUP35
Location	Carg_Chr17: 6565294 .. 6568274 (+)
RNA-Seq Expression	Carg09503
Synteny	Carg09503

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCGCACCGCCAAACCGTATTGCCCACTGGACGAAGTCTGAGGATTAGGGTTTCAAACTTTCTTACGTCTTTTCGTTCGATTTGGGCGTTTCATTCTAAAATATTTTCGGGAGGGAAAAATCCCGAATTGAAAATCAAGTACCCAAGGCCCCTCGCATCTCAAATTCTCCAATCCAATCGATCAGTTAGAAGCAGAGCTCGAGTAGTTTCTGAAGGTGATTATCCTAATCTCTCATCCATTTTCTCATTGCGTTTTCCCTTCTGAACTTCGTAGACTGGAATTGCACTATTGTGTTATTTGTATTTTTGAGAGAATCACGATGGATGAATGGAATGATATTTTGTGAATTTGAAGTTCTACTTGTTTGATTTCTGAGAATTTTCGGAAGCTCAAGCTTGGTTGAGATTGATATTTCCCGCGTTTTCCCAGCGGATGAACGTAGATCGAGGCTGTAAATTTTTCGAAATGGCTAATCTGGGGTTTTCTTTTTGGAGCTTTATTCTTATGAGCTTTCTCAGAATCGTTTCTATATTTATTTTGAAGTTCTAGACTGCTTCTTCAAAATCGTGTTAGTGGAGTTCGTTATGGAACCTAGGTTCCCCACTGCATCTGCTAGTTCTTTAATTGAATTTACTCGTCTTTGACCTTGGAGATTTTATTACACCATGTGATGGTCAACTCTGTACAGAGATTGCTTAGCGGTTTAGTTTGAATTTAACGTTCATTTCTCAAATCTATTTTGTTCGAGGTAAAACTGATTATATGTTCGTATGCAGTTGAGATATCTCTCTCTTCTAAGTCATGAACACCACTGTGCATAGAACTTCCAATTCTGGGAGGCAGTCGTTGTTCTACCAAGATTTAGCATCTCCTGTTTCGACGCGCAGAGGGAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTACCCCCTCCTCCGGTTTTTACATTGGAAGACCGTTCGGGCTCTGATTTTTCTCCTGAATCTGGGATTCCTGATTATCCTGTTTCACCAGAAGTTAAATCAGACCCGATGACCCCTATCCAAAGTCATGACTTCTCTTCGCCGATGAAAAGCAAGTCAAATACCAGCACTTCACACACACCAATTAGTGCCCAACAAAGCCGGCAGGCATCAGCTGGCTTTAGTTGGTGGTCAACACCAAAAGGTGGTGGCAGCGAGCAGGAAGATAAGGGGAAAAGTTCACCAGTTGAAGGTGTGATTCAACCAGGTGCATTAATCACACTTCAAACCCCAAGGGAAGTTGCCAGACCGGAGGTGCAGAGGAATTGCTTGCCTGCAGGAAAACTCAACGAGGAGGAATGGGTTACTGTCTATGGGTGAGTTCTCTATTCCCTTTCCCCCTTTCATTCATCATTGTTAGCTGAGATCTTTGTAGTGAGTTGGATTTCAATGATTCATTTACCGGATTTTTTTATCTGCAAGCCAAACAGTCGTCCATTTTTCTTTCGGGCCATCTTGGAGTTTTCTAACTAACGATGCAGATGATCAAATTGGTTTTAGTTTTATTTGATTCATCTGTCTTGCCCTGCCATTTCTCTTGGATGCATCTCTCTCTCTCTCTTACACACACCCACACTTAACTCCTGCACGTAAGAACATGTTAATGTTTTGAACATTGCTTCAATTAATAACCACTTTAACATTAAACGTATTCAATTGGGAAGTGTTGTAAGCCTGTCCTTTTACATTGGCTTATTTTTTGTTGAAATGAATGAGTATGCTTCAATATATTGACAGGTAAGGTAGTACCCTAGTTGTTTTAGATTTACCTCAGTTGCAATGCTGCTGTAAGCAATGGCAGTTATGCTGATTTTGAAATAAGCAAGTTAGATTGTTAAGATTTAGTATTTGATATGAGGCAATGCATCAATTGATTTCAAGTCTTATTTGTATAATTTTGTGCCCTCTTTCTTCAGATTCTCACCTGCTGATACGAATCTAGTTTTGAGGGAATTTGAAAAGTGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAACTGGATGCACATTCTTTATAAGGTACCAACCTACCTCTGTTTCTCTGCTTTATTTGACTATGGTTTTCTCAGTTTGATGTTTTTTATTTTTCCTTTTAGACTCTTCCAGTTAATTTGGGAATAAACATGCAAAATGTATTCTGCTGGTAAAGATTATTATCAGGTTTTAAGATTCTCAATATTTTTAGTTTAACAATATGGGGATGAGGATACGAAACTCGTAGATTAAGATGCCTTAACTAGTTGAGCGCTCAAGTTGGCTAATTAGGTTTAAAATTTAATTGGCACTTGCAGAGTGTTTTGGCACTTGATGTATGTTATATCAAGCATATATGATTGAAATGATATCCATATATGAACAGGAAGATGCTATATTCAACCTCTTAGAAAAACTATTTGCCTTACGAATTTGTTGCTGGTGCAGAACCGATCTGGTGCCCACAAGGCTCTCAGCAAGAATGGTATTCAAATCAATGGGATGCTAATTGTTGGCGTGAAACCTGTGGATCCAATAGACCGGCAGACACTAGATGAAAAGTTAAACAACCCAGGATTCATGGTTCTCCCACCGGTATCTTCTCGAACCGCAGAACTCGCAACGAGAGGAGGGCCTGTGCGACCCTACAACTTCCAAAATGGTAACAGTTATGCACGGCAGTCAGGAGGTACCACCATTGCTTCACCATCCAAATCATTAGTGTCTAAGGTCATGGATTTGATGTTTGGAGTCTAAGTTAGGTAGCTCCTTCTCCTGTGGGCGTATAGATTTTCCATGGCAAGAAATTCCTACAAATTTGAGAGCTTACACACATTGACTTGGCGTGATATATGTTAGCCTGTTTCATTCTATGTTTTTCCTGTTTAATTTTTATTTTTAAGAATGATTCAAACATATTAATGGAATCTGATAAG

mRNA sequence

AAATCGCACCGCCAAACCGTATTGCCCACTGGACGAAGTCTGAGGATTAGGGTTTCAAACTTTCTTACGTCTTTTCGTTCGATTTGGGCGTTTCATTCTAAAATATTTTCGGGAGGGAAAAATCCCGAATTGAAAATCAAGTACCCAAGGCCCCTCGCATCTCAAATTCTCCAATCCAATCGATCAGTTAGAAGCAGAGCTCGAGTAGTTTCTGAAGTTGAGATATCTCTCTCTTCTAAGTCATGAACACCACTGTGCATAGAACTTCCAATTCTGGGAGGCAGTCGTTGTTCTACCAAGATTTAGCATCTCCTGTTTCGACGCGCAGAGGGAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTACCCCCTCCTCCGGTTTTTACATTGGAAGACCGTTCGGGCTCTGATTTTTCTCCTGAATCTGGGATTCCTGATTATCCTGTTTCACCAGAAGTTAAATCAGACCCGATGACCCCTATCCAAAGTCATGACTTCTCTTCGCCGATGAAAAGCAAGTCAAATACCAGCACTTCACACACACCAATTAGTGCCCAACAAAGCCGGCAGGCATCAGCTGGCTTTAGTTGGTGGTCAACACCAAAAGGTGGTGGCAGCGAGCAGGAAGATAAGGGGAAAAGTTCACCAGTTGAAGGTGTGATTCAACCAGGTGCATTAATCACACTTCAAACCCCAAGGGAAGTTGCCAGACCGGAGGTGCAGAGGAATTGCTTGCCTGCAGGAAAACTCAACGAGGAGGAATGGGTTACTGTCTATGGATTCTCACCTGCTGATACGAATCTAGTTTTGAGGGAATTTGAAAAGTGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAACTGGATGCACATTCTTTATAAGAACCGATCTGGTGCCCACAAGGCTCTCAGCAAGAATGGTATTCAAATCAATGGGATGCTAATTGTTGGCGTGAAACCTGTGGATCCAATAGACCGGCAGACACTAGATGAAAAGTTAAACAACCCAGGATTCATGGTTCTCCCACCGGTATCTTCTCGAACCGCAGAACTCGCAACGAGAGGAGGGCCTGTGCGACCCTACAACTTCCAAAATGGTAACAGTTATGCACGGCAGTCAGGAGGTACCACCATTGCTTCACCATCCAAATCATTAGTGTCTAAGGTCATGGATTTGATGTTTGGAGTCTAAGTTAGGTAGCTCCTTCTCCTGTGGGCGTATAGATTTTCCATGGCAAGAAATTCCTACAAATTTGAGAGCTTACACACATTGACTTGGCGTGATATATGTTAGCCTGTTTCATTCTATGTTTTTCCTGTTTAATTTTTATTTTTAAGAATGATTCAAACATATTAATGGAATCTGATAAG

Coding sequence (CDS)

ATGAACACCACTGTGCATAGAACTTCCAATTCTGGGAGGCAGTCGTTGTTCTACCAAGATTTAGCATCTCCTGTTTCGACGCGCAGAGGGAAATTTTCAACTCCAGGCCAGGCAGCTGCTGTTTCTGCTTTATGGCGGGAGAATTTTGGAAACTCAGATCTACCCCCTCCTCCGGTTTTTACATTGGAAGACCGTTCGGGCTCTGATTTTTCTCCTGAATCTGGGATTCCTGATTATCCTGTTTCACCAGAAGTTAAATCAGACCCGATGACCCCTATCCAAAGTCATGACTTCTCTTCGCCGATGAAAAGCAAGTCAAATACCAGCACTTCACACACACCAATTAGTGCCCAACAAAGCCGGCAGGCATCAGCTGGCTTTAGTTGGTGGTCAACACCAAAAGGTGGTGGCAGCGAGCAGGAAGATAAGGGGAAAAGTTCACCAGTTGAAGGTGTGATTCAACCAGGTGCATTAATCACACTTCAAACCCCAAGGGAAGTTGCCAGACCGGAGGTGCAGAGGAATTGCTTGCCTGCAGGAAAACTCAACGAGGAGGAATGGGTTACTGTCTATGGATTCTCACCTGCTGATACGAATCTAGTTTTGAGGGAATTTGAAAAGTGCGGTGAGATCTTGAAACACGTTCCTGGTCCAAGAGATGCTAACTGGATGCACATTCTTTATAAGAACCGATCTGGTGCCCACAAGGCTCTCAGCAAGAATGGTATTCAAATCAATGGGATGCTAATTGTTGGCGTGAAACCTGTGGATCCAATAGACCGGCAGACACTAGATGAAAAGTTAAACAACCCAGGATTCATGGTTCTCCCACCGGTATCTTCTCGAACCGCAGAACTCGCAACGAGAGGAGGGCCTGTGCGACCCTACAACTTCCAAAATGGTAACAGTTATGCACGGCAGTCAGGAGGTACCACCATTGCTTCACCATCCAAATCATTAGTGTCTAAGGTCATGGATTTGATGTTTGGAGTCTAA

Protein sequence

MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQSRQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAGKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSKNGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQNGNSYARQSGGTTIASPSKSLVSKVMDLMFGV

Homology

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BLAST of Carg09503 vs. NCBI nr
Match: XP_022954270.1 (nuclear pore complex protein NUP35 [Cucurbita moschata] >KAG6575518.1 Nuclear pore complex protein NUP35, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014057.1 Nuclear pore complex protein NUP35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 667.5 bits (1721), Expect = 5.8e-188
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNSYARQSGGTTIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 331

[Close]

BLAST of Carg09503 vs. NCBI nr
Match: XP_022992333.1 (nuclear pore complex protein NUP35 [Cucurbita maxima])

HSP 1 Score: 665.6 bits (1716), Expect = 2.2e-187
Identity = 330/331 (99.70%), Postives = 330/331 (99.70%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSN STSHTPISAQQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNASTSHTPISAQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNSYARQSGGTTIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 331

[Close]

BLAST of Carg09503 vs. NCBI nr
Match: XP_023521774.1 (nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo] >XP_023521848.1 nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo] >XP_023547551.1 nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 664.1 bits (1712), Expect = 6.4e-187
Identity = 329/331 (99.40%), Postives = 329/331 (99.40%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSN STSHTPIS QQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNASTSHTPISGQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNSYARQSGGTTIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 331

[Close]

BLAST of Carg09503 vs. NCBI nr
Match: XP_038900103.1 (nuclear pore complex protein NUP35 [Benincasa hispida])

HSP 1 Score: 593.6 bits (1529), Expect = 1.1e-165
Identity = 296/331 (89.43%), Postives = 309/331 (93.35%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNT VHRT NSGRQSLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTIVHRTPNSGRQSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRSGSDFSPESGI DYPVSPE+KSDP TPIQSHDFSSP+K+KSN STS+TPIS QQS
Sbjct: 61  TLEDRSGSDFSPESGIADYPVSPEIKSDPRTPIQSHDFSSPLKNKSNASTSYTPISGQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQ SAGFSWWST KGGGSEQEDKGKSSPVEGVIQPGALITL TPREVARPEVQRNCLPA 
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPAA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILY+NRS AH+AL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHRALNK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQING+LIVGVKPVDP+ RQ LDEKLN+PGFMV PPVSSRT+EL    G VRPYN QN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNHPGFMVTPPVSSRTSELLATRGLVRPYNLQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNS ARQSGG TIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSSARQSGG-TIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Carg09503 vs. NCBI nr
Match: XP_022151212.1 (nuclear pore complex protein NUP35 [Momordica charantia])

HSP 1 Score: 582.4 bits (1500), Expect = 2.5e-162
Identity = 288/331 (87.01%), Postives = 305/331 (92.15%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTT+HRT NSGRQS+FYQDLASPV++R+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTLHRTPNSGRQSMFYQDLASPVTSRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDR  SDFSPESGIPDYP+SPE+KSDP TPIQSHDFSSPMK+KSN STS+TP S QQS
Sbjct: 61  TLEDR--SDFSPESGIPDYPLSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPTSGQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQ SAGFSWWST KGGGSEQEDKGKSSPVEG +QPGALI L TPREVARPEVQRNC PAG
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGXVQPGALIILPTPREVARPEVQRNCFPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILY+NRS AHKAL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NG+QING+LIVGVKPVDP+ RQ LDEK+NNPGFMV+PPV SRT EL    GPVR YN QN
Sbjct: 241 NGVQINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRTTELLATRGPVRTYNLQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNS ARQSGG TIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSNARQSGG-TIASPSKSLVSKVMDLMFGV 328

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BLAST of Carg09503 vs. ExPASy Swiss-Prot
Match: O04326 (Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 4.5e-119
Identity = 223/334 (66.77%), Postives = 257/334 (76.95%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRT  SGRQSL +QDLASPVS RRGKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQS--HDFSSPMKSKSNTSTSHTPISAQ 120
           TL+DR  SDFSPESGI DY  SP+ KSD  TP QS   +  +P K K   S S + ++AQ
Sbjct: 61  TLDDR--SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQASAGFSWWSTPKGGGS-EQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCL 180
           QS+Q S   SWWS  K G S EQ+DKGK SPVEGV+QPGAL+TL  PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PAGKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKA 240
           P G L+EEEWVTVYGFSP DTNLVLREFEKCG +LKHVPGPR+ANWMHILY+NRS AHKA
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LSKNGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYN 300
           L+K G+ ING++IVGVKPVDPI +Q L+E+LNN GFM LPP SS      T     RP  
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR---NTARPLSRPQY 300

Query: 301 FQNGNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
            QNG++++ Q  G  +ASPSKS+VSK  DLMFGV
Sbjct: 301 LQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

[Close]

BLAST of Carg09503 vs. ExPASy Swiss-Prot
Match: Q66IJ0 (Nucleoporin NUP35 OS=Xenopus tropicalis OX=8364 GN=nup35 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-16
Identity = 91/314 (28.98%), Postives = 143/314 (45.54%), Query Frame = 0


Query: 34  TPGQAAAVSAL-WRENFGNSDLPPPPVF-TLEDRSGSDFSPESGIPDYPVSPEVKSDPMT 93
           TP Q  ++  +  R    +   PP PV  T +D+SG+   P   I D   SP + S P+ 
Sbjct: 44  TPQQRPSIGVMEMRSPLLSGGSPPQPVVPTHKDKSGA--PPVRSIYDDIASPGLGSTPLN 103

Query: 94  PIQSHDFS---SPMKSKSNTSTSHTPISAQQSRQASAGFSWWSTPKGGGSEQEDKGKSSP 153
           P ++  FS   +P+     +S     IS  + R AS+ FS    P   G  ++       
Sbjct: 104 PRKTASFSVLHTPLSGVIPSSPECKNISGSRKRPASSVFS----PATIGHSRK------- 163

Query: 154 VEGVIQPGALITLQTPREVARPEVQRNCLPAGKLNEEEWVTVYGFSPADTNLVLREFEKC 213
                      T  +P ++     Q + L +    ++ WVTV+GF  A  + +L +F + 
Sbjct: 164 -----------TTLSPAQMDPFYTQGDALTSDDQLDDTWVTVFGFPQASASYILLQFAQY 223

Query: 214 GEILKHVPGPRDANWMHILYKNRSGAHKALSKNGIQINGMLIVGVKPVDPIDRQTLD--E 273
           G I+KHV    + NWMHI Y+++  A KALSK+G      +++GVKP   ID+  ++  E
Sbjct: 224 GNIIKHVMS-NNGNWMHIQYQSKLQARKALSKDGRIFGESIMIGVKPC--IDKSVMEATE 283

Query: 274 KLNNP--GFMVLPPV---SSRTAELAT-RGGPVRP----YNFQNGNSYARQSGGTTIASP 331
           K++ P    +  PPV    + T  + T R   +RP    Y       Y +          
Sbjct: 284 KVSTPTVSSVFTPPVKNIGTPTQSVGTPRAASMRPLAATYKTPASADY-QVVADKQAPRK 329

[Close]

BLAST of Carg09503 vs. ExPASy Swiss-Prot
Match: Q8NFH5 (Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.7e-15
Identity = 101/339 (29.79%), Postives = 137/339 (40.41%), Query Frame = 0


Query: 21  LASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDF------SP-- 80
           L SP S + G          V+A +   F   DLP P        SG         SP  
Sbjct: 20  LGSPTSPKPG----------VNAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLL 79

Query: 81  ESGIPDYPVSPEVK-SDPMTPIQS--HDFSSP-MKSKSNTSTSHTPISAQQSRQASAGFS 140
             G P  PV P  K      P++S   D SSP + S   TS     IS  QS        
Sbjct: 80  AGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQPNISVMQSPLVGV--- 139

Query: 141 WWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAGKLNEEEWV 200
             STP  G S         P +  + P  L    T         Q + L +    ++ WV
Sbjct: 140 -TSTPGTGQSMFSPASIGQPRKTTLSPAQLDPFYT---------QGDSLTSEDHLDDSWV 199

Query: 201 TVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSKNGIQINGM 260
           TV+GF  A  + +L +F + G ILKHV      NWMHI Y+++  A KALSK+G      
Sbjct: 200 TVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGES 259

Query: 261 LIVGVKPVDPIDRQTLDEK----LNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN---- 320
           +++GVKP   ID+  ++      L++P     PP+        T G P +P +       
Sbjct: 260 IMIGVKPC--IDKSVMESSDRCALSSPSLAFTPPIK-------TLGTPTQPGSTPRISTM 319

Query: 321 ---GNSYARQSGGTTIAS----PSK--SLVSKVMDLMFG 331
                +Y   +    + S    P K  SLVSK M+ MFG
Sbjct: 320 RPLATAYKASTSDYQVISDRQTPKKDESLVSKAMEYMFG 325

[Close]

BLAST of Carg09503 vs. ExPASy Swiss-Prot
Match: Q68FY1 (Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-15
Identity = 88/323 (27.24%), Postives = 135/323 (41.80%), Query Frame = 0


Query: 20  DLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDFSPESGIPDY 79
           DL +PV+ +    S  G +  V  +          P P V   +D+SG+   P   I D 
Sbjct: 42  DLPAPVTPQPRSIS--GPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGA--PPVRSIYDD 101

Query: 80  PVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQSRQASAGFSWWSTPKGGGSE 139
             SP + S P+          P + ++N S   +P+               +TP  G S 
Sbjct: 102 ISSPGLGSTPL----------PSRRQANISVLQSPLVGV------------TTPVTGQSM 161

Query: 140 QEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAGKLNEEEWVTVYGFSPADTN 199
                   P +  + P  L    T         Q + L +    ++ WVTV+GF  A  +
Sbjct: 162 FSPANIGQPRKTTLSPAQLDPFYT---------QGDSLTSEDHLDDTWVTVFGFPQASAS 221

Query: 200 LVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSKNGIQINGMLIVGVKPVDPI 259
            +L +F + G ILKHV      NWMHI Y+++  A KALSK+G      +++GVKP   I
Sbjct: 222 YILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC--I 281

Query: 260 DRQTLDEK----LNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN--GNSYARQSGGTTI 319
           D+  ++      L++P     PP+  RT    T+ G     +       +Y   +    +
Sbjct: 282 DKNVMENSDRGVLSSPSLAFTPPI--RTLGTPTQPGSTPRVSTMRPLATAYKASTSDYQV 324

Query: 320 AS----PSK--SLVSKVMDLMFG 331
            S    P K  SLVS+ M+ MFG
Sbjct: 342 ISDRQTPKKDESLVSRAMEYMFG 324

[Close]

BLAST of Carg09503 vs. ExPASy Swiss-Prot
Match: Q8R4R6 (Nucleoporin NUP35 OS=Mus musculus OX=10090 GN=Nup35 PE=1 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 5.2e-14
Identity = 98/334 (29.34%), Postives = 136/334 (40.72%), Query Frame = 0


Query: 21  LASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVFTLEDRSGSDF------SP-- 80
           L SP S + G           +A +   F   DLP P        SG         SP  
Sbjct: 20  LGSPTSPKTG----------ANAQFLPGFLMGDLPAPVTPQPRSISGPSVGVMEMRSPLL 79

Query: 81  ESGIPDYPVSPEVK-SDPMTPIQS--HDFSSP-MKSKSNTSTSHTPISAQQSRQASAGFS 140
             G P  PV P  K      P++S   D SSP + S   TS     IS  QS    A   
Sbjct: 80  AGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPGLGSTPLTSRRQANISLLQSPLVGA--- 139

Query: 141 WWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAGKLNEEEWV 200
             +TP  G S         P +  + P  L    T         Q + L +    ++ WV
Sbjct: 140 --TTPVPGQSMFSPANIGQPRKTTLSPAQLDPFYT---------QGDSLTSEDHLDDTWV 199

Query: 201 TVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSKNGIQINGM 260
           TV+GF  A  + +L +F + G ILKHV      NWMHI Y+++  A KALSK+G      
Sbjct: 200 TVFGFPQASASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALSKDGRIFGES 259

Query: 261 LIVGVKPVDPIDRQTLDEK----LNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN--GN 320
           +++GVKP   ID+  ++      L++P      P+  RT    T+ G     +       
Sbjct: 260 IMIGVKPC--IDKNVMENSDRGVLSSPSLAFTTPI--RTLGTPTQSGSTPRVSTMRPLAT 319

Query: 321 SYARQSGGTTIAS----PSK--SLVSKVMDLMFG 331
           +Y   +    + S    P K  SLVS+ M+ MFG
Sbjct: 320 AYKASTSDYQVISDRQTPKKDESLVSRAMEYMFG 324

[Close]

BLAST of Carg09503 vs. ExPASy TrEMBL
Match: A0A6J1GRZ8 (Nuclear pore complex protein NUP35 OS=Cucurbita moschata OX=3662 GN=LOC111456575 PE=3 SV=1)

HSP 1 Score: 667.5 bits (1721), Expect = 2.8e-188
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNSYARQSGGTTIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 331

[Close]

BLAST of Carg09503 vs. ExPASy TrEMBL
Match: A0A6J1JYW9 (Nuclear pore complex protein NUP35 OS=Cucurbita maxima OX=3661 GN=LOC111488673 PE=3 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.1e-187
Identity = 330/331 (99.70%), Postives = 330/331 (99.70%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSN STSHTPISAQQS
Sbjct: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNASTSHTPISAQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG
Sbjct: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN
Sbjct: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNSYARQSGGTTIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 331

[Close]

BLAST of Carg09503 vs. ExPASy TrEMBL
Match: A0A6J1DCV4 (Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC111019186 PE=3 SV=1)

HSP 1 Score: 582.4 bits (1500), Expect = 1.2e-162
Identity = 288/331 (87.01%), Postives = 305/331 (92.15%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTT+HRT NSGRQS+FYQDLASPV++R+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTLHRTPNSGRQSMFYQDLASPVTSRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDR  SDFSPESGIPDYP+SPE+KSDP TPIQSHDFSSPMK+KSN STS+TP S QQS
Sbjct: 61  TLEDR--SDFSPESGIPDYPLSPEIKSDPRTPIQSHDFSSPMKNKSNASTSYTPTSGQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQ SAGFSWWST KGGGSEQEDKGKSSPVEG +QPGALI L TPREVARPEVQRNC PAG
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGXVQPGALIILPTPREVARPEVQRNCFPAG 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILY+NRS AHKAL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYQNRSDAHKALNK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NG+QING+LIVGVKPVDP+ RQ LDEK+NNPGFMV+PPV SRT EL    GPVR YN QN
Sbjct: 241 NGVQINGVLIVGVKPVDPMHRQALDEKINNPGFMVIPPVPSRTTELLATRGPVRTYNLQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GNS ARQSGG TIASPSKSLVSKVMDLMFGV
Sbjct: 301 GNSNARQSGG-TIASPSKSLVSKVMDLMFGV 328

[Close]

BLAST of Carg09503 vs. ExPASy TrEMBL
Match: A0A0A0K7B2 (Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE=3 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.1e-160
Identity = 286/331 (86.40%), Postives = 303/331 (91.54%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRT NSG +SLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDP TPI+ HDFSSP K+KSN STS+TPIS QQS
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPISGQQS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQ SAGFSWWST KGGGSEQEDKGKSSPVEGVIQPGALITL TPREVARPEVQRNCLP  
Sbjct: 121 RQGSAGFSWWSTSKGGGSEQEDKGKSSPVEGVIQPGALITLPTPREVARPEVQRNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILY+NRS A KAL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQING+LIVGVKPVDP+ RQ L+E+LNNPGFMV+PPVSSRT+EL    GP+RPYN QN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALEERLNNPGFMVIPPVSSRTSELLATRGPMRPYNLQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           G + AR SGG  IASPSKSLVSKVMDLMFGV
Sbjct: 301 GYTSARHSGG-AIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Carg09503 vs. ExPASy TrEMBL
Match: A0A5A7U592 (Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00200 PE=3 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 5.5e-160
Identity = 284/331 (85.80%), Postives = 303/331 (91.54%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           MNTTVHRT NSG +SLFYQDLASPV+TR+GKFSTPGQAAAVSALWRENFGNSDLPPPPVF
Sbjct: 1   MNTTVHRTPNSGSRSLFYQDLASPVTTRKGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQSHDFSSPMKSKSNTSTSHTPISAQQS 120
           TLEDRS SDFSPESGIPDYPVSPE KSDP TPI+ HDFSSP K+KSN STS+TPI+ Q S
Sbjct: 61  TLEDRSVSDFSPESGIPDYPVSPETKSDPRTPIRRHDFSSPTKNKSNASTSYTPINGQPS 120

Query: 121 RQASAGFSWWSTPKGGGSEQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCLPAG 180
           RQ SAGFSWWST KGGGSE+EDKGKSSPVEGVIQPGALITL TPREVARPEV+RNCLP  
Sbjct: 121 RQGSAGFSWWSTSKGGGSEREDKGKSSPVEGVIQPGALITLPTPREVARPEVERNCLPLA 180

Query: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKALSK 240
           KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKH+PGPRDANWMHILY+NRS A KAL+K
Sbjct: 181 KLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHLPGPRDANWMHILYQNRSDAQKALNK 240

Query: 241 NGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYNFQN 300
           NGIQING+LIVGVKPVDP+ RQ LDEKLNNPGFMV+PPVSSRT+EL    GP+RPY+ QN
Sbjct: 241 NGIQINGVLIVGVKPVDPMHRQALDEKLNNPGFMVIPPVSSRTSELLATRGPMRPYSLQN 300

Query: 301 GNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
           GN+ AR SGG  IASPSKSLVSKVMDLMFGV
Sbjct: 301 GNTSARHSGG-AIASPSKSLVSKVMDLMFGV 330

[Close]

BLAST of Carg09503 vs. TAIR 10
Match: AT3G16310.1 (mitotic phosphoprotein N' end (MPPN) family protein )

HSP 1 Score: 429.1 bits (1102), Expect = 3.2e-120
Identity = 223/334 (66.77%), Postives = 257/334 (76.95%), Query Frame = 0


Query: 1   MNTTVHRTSNSGRQSLFYQDLASPVSTRRGKFSTPGQAAAVSALWRENFGNSDLPPPPVF 60
           M+   HRT  SGRQSL +QDLASPVS RRGKFS+PGQAAAVSALWRENFG SDLPPPP++
Sbjct: 1   MSAAAHRTPKSGRQSLLFQDLASPVSARRGKFSSPGQAAAVSALWRENFGGSDLPPPPMY 60

Query: 61  TLEDRSGSDFSPESGIPDYPVSPEVKSDPMTPIQS--HDFSSPMKSKSNTSTSHTPISAQ 120
           TL+DR  SDFSPESGI DY  SP+ KSD  TP QS   +  +P K K   S S + ++AQ
Sbjct: 61  TLDDR--SDFSPESGIADYSASPDAKSDRRTPFQSSGKNIVTPGKGKLEASPSFSLLNAQ 120

Query: 121 QSRQASAGFSWWSTPKGGGS-EQEDKGKSSPVEGVIQPGALITLQTPREVARPEVQRNCL 180
           QS+Q S   SWWS  K G S EQ+DKGK SPVEGV+QPGAL+TL  PREVARPEVQR  +
Sbjct: 121 QSQQVSGSPSWWSQSKAGSSTEQDDKGKGSPVEGVVQPGALVTLPPPREVARPEVQRQII 180

Query: 181 PAGKLNEEEWVTVYGFSPADTNLVLREFEKCGEILKHVPGPRDANWMHILYKNRSGAHKA 240
           P G L+EEEWVTVYGFSP DTNLVLREFEKCG +LKHVPGPR+ANWMHILY+NRS AHKA
Sbjct: 181 PTGNLDEEEWVTVYGFSPGDTNLVLREFEKCGMVLKHVPGPRNANWMHILYQNRSDAHKA 240

Query: 241 LSKNGIQINGMLIVGVKPVDPIDRQTLDEKLNNPGFMVLPPVSSRTAELATRGGPVRPYN 300
           L+K G+ ING++IVGVKPVDPI +Q L+E+LNN GFM LPP SS      T     RP  
Sbjct: 241 LNKAGMMINGVVIVGVKPVDPIQKQALNERLNNQGFMPLPPPSSTR---NTARPLSRPQY 300

Query: 301 FQNGNSYARQSGGTTIASPSKSLVSKVMDLMFGV 332
            QNG++++ Q  G  +ASPSKS+VSK  DLMFGV
Sbjct: 301 LQNGSAFSPQPSGGAMASPSKSMVSKFFDLMFGV 329

The following BLAST results are available for this feature:

BLAST of Carg09503 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954270.1	5.8e-188	100.00	nuclear pore complex protein NUP35 [Cucurbita moschata] >KAG6575518.1 Nuclear po...	[more]
XP_022992333.1	2.2e-187	99.70	nuclear pore complex protein NUP35 [Cucurbita maxima]	[more]
XP_023521774.1	6.4e-187	99.40	nuclear pore complex protein NUP35-like [Cucurbita pepo subsp. pepo] >XP_0235218...	[more]
XP_038900103.1	1.1e-165	89.43	nuclear pore complex protein NUP35 [Benincasa hispida]	[more]
XP_022151212.1	2.5e-162	87.01	nuclear pore complex protein NUP35 [Momordica charantia]	[more]

BLAST of Carg09503 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04326	4.5e-119	66.77	Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana OX=3702 GN=NUP35 PE=1...	[more]
Q66IJ0	3.2e-16	28.98	Nucleoporin NUP35 OS=Xenopus tropicalis OX=8364 GN=nup35 PE=2 SV=1	[more]
Q8NFH5	2.7e-15	29.79	Nucleoporin NUP35 OS=Homo sapiens OX=9606 GN=NUP35 PE=1 SV=1	[more]
Q68FY1	3.6e-15	27.24	Nucleoporin NUP35 OS=Rattus norvegicus OX=10116 GN=Nup35 PE=1 SV=1	[more]
Q8R4R6	5.2e-14	29.34	Nucleoporin NUP35 OS=Mus musculus OX=10090 GN=Nup35 PE=1 SV=2	[more]

BLAST of Carg09503 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRZ8	2.8e-188	100.00	Nuclear pore complex protein NUP35 OS=Cucurbita moschata OX=3662 GN=LOC111456575...	[more]
A0A6J1JYW9	1.1e-187	99.70	Nuclear pore complex protein NUP35 OS=Cucurbita maxima OX=3661 GN=LOC111488673 P...	[more]
A0A6J1DCV4	1.2e-162	87.01	Nuclear pore complex protein NUP35 OS=Momordica charantia OX=3673 GN=LOC11101918...	[more]
A0A0A0K7B2	1.1e-160	86.40	Nuclear pore complex protein NUP35 OS=Cucumis sativus OX=3659 GN=Csa_7G452990 PE...	[more]
A0A5A7U592	5.5e-160	85.80	Nuclear pore complex protein NUP35 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Carg09503 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16310.1	3.2e-120	66.77	mitotic phosphoprotein N' end (MPPN) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017389	Nucleoporin, NUP53	PIRSF	PIRSF038119	NUP53	coord: 3..331 e-value: 5.6E-98 score: 326.7
IPR017389	Nucleoporin, NUP53	PANTHER	PTHR21527	NUCLEOPORIN NUP35	coord: 1..331
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 183..256 e-value: 6.7E-27 score: 95.3
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 182..266 e-value: 2.1E-25 score: 88.6
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 182..263 score: 31.868855
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..150
None	No IPR available	CDD	cd12441	RRM_Nup53_like	coord: 185..258 e-value: 2.36823E-36 score: 123.876
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 185..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09503-RA	Carg09503-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051028	mRNA transport
biological_process	GO:0006607	NLS-bearing protein import into nucleus
biological_process	GO:0006999	nuclear pore organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0031965	nuclear membrane
cellular_component	GO:0044613	nuclear pore central transport channel
cellular_component	GO:0044615	nuclear pore nuclear basket
molecular_function	GO:0005543	phospholipid binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0017056	structural constituent of nuclear pore
molecular_function	GO:0003676	nucleic acid binding