Carg06313 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg06313
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 7864976 .. 7867122 (+)
RNA-Seq ExpressionCarg06313
SyntenyCarg06313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCAGAGCCTACGTCATAATTTGTGGCAGCGGGGGCCTGCGTTCGCGCGGCCCCTTCCCAATATAAAGTCCAATTGCTTCACAAATTTTACTACCTCGTACGTTGATGCTCGAAGGCTGGATTGTTTGAGATTTGCTTCGGCGCCGCCGCCACTTCTCCGGTAAGTGCAACGACGGCGGCTACGAAGTCTATTAAATGCGCGACTGTTGAAGATGCCTTGCCTTCTCATTTCGACGGTATGATTCATCCTCAGGATTTTTCATTTTAGCTCGTTTTCTAGCTTATCCGCAATTGCAATGTAGTTTCTCTCATTCTCTATTTGATTTTTTTCTCTAGATTTTTGCCATTTTCGCCTGTTTTCTCGGCGTTTTTTAGTTCATCTGAAATTTCGCTTTTGTTTCTTTCTAAGAAAAGAGAATTCTCGGTTTGATTATGATGTGTTTTGTATTGGCAGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGGTGATTTCCATTTCCTCTGCTTCTGATTATCATGCTTCATTTATTCTGTTTTGTTATTAAAATTGTAGCGATTTTCTTTTCTGAGATTTCTATCTGTTCATCTGTTTAAGCTTAAACCCTAATCGACTCAAATCGCCGCTTCCAATGAAGTATGAAAACCTTTAAGTCTTGCAAGTGGAGTGACGATTTAGGAGACTTTAGCGAATTACAAGACAAATGAAGTCTTTATGATCACAGGATCGAATCGAAACCAAACACAAACTATAATCACCATCGGATTGTAGATTATCACCCGAGTTTTCTTGTCGTAGATTTTATTTTTGTTTTATCAACAGGTATAGGATTTGGATATCTGAAAAGGTTATATATCAAGTACTTACAGGAAATGGAGATGGACTTTTAAGTTGAAACTATATTTCAAAAGGTTTCTTCTCAGAATGTGTTCCAAATCTTTCCGGTTTGTAAGCTACTCCATAGATCGTTTCGTTATTGTTCTTCACTTGTTTCTTTTGTCATTGACAATAATCAGTTTATCCTTATAGTTGGAAGGGAAATCCAGTGGAAAAGTAAAGAGCAAGAGTTCTTTTTCTAAAGGCACTCCATGACATTGTTGTAACAGCTCAAGTTCACCGCTAGCAGATATTATCCTCTTTGGATTTTTCCTTTCGGGTTTCCTCTCAAAGTTTTTATAATGCGTTTGTTAGGGAGAGGTTTCCACACCCTTATACAAAAATGCTTCGCTCTCCTTCCCAACTGATGTGAGATCTTATAATCCACCCCCCTCTTCAGGGCGGCCCAACGTCTTCACTGGTACTCATTCCTCTCTCCAATCAATGTGAGATCTCACAATTGTCTTTTAGAAATATGTGAATGATGGAAAGCTTGATAGACAATCTTAACTTGCAAACTGAGTATAGCTCAATTGGTTCAATGCGTATATCCTTGATTAGGAGGTCAAAAGTGCGAATTTCCCCATTCCCATAAGTTGTTCAACTAAAAAAAGAGAAGTCAACCATAACTACAAAGCCACTAGATCAATGGTTCCTCTTAAGATCCACAATCATCGAGATTGGAGAAAGATTTTAAACTGAAGCCTCCAAACAAGCCATCACCTGAATAAGAATGCACGCAATCCAAACTTGGGGACACTATGCAAGGAGTGTTAGCAATGGCCCCTTGCATTGGTGTCTCTACAATCTTGCTTGGATCAAACTTTAGTCTTTGGTCCACTTTAAATTGGGTACTCCAATCTTTAAGAAGACGATATTGCCACTGTATCAAGTTAAGATAATTTCAACTGTTCAACTAATATGATACCAAAGTGCTGTGTCAATGTTAAAAGGATCGTTTTACTGGTTAAGAAGATTATAACAGCAAAGACCTTTGAGGGCCACCTCCTTGCCTACTCGTTTCTCTATATGTCTATTGTTCTGTAATTTCTAGGGGAAGGTTATTCTTGAAGCTCCTACTCGTCCCCCACCTGCCCCTACTCTTGTTCCTCAATGTTCTTTGCATTGTGTGATAGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGG

mRNA sequence

GGCAGAGCCTACGTCATAATTTGTGGCAGCGGGGGCCTGCGTTCGCGCGGCCCCTTCCCAATATAAAGTCCAATTGCTTCACAAATTTTACTACCTCGTACGTTGATGCTCGAAGGCTGGATTGTTTGAGATTTGCTTCGGCGCCGCCGCCACTTCTCCGGTAAGTGCAACGACGGCGGCTACGAAGTCTATTAAATGCGCGACTGTTGAAGATGCCTTGCCTTCTCATTTCGACGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGG

Coding sequence (CDS)

ATGCCTTGCCTTCTCATTTCGACGGATTATGTTCCGACTGTTCTTGGCAATTTCAGCGCCGATGTTTTGGTTAATCGGCAGTTCTTAATCAGAGCTTCAAGGACACTGCTGTGTTCTGATTGGCAGTCCTATCCTGTTGCTTGGGATGGCCGATCTGATAGACGGCGAACAATTCCTCTTGGACTATCCTGG

Protein sequence

MPCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLLCSDWQSYPVAWDGRSDRRRTIPLGLSW
Homology
[Close]
BLAST of Carg06313 vs. NCBI nr
Match: KAG7028737.1 (hypothetical protein SDJN02_09918, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MPCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLLCSDWQSYPVAWDGRSDRRRTIPL 60
          MPCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLLCSDWQSYPVAWDGRSDRRRTIPL
Sbjct: 1  MPCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLLCSDWQSYPVAWDGRSDRRRTIPL 60

Query: 61 GLSW 65
          GLSW
Sbjct: 61 GLSW 64

[Close]
BLAST of Carg06313 vs. NCBI nr
Match: KAG6597265.1 (hypothetical protein SDJN03_10445, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 3.2e-10
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 2   PCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLLCSDWQS 44
           PCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLL     S
Sbjct: 70  PCLLISTDYVPTVLGNFSADVLVNRQFLIRASRTLLVESLDS 111

[Close]
BLAST of Carg06313 vs. NCBI nr
Match: XP_022957090.1 (uncharacterized protein LOC111458545 [Cucurbita moschata])

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1  MPCLLI-------STDYVPTVLGNFSADVLVNRQFLIRASRTLL 38
          MPCLLI       STDYVPTVLGNFSADVLVNRQFLIRASRTLL
Sbjct: 1  MPCLLISYTNNTFSTDYVPTVLGNFSADVLVNRQFLIRASRTLL 44

[Close]
BLAST of Carg06313 vs. NCBI nr
Match: XP_022974770.1 (uncharacterized protein LOC111473496 [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 4.5e-04
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 7  STDYVPTVLGNFSADVLVNRQFLIRASRTLL 38
          STDYVPTVL +FSA+VLVNRQFLIR SRTLL
Sbjct: 26 STDYVPTVLCDFSANVLVNRQFLIRDSRTLL 56

[Close]
BLAST of Carg06313 vs. ExPASy TrEMBL
Match: A0A6J1GZJ6 (uncharacterized protein LOC111458545 OS=Cucurbita moschata OX=3662 GN=LOC111458545 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.5e-09
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1  MPCLLI-------STDYVPTVLGNFSADVLVNRQFLIRASRTLL 38
          MPCLLI       STDYVPTVLGNFSADVLVNRQFLIRASRTLL
Sbjct: 1  MPCLLISYTNNTFSTDYVPTVLGNFSADVLVNRQFLIRASRTLL 44

[Close]
BLAST of Carg06313 vs. ExPASy TrEMBL
Match: A0A6J1IET5 (uncharacterized protein LOC111473496 OS=Cucurbita maxima OX=3661 GN=LOC111473496 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 7  STDYVPTVLGNFSADVLVNRQFLIRASRTLL 38
          STDYVPTVL +FSA+VLVNRQFLIR SRTLL
Sbjct: 26 STDYVPTVLCDFSANVLVNRQFLIRDSRTLL 56

The following BLAST results are available for this feature:
BLAST of Carg06313 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028737.11.1e-29100.00hypothetical protein SDJN02_09918, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597265.13.2e-1088.10hypothetical protein SDJN03_10445, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022957090.11.8e-0884.09uncharacterized protein LOC111458545 [Cucurbita moschata][more]
XP_022974770.14.5e-0487.10uncharacterized protein LOC111473496 [Cucurbita maxima][more]
BLAST of Carg06313 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg06313 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GZJ68.5e-0984.09uncharacterized protein LOC111458545 OS=Cucurbita moschata OX=3662 GN=LOC1114585... [more]
A0A6J1IET52.2e-0487.10uncharacterized protein LOC111473496 OS=Cucurbita maxima OX=3661 GN=LOC111473496... [more]
BLAST of Carg06313 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06313-RACarg06313-RAmRNA