Carg08897 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTTTCTGCTTTATTATTAACAATGGAGGTTCCTTCATCACGAAGCCAATTCTCTCTCTCTTTCTCTCTCTAGATTCATCGCTTCCGTATTCTCCTCTTCTTCCTCGGATTCCGGCGATCCTCTTCGCCGTGATTTCTCGTCGGAACTCGAGTCTGCTCGCAGTCCGGCAGTTTTTTCCCATTTCGAAGTAGTTCCCGCCGCCGCGCACGTCTGACTCCGGTGGATAAACCACCATGGCTGTAAGCTTCCATTTCTCTTCTTTTGTTTATTTGAATGTTTCAGTGTGCGTTTTCTTTGTTATGTTCTGTTTGGCTGCTTGGAAAATATCCTGGTTAGTGTGAAAACAGAGAATGAGAATTCAAAATTTGCTTTCCGACTGGAACTAAACGAGTTGCGTTTTCTCATTTCATTTGCCCTAAAATGATGTGAGAGATCTAAATCAAATTTCAGGCTCTGTTGAATGGGGATGGAAATCGAGAAACGGTTATTGGAACCGAATAGTTTTTTAGGATTGAATCAATTTGGAGAACTGTTCAAAAGCTTTCTAGATGTTATTTAGTCTGAGCGATTTAAAAATGGTTTTCACTTTCATCGTTTTCATACGGACGAAATTATTGCTAGTTTTCAATGCTTTTTGCTTCTGTTTGTTCATATGCTAGTGGTGGGTGCCACTTTTTCTTGTAGAAAGGTTCAATCACGAGCATCTGATTCACACTCAGAATTAAATTAATACTACTTTTGCCATTCTACTTAATCATTATAAGAAAGATGCATACATCCTTCCATATAAAACAATATCCTTGTACAGATGATAAACAAGTTGAGCGAGCTTATTTAGAATACATGTGGGGCTTTATTTTATTTTATTGAGCTCCCTTTTTGAGTATAGGGACATTCAAGTATTCTCTCAAACAATCATCTGTTCATTAATTCTTTCTAATTCTGCTTTATATTTTGAACTTTATGGAAAAGGTCTAGTCTCTGAATATGTGATTTTTGTCGAATTCTTAACAAATTCCTATAAACCAAGCTCAATTCTCCATCTTCTCAATGGCGTTTAAGTTTCTACATTGCCCATAACTTAGGGAAACACTAAAAAATCTCTGTTTCCTTTTTTGTTTTCATTTCACATTTGTTGTTTTATGATTGGACTCTTTATAATAGCTGTTTTGACATTTTGGTTCAAATTGCTAGATAGCGTAGATCCCATGAAGGCAAAGGAAAATCTGTTTGGATTAACATTATGCATTTCATCTCTAGCCTTAGGCACTAATTATGGATGGAATTCTTTTGAGTGCCCCCCACTTTTTCAAAGAAATGAGCAATTTTCCAAACTTGTGAAGGAATGGAAACCTTCTTGTTTTTGCTGAAATTGTCAAAGTTGCCGTCTGTTCTTTTGGGATCAGTTGGTAAATATGGATATGGATGATATTGATTCTTATTCAAAGACTTATATTTGTGGTGCATCTTTTAGGTCAATTGTAGGTAATGATCATATATGGTTCATACATTAGAGCTATCTCAAGCACGTAGAAGTGAGGATTTAAAATCTTGAACATTTTGGTTGATAGTGTAGGTGAGATCCCACGTTGGTTGGTTGGTTGGTTGGGGAGGGTGAAACATTTTTTTATAAGAGTGTGGAAACCTCTCCCTACTAGATGCGTTCTAGAAACCTTGAGGAAAAATGACAATATGTTCTAGCGGTGGACTTGGGCTATTAGAGCATATGTCTGAACTAGAACTAGAACTAGATGAATTAATGTTCAAATTGACATAGCTATCTTTCTATTTGTTCATAATCGATACGGAACTGAAATGGTTGCAAACTAACCAAAGGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATGATGAACAAAATCAGAAGGTAATTGAAGAACTCTCTTCCATTTCTCAGCCAACCACGTGAGATTACTGAGATTTGATAATGCAAATGTCTTACATTCTTCTGTTCTTCCTCAAAATTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGCAAATGATATTGTTCTTTGCATTTTCCACGTGAGATTACTTAGATTGCATGAACATGTGAGAATAATGTAGATTATTTCATGGATCTGGCTGCAGCTCACCTCCTTCAATGCCATCTGATTGAAAGTGTTTGTCTGTGGCCAAAGTTGTAAGCAAAGACAAAATTTGATTGTGTTGTTTGGGGTTTACAATTTTTTCTTATTTCGAGATTCATCTGTTGGATATCTATTCTTCATTTTAATAACTGTACTGTGATTTTGGTGTTATGTGTTCTTATTTAATGTTGTAATGTGTTCTTATTTAATGTTGTAATGTGTTCTTATTTAGTTACTATAATTTTAGAAAATTACAATTGTAAGTGATATTATTTTGTTAAGTATTTCAAAACATTTTTATTTTAAATTGAAGGTTTGTAGTTCTATGACGAAGAAATGCCTATTTGCTCAACATAATAGGACTCGTGTGGATTCGTCCCCAATAGGGCAACAAATAGGGGAAGGAGTAGGAGAAAATCGTCTTTGTTAG ATTTTCTGCTTTATTATTAACAATGGAGGTTCCTTCATCACGAAGCCAATTCTCTCTCTCTTTCTCTCTCTAGATTCATCGCTTCCGTATTCTCCTCTTCTTCCTCGGATTCCGGCGATCCTCTTCGCCGTGATTTCTCGTCGGAACTCGAGTCTGCTCGCAGTCCGGCAGTTTTTTCCCATTTCGAAGTAGTTCCCGCCGCCGCGCACGTCTGACTCCGGTGGATAAACCACCATGGCTGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATGATGAACAAAATCAGAAGGTTTGTAGTTCTATGACGAAGAAATGCCTATTTGCTCAACATAATAGGACTCGTGTGGATTCGTCCCCAATAGGGCAACAAATAGGGGAAGGAGTAGGAGAAAATCGTCTTTGTTAG ATGGCTGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATGATGAACAAAATCAGAAGGTTTGTAGTTCTATGACGAAGAAATGCCTATTTGCTCAACATAATAGGACTCGTGTGGATTCGTCCCCAATAGGGCAACAAATAGGGGAAGGAGTAGGAGAAAATCGTCTTTGTTAG MADKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGARTPTLPQNSNIPDNQNDEQNQKVCSSMTKKCLFAQHNRTRVDSSPIGQQIGEGVGENRLC Homology
BLAST of Carg08897 vs. NCBI nr
Match: KAG7036250.1 (hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 211.8 bits (538), Expect = 2.7e-51 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of Carg08897 vs. NCBI nr
Match: KAG6606311.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 135.6 bits (340), Expect = 2.4e-28 Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0
BLAST of Carg08897 vs. NCBI nr
Match: XP_038888923.1 (RPM1-interacting protein 4-like [Benincasa hispida]) HSP 1 Score: 81.3 bits (199), Expect = 5.4e-12 Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 0
BLAST of Carg08897 vs. NCBI nr
Match: XP_022887205.1 (RPM1-interacting protein 4-like [Olea europaea var. sylvestris] >CAA2935327.1 Hypothetical predicted protein [Olea europaea subsp. europaea]) HSP 1 Score: 60.5 bits (145), Expect = 9.9e-06 Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 0
BLAST of Carg08897 vs. NCBI nr
Match: XP_015086553.1 (RPM1-interacting protein 4 isoform X1 [Solanum pennellii]) HSP 1 Score: 58.5 bits (140), Expect = 3.8e-05 Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0
BLAST of Carg08897 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04 Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0
BLAST of Carg08897 vs. ExPASy TrEMBL
Match: A0A0A0L950 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G630240 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11 Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0
BLAST of Carg08897 vs. ExPASy TrEMBL
Match: A0A6N2AQE8 (AvrRpt-cleavage domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_006924 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05 Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0
BLAST of Carg08897 vs. ExPASy TrEMBL
Match: A0A6A6K948 (AvrRpt-cleavage domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_026145 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05 Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0
BLAST of Carg08897 vs. ExPASy TrEMBL
Match: M1CPC9 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05 Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0
BLAST of Carg08897 vs. ExPASy TrEMBL
Match: M1CPD0 (RIN4c protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05 Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 0
BLAST of Carg08897 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 ) HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05 Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0
BLAST of Carg08897 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 42.4 bits (98), Expect = 2.6e-04 Identity = 18/40 (45.00%), Postives = 25/40 (62.50%), Query Frame = 0
BLAST of Carg08897 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 41.6 bits (96), Expect = 4.4e-04 Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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