|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGTTAGTTGGAATGTTCATCAAGCGGAAAAATAATACGACGTCGACGTCGACATCAGTGTTGTTACTTAATGAAATGAGCAGCAGGAAAGTTGAAGAACTCGATCGAGAGTCGAATGCTATGCCGCTCATCGTAGATGAAGAATTCTGGTTGTGAAAATAAATGTACCTGAGCTTATGATCATAAGATTTCAAAGTTTTGGATGGATAAGGTGTAGAATTAATTAATGTGGTGAAAGAAGTTTTAGCAGAAATTACATATTTTGAGGTCAAATCTGGGTGTTGCTTCTGTTGTTTAATCAAGAAGCAGGCCAGGTTATACAACGTTTGTATGGCTTTTTTATGCGGCAACAATGCATTTTTGAGTTTCATATTTCTTTTTTTTTTTTTTTTTTCTATCTTAGGGAGATCGCAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTATCGTCTACTGA mRNA sequence ATGGAGTTAGTTGGAATGTTCATCAAGCGGAAAAATAATACGACGTCGACGTCGACATCAGTGTTGTTACTTAATGAAATGAGCAGCAGGAAAGTTGAAGAACTCGATCGAGAGTCGAATGCTATGCCGCTCATCGTAGATGAAGAATTCTGGGAGATCGCAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTATCGTCTACTGA Coding sequence (CDS) ATGGAGTTAGTTGGAATGTTCATCAAGCGGAAAAATAATACGACGTCGACGTCGACATCAGTGTTGTTACTTAATGAAATGAGCAGCAGGAAAGTTGAAGAACTCGATCGAGAGTCGAATGCTATGCCGCTCATCGTAGATGAAGAATTCTGGGAGATCGCAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTATCGTCTACTGA Protein sequence MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRLRTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIIVY
Homology
BLAST of Carg05673 vs. NCBI nr
Match: KAG7015242.1 (hypothetical protein SDJN02_22876, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 Query: 1 MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRL 60 MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRL Sbjct: 1 MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRL 60
Query: 61 RTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 120 RTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS Sbjct: 61 RTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 120
Query: 121 LSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 180 LSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS Sbjct: 121 LSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 180
Query: 181 LSDIVVYEHYLLGRSLSDIIVY 203 LSDIVVYEHYLLGRSLSDIIVY Sbjct: 181 LSDIVVYEHYLLGRSLSDIIVY 202
BLAST of Carg05673 vs. NCBI nr
Match: VDI79748.1 (Hypothetical predicted protein [Mytilus galloprovincialis]) HSP 1 Score: 64.3 bits (155), Expect = 1.4e-06 Identity = 36/137 (26.28%), Postives = 83/137 (60.58%), Query Frame = 0 Query: 63 LSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLS 122 ++V ++TI ++ ++T+ + S D+V Y+ + +S++D++ Y+ + S+S Sbjct: 32 VTVDDLTIILSMSDMVTYDDVTVTIYMSRHDMVTYDDVTITKSMTDMLTYDDVTITISMS 91
Query: 123 DIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLS 182 D+V Y+++ + S+SD+V Y+ + S++D++ Y+ + S+SD+V Y+ + S++ Sbjct: 92 DMVTYDNFTITISMSDMVTYDDVTITISMTDMLTYDDVTITISMSDMVTYDDITITISMA 151
Query: 183 DIVVYEHYLLGRSLSDI 200 D+V Y+ + S+SD+ Sbjct: 152 DMVTYDDITI--SMSDM 166
BLAST of Carg05673 vs. NCBI nr
Match: GCB85283.1 (hypothetical protein [Scyliorhinus torazame]) HSP 1 Score: 60.1 bits (144), Expect = 2.6e-05 Identity = 34/114 (29.82%), Postives = 66/114 (57.89%), Query Frame = 0 Query: 90 SLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGR 149 +L+D+ + +H L +LSD+ + +H L +LSD + +H L+ +LSD + +H L+ Sbjct: 40 TLTDLTLIDHTLSDHTLSDLTLSDHTLTDHTLSDHTLIDHTLIDHTLSDHTLSDHTLIDH 99
Query: 150 SLSDIVVYEH-----YLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSD 199 +L D + +H L+ +L D+ + +H L+ +LSD + +H L+ +L+D Sbjct: 100 TLIDHTLSDHTLSDLTLIDHTLIDLTLIDHTLIDHTLSDHTLIDHTLIDHTLTD 153
BLAST of Carg05673 vs. ExPASy TrEMBL
Match: A0A401QIT6 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0025935 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05 Identity = 34/114 (29.82%), Postives = 66/114 (57.89%), Query Frame = 0 Query: 90 SLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGR 149 +L+D+ + +H L +LSD+ + +H L +LSD + +H L+ +LSD + +H L+ Sbjct: 40 TLTDLTLIDHTLSDHTLSDLTLSDHTLTDHTLSDHTLIDHTLIDHTLSDHTLSDHTLIDH 99
Query: 150 SLSDIVVYEH-----YLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSD 199 +L D + +H L+ +L D+ + +H L+ +LSD + +H L+ +L+D Sbjct: 100 TLIDHTLSDHTLSDLTLIDHTLIDLTLIDHTLIDHTLSDHTLIDHTLIDHTLTD 153
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7015242.1 | 1.7e-102 | 100.00 | hypothetical protein SDJN02_22876, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
VDI79748.1 | 1.4e-06 | 26.28 | Hypothetical predicted protein [Mytilus galloprovincialis] | [more] |
GCB85283.1 | 2.6e-05 | 29.82 | hypothetical protein [Scyliorhinus torazame] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A401QIT6 | 1.3e-05 | 29.82 | Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00... | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | SUPERFAMILY | 141571 | Pentapeptide repeat-like | coord: 50..198 |
Relationships
The following mRNA feature(s) are a part of this gene:
|