Carg05770 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05770
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase III subunit RPC5 isoform X1
Location	Carg_Chr16: 4351574 .. 4360922 (+)
RNA-Seq Expression	Carg05770
Synteny	Carg05770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAGGGGGTAGAAGACGAAGTTATTGTTCTTCGCCGGAGCAGTTGCTGGAGAGCCTGATTGATTGCATATTAGAAGAAAAAACCTGACCTTCATCGGTTTTTTTCGAGTTCGAGAACTTCAACAGTTGCAGAAGCTTCTCGCTGTTCATTCACCCCGAGAGAGGAACGCGCCGAAGCCTTCAGGATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCGCGAACCTCCAGATTTGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAATCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTGAAACTCCCGTTTCGAAGCCGGAAGTTGCAGGGCCAGATGCTCTAATTGGGGAGAAGAAGGAAGAAGGCGAAGAAGTTGAAGTAAAACCTAAAGTCGAAGCTTCACTTCCTAATGGAGTTGATAAAATGGATGTTGAAACTAAGTTGGAAGTTGAAGAGGAGACAATGGTGGAGGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCTGTTGATATCAATACGAAAGTTAGTCTTCGTTTCTTGCTTATTCATACTATGTACCATTAGTTTTTTTCCCTCTTTAAATTTAATTAGTTTTGAAATTTGAACTCGACTGTCACCTATTTCCAGTTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTTGAAGGGCGATGTGACGAGGTGAGCATTTTCTTTGATTCCTTTTTGTTCTTGAAGAATTTGAACCATACCCTTTTAATCTCAATAGGTAAGAGTTAAACCCACCACAGGGGAAGTGGAAGTTGATCTGAATGTGGATATTGAATCCAATAACTATGACAGTAAAGCCGATGCCAATTTGCAAATGAAGAAGCAGGTATCTTCTCTTATGGTTCTATTGATACTGGTAGTTCACTTTTATCAGATTTAACTTAAAAAAGAATGCTAGATTCGTAGGATTTTCCAAAAGGTGAAAAGGTGCAAGTTTTATTAAACCGAATTCAGCAACAGTTTCTAGTTGCATCTTAGTTCTTTTCGTTCTTTTTTTCCCCCCTGTCGTATTAGTCTCGAGTTTCATCTCACTTGATGAACTGTTTTTCTTACATGATGTACTACGTTTCATCTGGTAATAGAGTTATTTCTTTCGTGTACTATATACAAATGAGGATTGAGTTATTGGTGCTGTATTTTAGTGGATACCAACAAAAGCTTGTTTCTGGTTCAGACTTTGAAATCTTCATGGCAACCTCCTATGGCTACTTCCTATGCTGTTGGGCTGCTTATGGGTGATAAGGTTGTTTCCCTATCTCGCATCTTCTGAACTTTATTCTTTTCTTATCATTGATTGTAGTTGATGGGCCTTTTTTTTTTTTTATTTGTTTCTCTGGTACTTGGTTCATCTTTTAATTTCGAAACAACAAAGGTTGACCAAGTGGTTAGTAAGAGTTAAAGGGCTTAGAGAGAATAGATTCGAGCTATGGCAGTCCTACCTAGAATTTAATATTCTATGAGTCTTATTGGTAACAAAATATAGTAGGATTTGGCACGTGTCATGCGAGAATAGATGAGGTGCGCAAATTGGCCTAGAACGGTACTTGAAAGTTACATAGCCATAACTCCATCAATAAACTAAACCACCCAAAGTAACAAAATTAATATTGTAAGAGGAATAGTTACAAAACACTTATACGCAGCACAATAAGAAGCCACATTTAGCTCAACAATATCAGTTTTATCTTCCGAAGGAGCTCGTTTGCTTAAAAAAATGTCCCCACAAAATTGGCTTGACCATATATATCCTTAAATTTTTTGTCTTCTCTTAAAACTATGATTGTAAAGGAGTTGGAAAAGAAATAAATCTTGGGTTCTGTTGCCATTTTTTCGATAGGGAAACAACAAATATTTTGGTCCTGTTCCTGCTGCGAGGTTTTCTTTCAAATCCTTTTTTTTGTTGTTTAGTGGACCCTTTCCTTTCCTTTCCCGTCCCAGCTGCCTCACTTTTTTTGTTGCTATGGAAGACTAAAATTTCCAAGAAGGTCAATTTTTTTTTGTTTGGCAAGTGCTTCACAGTAGAGTTTGCACATTAGATTGCATTATGAGGAAACATCCTTTAGTTAGGCTACTGTTTTATTCTTTGAAGAAAAGCAGCAGAAAGTATCGATCACCTCATTTGAAGTTGTCTGTTTGCTTCCTTGGCTGGGGACTATTTTTTTTATAAATATTTTTGGAGATTGTTTAGCTCGATCTATTGTGGAGGAGGTGATTCGATAACCACCCTTTGTGGAAATGGTTGTTTTCTTTTGTTGGCCAACTTTTGTGCAATTGTATTAGAGTTTTTTGTGCTTAAGAGAAACAATAGAATTTTAGAGGGCTTAGAGTTTTTGGGAGGGGTCTCTGGGCCTTGGTATATAAGAACTTTTGTAATTACTTTTTAAGTCTTATTTTGTTTCATTGGAGCTTTTTTTTAGTCGACTCCTCTTCTTTGTGGGTTGTTTTTGTGTATTTTCTTTTATTCTTTCTTTCTTACTCAATAATAGTTGTATTCTTTCATGATGCCTTACATTGATATCTATACCTTTGATGAACATCACACCATTTTTTGAGTCTAACGTTGTATTAAAAATGGAAAGTTATGCTTGGATGTGACTTGGGTCTGTTCCTATGATAGTATCCTGTCGGCTGAGAACATAAACTAAACTTTTATTTTGTATGGGTGAATTAAGAATGTTGCACCCTGCTGGATCTTATACTATTGCATCCGTAATTGATTGAATGGGAAACCTAAATTTTGTACTTTGTAAAATTGATTTTTTTTTTCTTTTCTAACTAATTAGAATGAATGCAAGAATATTATAGGTTCCTATGTATTCCCCTAATTTATATTATGATGGTTTCCAAGACATTTTTCAAATTCTAGCATAAGGACTTGTTTGTTTCTATTTCCTTTAAAAAATAAATAACTATTGCTAGTGTTTCCATGGGTTATATTGCAGCTACACCTGAATCCCGTACATACAGTAGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAATTAATGTTAGAGCCGATCCAAATGTTAAGTCAGAAGAGCATACAGATGTTAACTCTGCAGGTGGATCAAGGAAGCAGGTTATTTTCTATTTTTTCTATTCTATACTAAATTACTACTGAAATATTCTCAACACAGATTTTATATTTATTTTGGTTACTGTAAAGTTATCAGTCTTTTTCTTTATAGGAAACAATTTGATTTTATTGATAAAATAAAATCATGAAATGATGAAATCCCATCCATTGGATTATAAAAAACTATTCCAATGGGCCACAAGGGTAGATAAATTATACTACAAAGGGAGCTCAATTTACAGCATGAAAGAAATAGATAAGTAATTATGAGAGATGTGATTGGAGATCTCGTTCCTTGGCTGAGAAGATGCGAGAGTTATTCTATAACCAAATAGTCAGACAAAAAAACTTGGATAAAGTTGAGCCATTTTCTTTCATGAAGGAATGCCCAGTGAATATGAGAGAAGGGAGGACCCAAATATCATAAGGAAAGGCAATCTGCCACCCAAATGCCTCTAGGTTGTGATCTCAAACAAATCTAGCCAGTTTGCTCCAAATGAAAAGGCAACTGTGTCATTCCTCTTCATTTTTGCACAATATGCAGCAGCTATGAGAGATGTCAATCCTAGGAGATATTCTTTGCAGCTTTTCGTGAGTATTGAGGCATGAATGACTAAGTTCTCATATAAAAAAACTTAACCTGTTTAGGATATTTTCCATTCCAAATGGAAAGGTAAAGATCTCTTTTAAACTGCATCAATACTCATGACAGATTACTAAGAATTTGCAATGGCTGGCTCTTACCCCTCTATGTTTAGATTGTGTATGGAAAGAGAGGAGAGTATAGACCATCTTTTCCTCCATTATTTCCCTAAAAAGGCTGGAATTTTCTGTTTCGTACTTTATGCATGTCTCCCAAATCAGATTGATGACTAGTGGTTGAAGTGCTCAATGGTTGGAAGATGGAAAGAAAAGCTAGAATCCTTTGGGACTATGCTGTTAGGGCTTTCCTTTGGGTTTGTTGACGTGAAAGGAACAAAAGACTTTCAGAAGATAAGTTTACTGATTTCATATCTTTTTGGGGCAACCTTCAACTTTTAGCCTCCGGTGGTGCACACTTACAATCAATTCTTTTTTAATTACCCAATTGCGTTTATTTTCAACATTTTTTTAATTAGCTCCTTGGGCGGGGGTTCTCTCTTCCCCTGCCCCTAAGTTGTTCTTCTACTGTTTTGTCTAATGCATATGTTTCTTATAAAAAGAAGATAAAGATCTCTCTTACGATAATTGCTGGCTGAGGATAAGAACTTGACAGAGATATTGTAGAGAAAACCTTATCCTTTAGACATTATCCATGGGATGGGCATATTGCACTAGCAAATATATTTGGGTAGAAAGAGATATTTCAGCGCTATGCAATATTAGTATGATCGTTGATCAAGAGCTCTTAAGTTCCAATTCAAATGTGCGCTGCTGTAGGTAATATATATATAGACATCCCTTAGCAGCTGTTTAGCAATTTGAGCCCAGACATGGTAGTTTGTTGCTTCGCCCGTCAGAAGTAGCATAAAGGGAGAAGGCTATTTGGCAGAGATAACCGTATTGGAGGACTATTTATTTATTTGCAGCATACCTTATTTCTTTGAATACCACGTTTCTTAACTTTTTTTTCATAAGCTAACTTGCTGACCCTATCATTATATTGCATTAGTTCACATCTGAGGTTTCATATGTGTTCTGGTATTTATGGACTTCTCTCTTGTTTTCTTGAAACAGAAGAAGCAAACAGGACCTTCAACGGAACCTAAAACTGTAGATGAAGAGGTAACACCATTGAACTTGGGTGCTCAATTACTACTTGTGGGTTTAAGATAGTTTTTGAGAAAAGTATTTTTAGTGAGTATTTTTCCTCTTGAACTTTTGGAAGAACCACTTAACTAAGTGATGCTTCTAGAAGCAGTTTAGTGCCAAAAATGTTCTTAGGATTTTCAAAATCATTTTCTATATGTGTTTGGATTAACAAAAAGCATTTCACCTCTACATAAGTCACCTCAACCTTAGCATAGAAGTGCCTTACTATTGAATCCATCATTTATAGTTGTGTAATTGTTTGGTTCACTTATTTTCTCTAGTGCTGGATTCCACTTAAGTACTATGGTCTCGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACAAAAAAATTCCCCCATGCAATTCTCAATGAGCCCGTATGTGTTTTTTGCTCGTTGATGCATAAACTCTTTAATACAGTAAATTCATCGATTTAATAATATTTATTTTGAGCATTTGATTTGGTTCTACTTATTTCAGGCATGACTATGTGGACTCCTTGTGTCCTGGTGCGAGCTCAAGTCGCAATAAGCCCAAAGGTCCATCTAAAAGGTAAACACATTTGCACGCTGATGTCTTAATCCTACTGATGGACACTAATGGCTGCAAACACATTTAATTTATGTTACTGAACATTTAACTAGTCAGGCAAGTAATCTGGGAGACTTCAAATATTTACTGATGTCTTAATCCTACTGATGGACATTTCAGGTTTTTACTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACTGAGGTTTGTTTGTAAAATGAATACTTGTGATTTTTTTTCCTGATTGCCATAAGAAGATATCAGTGTATGTGCACATCTACTCTATCGTCTAACTTTTATTCAGTATTAGCTGGCTGTACATCCATGTCCATTTATGCATTCATCAACCATTTGTTATTATCATGAGATCATATTTTCAAATTGTGCTCTCTCAATTAATCAAGGGATTTTTTTTTTTTTTTTTTTTTTGTCAAATATGCTTATTTAGTTTTATAAGTTAGTATCATTTTTTTAGTATCTGGGTTTTTGGTCAAGATACGCCCACCTCTAATCTCAAGCGGTCACCATAGTTTGAACTCATTTCTTCTATGTTTTTTACATTTTTCATTGTTCCTATGACTACAATGTCAAACCATAGTGATTATTGTCATTGCTATATAAAAATAGATAATATAACTTATATTTAGTAGCATCACCAGAAGCATATCACGAAAAAGGATTGTATTGAGCATATAAAAAAATGTTAGTCCAAAGTATGATGAACTAGACCAATCAATTTCAATTGCTTAAAGTGAACAGAGAGGACTGTCTAAAGCCTTAGGTTAAAATTAACCTCCACAGCTTTAAAGCATCACATCCGCTAAATAAAATCCATCCCACATTTTCATTTTGTTTTTTATTTTTTTATATGAAGTTAAAAAATATTGCAAATCCTTTACAAATTTGCAATTGGGTGATATTTACTTCCTTGCCTTCTCGATCAAAGTACAGTTTGGAATTGAAAGGGGAAGTGGGGGGAGATGCTAATGACTTAAAGTGTATTATCTTTTTATCATAGTCTTTATATCATGCTGATTCATTGTTGATGACTTATTCCGTGTTTGTTTTGTGAATAATCTTTTTCCTCCTTTCCAATAGGGACCTCCGATTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAACCAGACGAGTTTATCGAAGCTCTTCAGCAGTATGCTCAGTCGGTGCAGGGTCTCTGGGTTGCAAAAAGTTCATTTTTACTTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTGGTTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAGATTTAAGGAGAAAACAGATCGTTTATTTTTGAATAACTACGTGGATATTGTTCAGAAGCAAGAAAAGGTCTGGCGATCTGTGGAAGAAGGTATCACTAATTCTTTCCGGGGATCTGTGAAAAACATGTCCCATGCAAACGCTGCACCAGTAAAGCCTGAAATGGTTCCTAAACCTGAAAAACAAGTCATTCACGACAAAGCTTCAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAACTCACAAGGTTTGCAGGTAGGGGCCGGTTTTCTTCTTGCTTGTGCTTATCATTATGAGAGTTTTCTTGGTTGGAAAGGACTGCTACTTTCTTGAATAGTATGGCGAGGAGTTTTGATGAGATTTAGGATATCATTGCCTTTTAACGTCCTTTTTTCATGCTCTTTCTATCATTTATTAACTTCAATAAATGATAGGTTTCTTTTAGATGGGAAAACATGTATTCATCTGTTCGGTATGTGTTTATAAGCACTTGCATTGTTCCTTTGAGCTGTTTTTTGGGGAAGTCTTCATTTTGTAATAGCCTCGAGTTATCTATCATGTGACATCGTAATCTATTCTTCCCGTGGTGTCATGGAGAAGATGAATCTTCATGTAGCAAAGCTGATGTGGTTGCCTTATTATTGTAGCTTTCAGTTGATATGTCAAGGTTTGCGTGATTTGGCCGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAGAATCATCTGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCTTGACATCATCTCCAGAGCATCCAGAATATGATCCATTAAGGTTGCTGGTGAATTAAATTCATGGTCAAAGTCTTTTATGTGAAAAACGCTGTTTGCATTATTTTTCCATGTAAGAACACGATAAATTGGCATCTTTGTTCTTAACTTCATGCTGCACTATGCAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCCAAGCGTGAACTTGGGAGAGCAATCAATAGCAATGAATATAGCAAGGTTAGCCACCATGTTATTCTATCTCTCACTCATTTGAATTTCTTCCCGCATGGAAAGGAAACTTCTTTAATAGATTTTGGTTCTTATGCTACTGAAATATTCTGGTTGAGGATCTTTATTGTTCAGTGATTATTTTTCTTTTGACGTGAAACATTATTGTTCAGCTTGAAATCTCTTGCATTTTCTAAAAGCGCCATCAATCACCGTTGATTTTATGCACTTTCTAGTGACGATCTTTTATCCCCGGATTGGCTCGTACAATCATTATGAATTAAATAAATGTTTCGGCCTTCTTCAGTGTCAAGATACATGATTCTGGTCTTACCCTGTTGCCTTTTGTGCAGGTAATGAACGAAATTTGCGTGTCCCATGGTTCTGCTTGGGCCTTGAAGAGTGGCGATGGAAATTCGAGATGACTAGGTTCCTCTCGTGACATTCCGAGCACAATTAAAGAGGTTCAAGGCAAAGCCAGCAACCAGATCTCCTCACTCTGCTGTACAACTTTCTTTACTCTTACTACAAAGTATATCAAATTACCGAAAGCATAGAGAGAAAGAGAGAAGTTGTTGGTTTTCTTTGCTCTGATTGATAAAATATGCATTTTGCAGATAAATTGAATGCCATTTCCCGTGGCCCTCCATCATTTGATCCACATCCAAATTTTGACTCCATGTATTTTCTGCAACATTTAGATCTGATAAACGTGGTGCTTGTTTTCTCTATGTGATTACTGTACTTAATAGTTTATAATCCTCCATTTATCAATGATGCAAAAGGCCATCTGAGCTAATAAGATTTCAAATTATAGCAACTTTTAGAAAGAGTTAACAGTGTGAAACTGTTCATCTCGCTGTTTGATGCCAAATTACTCTACTTTCTTTATCATCAGGTACCAAATTCCAGCGCTGGGAACCTTCTTTGGCAGACTGAACACTCCTTAATCTCGTTGTTCAACACAAAAATTTTGAAATGTACAGACAAAGGTAAATACTATCCCTCTTATAATAAGATTCAGCAGCTGCTTATGTAATGCAAACTCAAACCACTGCACAATATTAGGTGATCCTTTGAGTGTTGGCAATGAACTAAGAGCTTCCGGCGTTGTTCTCTGCTTTGGTGGTGTCTTTTATTAACTATAGTTTGAGGACGAATTTAGTCTTTGAACATTGTTTATTTAGTGTTCAAATTTCAAAAAGCTTAAGAC

mRNA sequence

AAATTAGGGGGTAGAAGACGAAGTTATTGTTCTTCGCCGGAGCAGTTGCTGGAGAGCCTGATTGATTGCATATTAGAAGAAAAAACCTGACCTTCATCGGTTTTTTTCGAGTTCGAGAACTTCAACAGTTGCAGAAGCTTCTCGCTGTTCATTCACCCCGAGAGAGGAACGCGCCGAAGCCTTCAGGATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCGCGAACCTCCAGATTTGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAATCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTGAAACTCCCGTTTCGAAGCCGGAAGTTGCAGGGCCAGATGCTCTAATTGGGGAGAAGAAGGAAGAAGGCGAAGAAGTTGAAGTAAAACCTAAAGTCGAAGCTTCACTTCCTAATGGAGTTGATAAAATGGATGTTGAAACTAAGTTGGAAGTTGAAGAGGAGACAATGGTGGAGGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCTGTTGATATCAATACGAAATTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTTGAAGGGCGATGTGACGAGGTAAGAGTTAAACCCACCACAGGGGAAGTGGAAGTTGATCTGAATGTGGATATTGAATCCAATAACTATGACAGTAAAGCCGATGCCAATTTGCAAATGAAGAAGCAGACTTTGAAATCTTCATGGCAACCTCCTATGGCTACTTCCTATGCTGTTGGGCTGCTTATGGGTGATAAGCTACACCTGAATCCCGTACATACAGTAGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAATTAATGTTAGAGCCGATCCAAATGTTAAGTCAGAAGAGCATACAGATGTTAACTCTGCAGGTGGATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACCTAAAACTGTAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGTCTCGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACAAAAAAATTCCCCCATGCAATTCTCAATGAGCCCGCATGACTATGTGGACTCCTTGTGTCCTGGTGCGAGCTCAAGTCGCAATAAGCCCAAAGGTCCATCTAAAAGGTTTTTACTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACTGAGGGACCTCCGATTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAACCAGACGAGTTTATCGAAGCTCTTCAGCAGTATGCTCAGTCGGTGCAGGGTCTCTGGGTTGCAAAAAGTTCATTTTTACTTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTGGTTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAGATTTAAGGAGAAAACAGATCGTTTATTTTTGAATAACTACGTGGATATTGTTCAGAAGCAAGAAAAGGTCTGGCGATCTGTGGAAGAAGGTATCACTAATTCTTTCCGGGGATCTGTGAAAAACATGTCCCATGCAAACGCTGCACCAGTAAAGCCTGAAATGGTTCCTAAACCTGAAAAACAAGTCATTCACGACAAAGCTTCAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAACTCACAAGTTGATATGTCAAGGTTTGCGTGATTTGGCCGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAGAATCATCTGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCTTGACATCATCTCCAGAGCATCCAGAATATGATCCATTAAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCCAAGCGTGAACTTGGGAGAGCAATCAATAGCAATGAATATAGCAAGGTAATGAACGAAATTTGCGTGTCCCATGGTTCTGCTTGGGCCTTGAAGAGTGGCGATGGAAATTCGAGATGACTAGGTTCCTCTCGTGACATTCCGAGCACAATTAAAGAGGTTCAAGGCAAAGCCAGCAACCAGATCTCCTCACTCTGCTGTACAACTTTCTTTACTCTTACTACAAAGTATATCAAATTACCGAAAGCATAGAGAGAAAGAGAGAAGTTGTTGGTTTTCTTTGCTCTGATTGATAAAATATGCATTTTGCAGATAAATTGAATGCCATTTCCCGTGGCCCTCCATCATTTGATCCACATCCAAATTTTGACTCCATGTATTTTCTGCAACATTTAGATCTGATAAACGTGGTGCTTGTTTTCTCTATGTGATTACTGTACTTAATAGTTTATAATCCTCCATTTATCAATGATGCAAAAGGCCATCTGAGCTAATAAGATTTCAAATTATAGCAACTTTTAGAAAGAGTTAACAGTGTGAAACTGTTCATCTCGCTGTTTGATGCCAAATTACTCTACTTTCTTTATCATCAGGTACCAAATTCCAGCGCTGGGAACCTTCTTTGGCAGACTGAACACTCCTTAATCTCGTTGTTCAACACAAAAATTTTGAAATGTACAGACAAAGGTAAATACTATCCCTCTTATAATAAGATTCAGCAGCTGCTTATGTAATGCAAACTCAAACCACTGCACAATATTAGGTGATCCTTTGAGTGTTGGCAATGAACTAAGAGCTTCCGGCGTTGTTCTCTGCTTTGGTGGTGTCTTTTATTAACTATAGTTTGAGGACGAATTTAGTCTTTGAACATTGTTTATTTAGTGTTCAAATTTCAAAAAGCTTAAGAC

Coding sequence (CDS)

ATGGACCTGGACGACCTAGACGAACCGAGCCAGGTACCATCGCGAACCTCCAGATTTGCACCGAAGACCTCTAAATTCAAGCCGAAGCCGAAATCGGAAGTAGTTCCGAAACCGGAGCCCCAACAGCCGCCAACGAAGTTGGAACCTGAAACTCCCGTTTCGAAGCCGGAAGTTGCAGGGCCAGATGCTCTAATTGGGGAGAAGAAGGAAGAAGGCGAAGAAGTTGAAGTAAAACCTAAAGTCGAAGCTTCACTTCCTAATGGAGTTGATAAAATGGATGTTGAAACTAAGTTGGAAGTTGAAGAGGAGACAATGGTGGAGGATGATGATCCAATGGAAGAGGATGCTTCTGAAGATATGGTGGTTCGTGAAATCGACGTTCTGTTTACTCCTTCTGTTGATATCAATACGAAATTATATGTGTTGCAATATCCTCTTAGACCACGCTGGAGGCCCTATGAATTTGAAGGGCGATGTGACGAGGTAAGAGTTAAACCCACCACAGGGGAAGTGGAAGTTGATCTGAATGTGGATATTGAATCCAATAACTATGACAGTAAAGCCGATGCCAATTTGCAAATGAAGAAGCAGACTTTGAAATCTTCATGGCAACCTCCTATGGCTACTTCCTATGCTGTTGGGCTGCTTATGGGTGATAAGCTACACCTGAATCCCGTACATACAGTAGTGCAACTTCGACCATCATTTGAACACCTTAATTCTGGTGGCCCAAAAAGGAAAATTAATGTTAGAGCCGATCCAAATGTTAAGTCAGAAGAGCATACAGATGTTAACTCTGCAGGTGGATCAAGGAAGCAGAAGAAGCAAACAGGACCTTCAACGGAACCTAAAACTGTAGATGAAGAGTGCTGGATTCCACTTAAGTACTATGGTCTCGAGAGTGATCTATCAACCAGACATCTGCGAAGCATGGTGGCACAAAAAAATTCCCCCATGCAATTCTCAATGAGCCCGCATGACTATGTGGACTCCTTGTGTCCTGGTGCGAGCTCAAGTCGCAATAAGCCCAAAGGTCCATCTAAAAGGTTTTTACTTTCATTGTCTTTGGAGGAGCGGATTAAGAAATTGCTGACTGAGGGACCTCCGATTCAAAGATTTAGTGCACTTAAGCATTATGCCCCTGATTATGAACCAGACGAGTTTATCGAAGCTCTTCAGCAGTATGCTCAGTCGGTGCAGGGTCTCTGGGTTGCAAAAAGTTCATTTTTACTTCCGCAAGATGGCAGTGGACGTTGTGCTAGGGATTTTGTTCTTTCTTTGTTTAGCAAGAATCCAGTGGTCAGCTCTTCGCAGATAAATGTTCCAAAGTCTCTTCGGGACAAAGTGAAACATTTTTTGAATTGGTTTGGTGTTGAAAGACCTGCCTTTAAGGACTGGAGATTTAAGGAGAAAACAGATCGTTTATTTTTGAATAACTACGTGGATATTGTTCAGAAGCAAGAAAAGGTCTGGCGATCTGTGGAAGAAGGTATCACTAATTCTTTCCGGGGATCTGTGAAAAACATGTCCCATGCAAACGCTGCACCAGTAAAGCCTGAAATGGTTCCTAAACCTGAAAAACAAGTCATTCACGACAAAGCTTCAACTAAAAGCAGTAATGCAGCTCTTAACCGCAAAAGTACCATGTCGGATGAAACTCGAGAAGCTTTACCAAAAGCCCTTCAAAAGCTTTTTCAAACTCACAAGTTGATATGTCAAGGTTTGCGTGATTTGGCCGTGTCCCAGTCTACTCTTCCAAAAGCTGATGCCAGAATGGCGGTGGCTGCTGCATATGGTGTTGATGCTCCTCCAGATGAATTAAAAAGAATCATCTGCCAAGTTGCTACTGAGATTCATGGTCTCTATGTCTTGACATCATCTCCAGAGCATCCAGAATATGATCCATTAAGGAAAGTTGTCATTCAACTTTTACGTGGACGTGGACCTAAAGCAGTGCTTAAAAAAGCTGATGTTTTGGAAGCTTCCAAGCGTGAACTTGGGAGAGCAATCAATAGCAATGAATATAGCAAGGTAATGAACGAAATTTGCGTGTCCCATGGTTCTGCTTGGGCCTTGAAGAGTGGCGATGGAAATTCGAGATGA

Protein sequence

MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAGPDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDMVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLNSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERIKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNYVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSNAALNRKSTMSDETREALPKALQKLFQTHKLICQGLRDLAVSQSTLPKADARMAVAAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR

Homology

[Close]

BLAST of Carg05770 vs. NCBI nr
Match: KAG7015338.1 (DNA-directed RNA polymerase III subunit RPC5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1375.1 bits (3558), Expect = 0.0e+00
Identity = 700/700 (100.00%), Postives = 700/700 (100.00%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120
           PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120

Query: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180
           VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE
Sbjct: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180

Query: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240
           SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN
Sbjct: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240

Query: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300
           SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE
Sbjct: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300

Query: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360
           SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI
Sbjct: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360

Query: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420
           KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA
Sbjct: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420

Query: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480
           RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY
Sbjct: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480

Query: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540
           VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN
Sbjct: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540

Query: 541 AALNRKSTMSDETREALPKALQKLFQTHKLICQGLRDLAVSQSTLPKADARMAVAAAYGV 600
           AALNRKSTMSDETREALPKALQKLFQTHKLICQGLRDLAVSQSTLPKADARMAVAAAYGV
Sbjct: 541 AALNRKSTMSDETREALPKALQKLFQTHKLICQGLRDLAVSQSTLPKADARMAVAAAYGV 600

Query: 601 DAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLE 660
           DAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLE
Sbjct: 601 DAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLE 660

Query: 661 ASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           ASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR
Sbjct: 661 ASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 700

[Close]

BLAST of Carg05770 vs. NCBI nr
Match: XP_022929283.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929284.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929285.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929286.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929287.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP_022929288.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata])

HSP 1 Score: 1358.2 bits (3514), Expect = 0.0e+00
Identity = 696/705 (98.72%), Postives = 697/705 (98.87%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVA 
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120
           PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120

Query: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180
           VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE
Sbjct: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180

Query: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240
           SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN
Sbjct: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240

Query: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300
           SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKT DEE WIPLKYYGLE
Sbjct: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTGDEESWIPLKYYGLE 300

Query: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360
           SDLSTRHLRSMVA+KNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI
Sbjct: 301 SDLSTRHLRSMVAEKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360

Query: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420
           KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA
Sbjct: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420

Query: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480
           RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY
Sbjct: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480

Query: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540
           VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN
Sbjct: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540

Query: 541 AALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAVA 600
           AALNRKSTMSDETREALPKALQKLFQTHK     LICQGLRDLAVSQSTLPKADARMAVA
Sbjct: 541 AALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA 600

Query: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660
           AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK
Sbjct: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660

Query: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR
Sbjct: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 705

[Close]

BLAST of Carg05770 vs. NCBI nr
Match: XP_023552355.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552356.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552357.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023552358.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1353.6 bits (3502), Expect = 0.0e+00
Identity = 693/705 (98.30%), Postives = 696/705 (98.72%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQP TKLEPE PVSKPEVA 
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPTTKLEPEPPVSKPEVAE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120
           PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120

Query: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180
           VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE
Sbjct: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180

Query: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240
           SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN
Sbjct: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240

Query: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300
           SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE
Sbjct: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300

Query: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360
           SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI
Sbjct: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360

Query: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420
           KKLLTEGPPI+RFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA
Sbjct: 361 KKLLTEGPPIRRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420

Query: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480
           RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY
Sbjct: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480

Query: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540
           VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN
Sbjct: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540

Query: 541 AALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAVA 600
           AALNR+STMSDETREALPKALQKLFQTHK     LICQGLRDLAVSQSTLPKADARMAVA
Sbjct: 541 AALNRRSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA 600

Query: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660
           AAYGVDAPPDELKRIICQVATEIHGLYVLTSS EHPEYDPLRKVVIQLLRGRGPKAVLKK
Sbjct: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSSEHPEYDPLRKVVIQLLRGRGPKAVLKK 660

Query: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           ADVLEASKRELGRAINSNEYSKVMNEICVSHGS+WALKSGDGNSR
Sbjct: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSSWALKSGDGNSR 705

[Close]

BLAST of Carg05770 vs. NCBI nr
Match: XP_022985072.1 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima] >XP_022985073.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima] >XP_022985074.1 DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 1350.5 bits (3494), Expect = 0.0e+00
Identity = 692/706 (98.02%), Postives = 697/706 (98.73%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPK+EVVPKPEPQQPPTKLEPETPV +PEVA 
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKTEVVPKPEPQQPPTKLEPETPVPEPEVAE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMV-EDDDPMEEDASED 120
           PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMV +DDDPMEEDASED
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVDDDDDPMEEDASED 120

Query: 121 MVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDI 180
           MVVREIDVLFTPS+DINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDI
Sbjct: 121 MVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDI 180

Query: 181 ESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHL 240
           ESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHL
Sbjct: 181 ESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHL 240

Query: 241 NSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGL 300
           NSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKT DEECWIPLKYYGL
Sbjct: 241 NSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTGDEECWIPLKYYGL 300

Query: 301 ESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEER 360
           ESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEER
Sbjct: 301 ESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEER 360

Query: 361 IKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRC 420
           IKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRC
Sbjct: 361 IKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRC 420

Query: 421 ARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNN 480
           ARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNN
Sbjct: 421 ARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNN 480

Query: 481 YVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSS 540
           YVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSS
Sbjct: 481 YVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSS 540

Query: 541 NAALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAV 600
           NAALNRKSTMSDETREALPKALQKLFQTHK     LICQGLRDLAVSQSTLPKADARMAV
Sbjct: 541 NAALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAV 600

Query: 601 AAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK 660
           AAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK
Sbjct: 601 AAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK 660

Query: 661 KADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           KADVLEASKRELGRAINSNEYSKVMNEICVSHGS+WALKSGDGNSR
Sbjct: 661 KADVLEASKRELGRAINSNEYSKVMNEICVSHGSSWALKSGDGNSR 706

[Close]

BLAST of Carg05770 vs. NCBI nr
Match: KAG6577248.1 (DNA-directed RNA polymerase III subunit RPC5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1316.2 bits (3405), Expect = 0.0e+00
Identity = 675/685 (98.54%), Postives = 676/685 (98.69%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEV  
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVTE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120
           PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120

Query: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180
           VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVD E
Sbjct: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDNE 180

Query: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240
           SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN
Sbjct: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240

Query: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300
           SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE
Sbjct: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300

Query: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360
           SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI
Sbjct: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360

Query: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420
           KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA
Sbjct: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420

Query: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480
           RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY
Sbjct: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480

Query: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540
           VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKP+KQVIHDKASTKSSN
Sbjct: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPQKQVIHDKASTKSSN 540

Query: 541 AALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAVA 600
           AALNRKSTMSDETREALPKALQKLFQTHK     LICQGLRDLAVSQSTLPKADARMAVA
Sbjct: 541 AALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA 600

Query: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660
           AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK
Sbjct: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660

Query: 661 ADVLEASKRELGRAINSNEYSKVMN 681
           ADVLEASKRELGRAINSNEYSKV N
Sbjct: 661 ADVLEASKRELGRAINSNEYSKVPN 685

[Close]

BLAST of Carg05770 vs. ExPASy Swiss-Prot
Match: Q9CZT4 (DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 4.9e-30
Identity = 133/490 (27.14%), Postives = 213/490 (43.47%), Query Frame = 0


Query: 118 EDMVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNV 177
           +D V++EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +
Sbjct: 6   DDPVIQEIDVYLAKS--LAEKLYLFQYPVRPASMTYDDIPHL-SAKIKPKQQKVELEMAI 65

Query: 178 DIESNNY------------------DSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGD 237
           D  + NY                  ++   ++  M KQT  SS        YA  L    
Sbjct: 66  DTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYAAALYRQG 125

Query: 238 KLHLNPVHTVVQLRPSFEHLNSGGPK---RKINVRADPNVKSEEHTDVN------SAGGS 297
           +LHL P+H ++QLRPSF +L+    K   R+    A  + + E   DV       S   S
Sbjct: 126 ELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITVRFSRPES 185

Query: 298 RKQKKQTGPSTE--PKTVDEECWIPLKYYGLESDLSTRHLRSMVAQKNSPM---QFSMSP 357
            + +++   S E   K   EE W+ L YYG+    S    + ++ Q +S +   +   SP
Sbjct: 186 EQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVENTELVKSP 245

Query: 358 HDYVDSLC-PGASSSRNKPKGPSKRF----LLSLSLEERIKKLLTEGPPIQRFSALKHYA 417
            +Y+  L  P     ++KP  PS       L +L L ++IK L+     +   + +    
Sbjct: 246 SEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFANLMSLLG 305

Query: 418 PDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSG---------RC-ARDFVLSLFSK 477
           P  +    +  +Q+ A  VQG WV KS  L P+D S           C  RDFV+  F++
Sbjct: 306 PSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDFVMWKFTQ 365

Query: 478 NP-VVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNYVDIVQKQEK 537
           +  VV      V K   + VK FL    V R   K W F    D  F+  + D+VQ+Q  
Sbjct: 366 SRWVVRKEVAAVTKLCAEDVKDFLEHMAVVR-INKGWEFLLPYDLEFIKKHPDVVQRQHM 425

Query: 538 VWRSVE---EGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSNAALNRK 557
           +W  ++   E + N  + ++       +APV    +   E++V   K   + ++A L R+
Sbjct: 426 LWSGIQAKLEKVYNLVKETMPKKPDGQSAPVG---LVSGEQRVQTAKTKAQQNHAFLERE 485

[Close]

BLAST of Carg05770 vs. ExPASy Swiss-Prot
Match: Q9NVU0 (DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-29
Identity = 128/477 (26.83%), Postives = 207/477 (43.40%), Query Frame = 0


Query: 118 EDMVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNV 177
           +D VV+EIDV    S  +  KLY+ QYP+RP    Y+        ++KP   +VE+++ +
Sbjct: 6   DDPVVQEIDVYLAKS--LAEKLYLFQYPVRPASMTYDDIPHL-SAKIKPKQQKVELEMAI 65

Query: 178 DIESNNY------------------DSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGD 237
           D  + NY                  ++   ++  M KQT  SS      + YA  L    
Sbjct: 66  DTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYAAALYRQG 125

Query: 238 KLHLNPVHTVVQLRPSFEHLNSGGPK---RKINVRADPNVKSEEHTDVN------SAGGS 297
           +LHL P+H ++QLRPSF +L+    K   R+    A  + + E   DV       S   S
Sbjct: 126 ELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITVRFSRPES 185

Query: 298 RKQKKQTGPSTE--PKTVDEECWIPLKYYGLESDLSTRHLRSMVAQKNSPM---QFSMSP 357
            + +++   S E   K   EE W+ L YYGL    S    + ++   +S +   +   SP
Sbjct: 186 EQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVENTELVKSP 245

Query: 358 HDYVDSLC-PGASSSRNKPKGPSKRF----LLSLSLEERIKKLLTEGPPIQRFSALKHYA 417
            +Y+  L  P     ++KP  PS       L +L L ++IK L+     +   + +    
Sbjct: 246 SEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFANLMSLLG 305

Query: 418 PDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSG---------RC-ARDFVLSLFSK 477
           P  +    +  +Q+ A  VQG WV KS  L P+D S           C  RDFV+  F++
Sbjct: 306 PSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDFVMWKFTQ 365

Query: 478 NP-VVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNYVDIVQKQEK 537
           +  VV      V K   + VK FL    V R   K W F    D  F+  + D+VQ+Q  
Sbjct: 366 SRWVVRKEVATVTKLCAEDVKDFLEHMAVVR-INKGWEFILPYDGEFIKKHPDVVQRQHM 425

Query: 538 VWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSNAALNRK 547
           +W  ++  +   +    + M     A   P  +   ++++   K   + ++A L R+
Sbjct: 426 LWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALLERE 478

[Close]

BLAST of Carg05770 vs. ExPASy Swiss-Prot
Match: O74883 (DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc37 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-09
Identity = 63/207 (30.43%), Postives = 96/207 (46.38%), Query Frame = 0


Query: 101 EEETMVEDDDPMEEDASEDMVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPY-EFEGRC 160
           E++ M E     +E   +D VVR   V F+P   +   L + Q+PLRP+ R Y +  G  
Sbjct: 5   EDQAMEEAKLRNDETEEQDPVVRTYPVFFSPG--LRNNLLLNQFPLRPKNRTYSDANGEA 64

Query: 161 D-EVRVKPTTGEVEVDLNVDIESNNYDSKA----DANLQMKKQTLKSSWQPPMATSYAVG 220
             +VRVKP TG +EVD+ +       + KA    +    ++ QTL    Q P  T+  VG
Sbjct: 65  PIDVRVKPKTGWMEVDVPIPTTKYYNEDKAMKYGNGKKPIQTQTLSGRLQKP-RTNLMVG 124

Query: 221 LLMGDKLHLNPVHTVVQLRPSFEHLNSGGPKRKINVRADP-NVKSEEHTDVNSAGGSRKQ 280
           L+   + H+ P+  + QLRPS +H+N     +K+   A P N  S   T        +  
Sbjct: 125 LIRDGQFHIVPLRGLTQLRPSMKHVNE--YTQKLKAAAGPSNSSSGTSTPRGPIRAVQVT 184

Query: 281 KKQTGPSTEPKT------VDEECWIPL 295
            KQ   + +  T       +EE W+ L
Sbjct: 185 AKQNTEAPKVSTTHIVRATEEEEWVEL 206

[Close]

BLAST of Carg05770 vs. ExPASy TrEMBL
Match: A0A6J1EMD6 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435914 PE=4 SV=1)

HSP 1 Score: 1358.2 bits (3514), Expect = 0.0e+00
Identity = 696/705 (98.72%), Postives = 697/705 (98.87%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVA 
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120
           PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120

Query: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180
           VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE
Sbjct: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180

Query: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240
           SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN
Sbjct: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240

Query: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300
           SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKT DEE WIPLKYYGLE
Sbjct: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTGDEESWIPLKYYGLE 300

Query: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360
           SDLSTRHLRSMVA+KNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI
Sbjct: 301 SDLSTRHLRSMVAEKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360

Query: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420
           KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA
Sbjct: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420

Query: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480
           RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY
Sbjct: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480

Query: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540
           VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN
Sbjct: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540

Query: 541 AALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAVA 600
           AALNRKSTMSDETREALPKALQKLFQTHK     LICQGLRDLAVSQSTLPKADARMAVA
Sbjct: 541 AALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA 600

Query: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660
           AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK
Sbjct: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660

Query: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR
Sbjct: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 705

[Close]

BLAST of Carg05770 vs. ExPASy TrEMBL
Match: A0A6J1JCH8 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483153 PE=4 SV=1)

HSP 1 Score: 1350.5 bits (3494), Expect = 0.0e+00
Identity = 692/706 (98.02%), Postives = 697/706 (98.73%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPK+EVVPKPEPQQPPTKLEPETPV +PEVA 
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKTEVVPKPEPQQPPTKLEPETPVPEPEVAE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMV-EDDDPMEEDASED 120
           PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMV +DDDPMEEDASED
Sbjct: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVDDDDDPMEEDASED 120

Query: 121 MVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDI 180
           MVVREIDVLFTPS+DINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDI
Sbjct: 121 MVVREIDVLFTPSLDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDI 180

Query: 181 ESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHL 240
           ESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHL
Sbjct: 181 ESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHL 240

Query: 241 NSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGL 300
           NSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKT DEECWIPLKYYGL
Sbjct: 241 NSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTGDEECWIPLKYYGL 300

Query: 301 ESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEER 360
           ESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEER
Sbjct: 301 ESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEER 360

Query: 361 IKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRC 420
           IKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRC
Sbjct: 361 IKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRC 420

Query: 421 ARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNN 480
           ARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNN
Sbjct: 421 ARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNN 480

Query: 481 YVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSS 540
           YVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSS
Sbjct: 481 YVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSS 540

Query: 541 NAALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAV 600
           NAALNRKSTMSDETREALPKALQKLFQTHK     LICQGLRDLAVSQSTLPKADARMAV
Sbjct: 541 NAALNRKSTMSDETREALPKALQKLFQTHKVCSFQLICQGLRDLAVSQSTLPKADARMAV 600

Query: 601 AAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK 660
           AAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK
Sbjct: 601 AAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLK 660

Query: 661 KADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           KADVLEASKRELGRAINSNEYSKVMNEICVSHGS+WALKSGDGNSR
Sbjct: 661 KADVLEASKRELGRAINSNEYSKVMNEICVSHGSSWALKSGDGNSR 706

[Close]

BLAST of Carg05770 vs. ExPASy TrEMBL
Match: A0A6J1C4C6 (DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=LOC111008259 PE=4 SV=1)

HSP 1 Score: 1176.4 bits (3042), Expect = 0.0e+00
Identity = 606/707 (85.71%), Postives = 648/707 (91.65%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSK--PEV 60
           MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTK EPE P SK  PE+
Sbjct: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKPEPEPPASKPEPEL 60

Query: 61  AGPDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASE 120
             PDA  GEKKEEGEEVEVKPKVE+SLPNGVDKMDVETK E EEETMV  DDPMEED SE
Sbjct: 61  VEPDAATGEKKEEGEEVEVKPKVESSLPNGVDKMDVETKSEAEEETMV--DDPMEEDVSE 120

Query: 121 DMVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVD 180
           DMVVREIDVLFTPS DIN+KLYVLQYPLRP WRPYEFEGRC+EVRVKP++GEVEVDLNVD
Sbjct: 121 DMVVREIDVLFTPSADINSKLYVLQYPLRPCWRPYEFEGRCEEVRVKPSSGEVEVDLNVD 180

Query: 181 IESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEH 240
           IESNNYDSKA+ +LQMKKQTL SSWQPP+AT+YAVGLLMG+KLHLNP+H VVQLRPS EH
Sbjct: 181 IESNNYDSKAEGSLQMKKQTLTSSWQPPLATTYAVGLLMGNKLHLNPIHAVVQLRPSIEH 240

Query: 241 LNSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYG 300
           LNSGGPKRK  VR DP+VK EE  DVNSA  SRKQKKQTG STE KT D+ECWIPLKYYG
Sbjct: 241 LNSGGPKRKNIVRGDPDVKPEESIDVNSAVASRKQKKQTGSSTELKTGDDECWIPLKYYG 300

Query: 301 LESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEE 360
           LESDLSTR+ RSMVAQK+SP+QFSMSP DY++SLCPGA +S  KP+GPSKR+LLSLSL+E
Sbjct: 301 LESDLSTRYQRSMVAQKSSPIQFSMSPDDYMNSLCPGACTSSIKPRGPSKRYLLSLSLDE 360

Query: 361 RIKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGR 420
           RIKKLL+EGPP+QRFSALKHYAPDYE +EFIEALQQYAQ VQGLWVAKSSFLLPQDG GR
Sbjct: 361 RIKKLLSEGPPVQRFSALKHYAPDYEAEEFIEALQQYAQLVQGLWVAKSSFLLPQDGGGR 420

Query: 421 CARDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLN 480
           CARDFVL LFSKNP++SSSQINVPKSLRDK KHFLN F VERPAFKDW+F+EKTDR FLN
Sbjct: 421 CARDFVLCLFSKNPLISSSQINVPKSLRDKAKHFLNLFAVERPAFKDWKFREKTDRSFLN 480

Query: 481 NYVDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKS 540
           NY+DIVQKQEK+WRSVEEGITNSFRGSVK+ SHANAA  KP++VPK EKQV  DKA+TKS
Sbjct: 481 NYLDIVQKQEKIWRSVEEGITNSFRGSVKSGSHANAATGKPDIVPKTEKQVSFDKATTKS 540

Query: 541 SNAALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMA 600
           S+A LNRKSTMSDETREALPKALQKLFQ HK     LICQGLRDLAVSQSTLPKADARMA
Sbjct: 541 SSAPLNRKSTMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMA 600

Query: 601 VAAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVL 660
           VAAAYGVDAPPDELK+II QVATEIHGLYV+TSSPEHPEYDPLRKV+IQLLRGRGPKAVL
Sbjct: 601 VAAAYGVDAPPDELKKIIGQVATEIHGLYVMTSSPEHPEYDPLRKVIIQLLRGRGPKAVL 660

Query: 661 KKADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           KKADVLEASKRELGRAINSNEY+KVMNEICVSHGS+W LKSGDGNSR
Sbjct: 661 KKADVLEASKRELGRAINSNEYTKVMNEICVSHGSSWVLKSGDGNSR 705

[Close]

BLAST of Carg05770 vs. ExPASy TrEMBL
Match: A0A1S3BX09 (DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494365 PE=4 SV=1)

HSP 1 Score: 1169.8 bits (3025), Expect = 0.0e+00
Identity = 603/705 (85.53%), Postives = 642/705 (91.06%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLD LDE SQVPSRTSRFAPK+SKFKPKPKSEVVPKPEPQQPPTKLEP+ PVSKPEV  
Sbjct: 1   MDLDGLDERSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPPTKLEPQPPVSKPEVVE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120
           PDA IGEKKE+GEEVEVKPKVE+SLPNGV KMDVETK EVEE+TMV DDDPMEEDASEDM
Sbjct: 61  PDAQIGEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDTMV-DDDPMEEDASEDM 120

Query: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180
           VVREIDVLFTPSVD N+KLYVLQYPLRPRWRPYEFEGRCDEVRVKP+TGEVE+DLNVDIE
Sbjct: 121 VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEIDLNVDIE 180

Query: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240
           SNNYDSKAD   QMKKQTL SSWQPP+ATSYAVGLLMG+KLHLNPVH VVQLRPSFEHLN
Sbjct: 181 SNNYDSKADDTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 240

Query: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300
           SGGPKRK N+RAD +VKSEEH DVNSAG SRKQKKQTGPSTE KT DEECWIPLKYYGLE
Sbjct: 241 SGGPKRKNNIRADSDVKSEEHVDVNSAGASRKQKKQTGPSTELKTRDEECWIPLKYYGLE 300

Query: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360
           SDLSTRHL+SMV+Q  SPMQFSMSPHDY+DSLCPG S+S NKPKGPSK++LLSLSLEERI
Sbjct: 301 SDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSSNKPKGPSKKYLLSLSLEERI 360

Query: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420
           KKLLTEGPP+QRFSALKHYAPDYE +EF+EALQQYAQ VQGLWV KS FL+PQDGSGRCA
Sbjct: 361 KKLLTEGPPVQRFSALKHYAPDYEAEEFLEALQQYAQLVQGLWVPKSLFLIPQDGSGRCA 420

Query: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480
           RDFVL LFSKNPVVSSSQINVPKSLRD+VKHFLN FGVERPAFKDW+FKEKTD  FL+N+
Sbjct: 421 RDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDHSFLSNH 480

Query: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540
           V IVQKQE+ W ++E+ +   F  S+K+  H  A   KP++VPKPEKQV  DK +TKSSN
Sbjct: 481 VKIVQKQEEGWNAMEKAL--PFLRSMKSGPHTTATTGKPDVVPKPEKQVSCDKTTTKSSN 540

Query: 541 AALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAVA 600
           A LNRK  MSDETREALPKALQKLFQ HK     LICQGLRDLAVSQSTLPKADARMAVA
Sbjct: 541 APLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA 600

Query: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660
           AAYGVDAPP+ELK+II QVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK
Sbjct: 601 AAYGVDAPPEELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660

Query: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           ADVLEASKRELGRAINSNEYSKVMNEICVSHGS+W LKSGDGNSR
Sbjct: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSSWTLKSGDGNSR 702

[Close]

BLAST of Carg05770 vs. ExPASy TrEMBL
Match: A0A0A0KUN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1)

HSP 1 Score: 1166.8 bits (3017), Expect = 0.0e+00
Identity = 601/705 (85.25%), Postives = 642/705 (91.06%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAPKTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVAG 60
           MDLD LDE SQVPSRTSRFAPK+SKFKPKPKSEVVPKPEPQQP TKLEP+ P+SKPEV  
Sbjct: 1   MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 61  PDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETMVEDDDPMEEDASEDM 120
           PDA + EKKE+GEEVEVKPKVE+SLPNGV KMDVETK EVEE+ MV DDDP+EEDASEDM
Sbjct: 61  PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVEEDAMV-DDDPIEEDASEDM 120

Query: 121 VVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTTGEVEVDLNVDIE 180
           VVREIDVLFTPSVD N+KLYVLQYPLRPRWRPYEFEGRCDEVRVKP+TGEVEVDLNVDIE
Sbjct: 121 VVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVDIE 180

Query: 181 SNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHTVVQLRPSFEHLN 240
           SNNYD+KAD   QMKKQTL SSWQPP+ATSYAVGLLMG+KLHLNPVH VVQLRPSFEHLN
Sbjct: 181 SNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFEHLN 240

Query: 241 SGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQTGPSTEPKTVDEECWIPLKYYGLE 300
           SGGPKRK NVRAD +VKSEEH DVNSAG SRKQKKQTGPSTE KT DEECWIPLKYYGLE
Sbjct: 241 SGGPKRKNNVRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEVKTRDEECWIPLKYYGLE 300

Query: 301 SDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPSKRFLLSLSLEERI 360
           SDLSTRHL+SMV+Q  SPMQFSMSPHDY+DSLCPG S+S NKPKGPSK++LLSLSLEERI
Sbjct: 301 SDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPGTSTSGNKPKGPSKKYLLSLSLEERI 360

Query: 361 KKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKSSFLLPQDGSGRCA 420
           KKLLTEGPP+QRFSALKHYAPDYE +EFIE LQQYAQ VQGLWV KS FL+PQDGSGRCA
Sbjct: 361 KKLLTEGPPVQRFSALKHYAPDYETEEFIETLQQYAQLVQGLWVPKSLFLIPQDGSGRCA 420

Query: 421 RDFVLSLFSKNPVVSSSQINVPKSLRDKVKHFLNWFGVERPAFKDWRFKEKTDRLFLNNY 480
           RDFVL LFSKNPVVSSSQINVPKSLRD+VKHFLN FGVERPAFKDW+FKEKTDRLFL+N+
Sbjct: 421 RDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFGVERPAFKDWKFKEKTDRLFLSNH 480

Query: 481 VDIVQKQEKVWRSVEEGITNSFRGSVKNMSHANAAPVKPEMVPKPEKQVIHDKASTKSSN 540
           V I +KQE++W +VE+G T  F  S+K++ HANAA  KP +VPK EKQV  D+ +TKSSN
Sbjct: 481 VRIAEKQEELWNNVEKGFT--FLRSIKSVHHANAATGKPGVVPKLEKQVSSDQTTTKSSN 540

Query: 541 AALNRKSTMSDETREALPKALQKLFQTHK-----LICQGLRDLAVSQSTLPKADARMAVA 600
           A LNRK  MSDETREALPKALQKLFQ HK     LICQGLRDLAVSQSTLPKADARMAVA
Sbjct: 541 APLNRKGAMSDETREALPKALQKLFQNHKVCSFQLICQGLRDLAVSQSTLPKADARMAVA 600

Query: 601 AAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660
           AAYGVDAPPDELK+II QVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK
Sbjct: 601 AAYGVDAPPDELKKIISQVATEIHGLYVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKK 660

Query: 661 ADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALKSGDGNSR 701
           ADVLEASK ELGRAINSNEYSKVMNEIC+SHGS+W LKSGDGNSR
Sbjct: 661 ADVLEASKHELGRAINSNEYSKVMNEICISHGSSWTLKSGDGNSR 702

[Close]

BLAST of Carg05770 vs. TAIR 10
Match: AT5G49530.1 (SIN-like family protein )

HSP 1 Score: 531.6 bits (1368), Expect = 9.8e-151
Identity = 323/716 (45.11%), Postives = 437/716 (61.03%), Query Frame = 0


Query: 1   MDLDDLDEPSQVPSRTSRFAP-KTSKFKPKPKSEVVPKPEPQQPPTKLEPETPVSKPEVA 60
           MD DD D+P +V ++T RFAP +  K KPKPK E     +P QPP + + E+ VSK E  
Sbjct: 1   MDFDDDDKPKEV-TKTRRFAPGRAGKSKPKPKPEPT-ADKPVQPPPQSQTES-VSKTE-- 60

Query: 61  GPDALIGEKKEEGEEVEVKPKVEASLPNGVDKMDVETKLEVEEETM----VEDDDPM--- 120
                      + +   V  KVE  + NG  KM++++K++ E E M    +E+D  +   
Sbjct: 61  ----------HDVDAKFVGTKVETEVCNGSVKMEIDSKVDKEPEIMETELMEEDQQLPLQ 120

Query: 121 ----EEDASEDMVVREIDVLFTPSVDINTKLYVLQYPLRPRWRPYEFEGRCDEVRVKPTT 180
               EE+  +D+VVREIDV F PS+D NT+LYVLQYPLRP WRPYE + RC+EVRV P+T
Sbjct: 121 EEKEEEEEEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPST 180

Query: 181 GEVEVDLNVDIESNNYDSKADANLQMKKQTLKSSWQPPMATSYAVGLLMGDKLHLNPVHT 240
            +VE+DL++D+ S NYDS  +  L M KQTLK++W+ P    YAVG+L GDKLHLNPVH 
Sbjct: 181 SQVEIDLSMDVHSKNYDS--NFGLNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHA 240

Query: 241 VVQLRPSFEHLNSGGPKRKINVRADPNVKSEEHTDVNSAGGSRKQKKQT-GPSTEPKTVD 300
           V QLRPS + L+S           D   K EE T+  S G S+KQ K     ST+ K ++
Sbjct: 241 VAQLRPSMQSLSS-----------DKKKKQEESTE-ESVGTSKKQNKGVQQASTDQKPIN 300

Query: 301 EECWIPLKYYGLESDLSTRHLRSMVAQKNSPMQFSMSPHDYVDSLCPGASSSRNKPKGPS 360
           EE W+ LKY+GL+S+  +R+L  M+A  NS + F+MSP  Y++ LC G SS  ++ K   
Sbjct: 301 EETWVSLKYHGLQSEYCSRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETL 360

Query: 361 KRFLLSLSLEERIKKLLTEGPPIQRFSALKHYAPDYEPDEFIEALQQYAQSVQGLWVAKS 420
           KR LLSL L+ER++KLL EG P+ R+S LKHYAP++  ++F+ ALQ+Y + VQGLW  K+
Sbjct: 361 KRVLLSLPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKT 420

Query: 421 SFLLPQDGSGRCARDFVLSLFSKNPVVSSSQINVP-KSLRDKVKHFLNWFGVERPAFKDW 480
             LL  DG    ARD+VLSLFS+N  +  S++      ++  ++  L  F  ER   KDW
Sbjct: 421 R-LLKLDGPVEAARDYVLSLFSQNTTIKYSEVEATGDKMKPLMERMLTEFAKERHVLKDW 480

Query: 481 RFKEKTDRLFLNNYVDIVQKQEKVWRSVEEGITNSFR---GSVKNMSHANAAPVKPEMVP 540
           +FKE TD  F+ +Y +IV++Q+  W    E + +      G  +     N       +  
Sbjct: 481 KFKEPTDVSFIKSYPEIVKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTV 540

Query: 541 KPE-KQVIHDKASTKSSNAALNRKSTMSDETREALPKALQKLFQTHKL-----ICQGLRD 600
           KPE    + DK  +  +         M +E ++ALPKAL+K+FQTHK+     ICQGLRD
Sbjct: 541 KPEVPTTLSDKGGSSKNTIHRVVTQEMPEELKKALPKALKKVFQTHKVCRYETICQGLRD 600

Query: 601 LAVSQSTLPKADARMAVAAAYGVDAPPDELKRIICQVATEIHGLYVLTSSPEHPEYDPLR 660
           LAVS S  PKAD+ MAV  A  VDA   EL+ +I  VAT IHG YV  SSP+HPEYD LR
Sbjct: 601 LAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDHPEYDSLR 660

Query: 661 KVVIQLLRGRGPKAVLKKADVLEASKRELGRAINSNEYSKVMNEICVSHGSAWALK 694
           +VVI LL G  P   L KA+V  A + +L R I +NEY KVM+EIC ++ S W L+
Sbjct: 661 EVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKVMHEICETNSSGWVLQ 686

The following BLAST results are available for this feature:

BLAST of Carg05770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015338.1	0.0e+00	100.00	DNA-directed RNA polymerase III subunit RPC5 [Cucurbita argyrosperma subsp. argy...	[more]
XP_022929283.1	0.0e+00	98.72	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita moschata] >XP...	[more]
XP_023552355.1	0.0e+00	98.30	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita pepo subsp. p...	[more]
XP_022985072.1	0.0e+00	98.02	DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Cucurbita maxima] >XP_0...	[more]
KAG6577248.1	0.0e+00	98.54	DNA-directed RNA polymerase III subunit RPC5, partial [Cucurbita argyrosperma su...	[more]

BLAST of Carg05770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CZT4	4.9e-30	27.14	DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e ...	[more]
Q9NVU0	3.2e-29	26.83	DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E P...	[more]
O74883	6.2e-09	30.43	DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of Carg05770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMD6	0.0e+00	98.72	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1JCH8	0.0e+00	98.02	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1C4C6	0.0e+00	85.71	DNA-directed RNA polymerase III subunit RPC5 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3BX09	0.0e+00	85.53	DNA-directed RNA polymerase III subunit RPC5 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
A0A0A0KUN5	0.0e+00	85.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038800 PE=4 SV=1	[more]

BLAST of Carg05770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49530.1	9.8e-151	45.11	SIN-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PFAM	PF04801	Sin_N	coord: 118..498 e-value: 7.4E-89 score: 298.9
IPR006886	DNA-directed RNA polymerase III subunit Rpc5	PANTHER	PTHR12069	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	coord: 112..491
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 530..551

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05770-RA	Carg05770-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity