Carg05673 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05673
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr16: 3703340 .. 3704318 (+)
RNA-Seq Expression	Carg05673
Synteny	Carg05673

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTAGTTGGAATGTTCATCAAGCGGAAAAATAATACGACGTCGACGTCGACATCAGTGTTGTTACTTAATGAAATGAGCAGCAGGAAAGTTGAAGAACTCGATCGAGAGTCGAATGCTATGCCGCTCATCGTAGATGAAGAATTCTGGTTGTGAAAATAAATGTACCTGAGCTTATGATCATAAGATTTCAAAGTTTTGGATGGATAAGGTGTAGAATTAATTAATGTGGTGAAAGAAGTTTTAGCAGAAATTACATATTTTGAGGTCAAATCTGGGTGTTGCTTCTGTTGTTTAATCAAGAAGCAGGCCAGGTTATACAACGTTTGTATGGCTTTTTTATGCGGCAACAATGCATTTTTGAGTTTCATATTTCTTTTTTTTTTTTTTTTTTCTATCTTAGGGAGATCGCAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTATCGTCTACTGA

mRNA sequence

ATGGAGTTAGTTGGAATGTTCATCAAGCGGAAAAATAATACGACGTCGACGTCGACATCAGTGTTGTTACTTAATGAAATGAGCAGCAGGAAAGTTGAAGAACTCGATCGAGAGTCGAATGCTATGCCGCTCATCGTAGATGAAGAATTCTGGGAGATCGCAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTATCGTCTACTGA

Coding sequence (CDS)

ATGGAGTTAGTTGGAATGTTCATCAAGCGGAAAAATAATACGACGTCGACGTCGACATCAGTGTTGTTACTTAATGAAATGAGCAGCAGGAAAGTTGAAGAACTCGATCGAGAGTCGAATGCTATGCCGCTCATCGTAGATGAAGAATTCTGGGAGATCGCAATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTGTCGTCTACGAACACTATCTGTTAGGGAGATCACTATCAGATATTATCGTCTACTGA

Protein sequence

MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRLRTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIIVY

Homology

[Close]

BLAST of Carg05673 vs. NCBI nr
Match: KAG7015242.1 (hypothetical protein SDJN02_22876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRL 60
           MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRL
Sbjct: 1   MELVGMFIKRKNNTTSTSTSVLLLNEMSSRKVEELDRESNAMPLIVDEEFWEIAIRYCRL 60

Query: 61  RTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 120
           RTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS
Sbjct: 61  RTLSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 120

Query: 121 LSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 180
           LSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS
Sbjct: 121 LSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRS 180

Query: 181 LSDIVVYEHYLLGRSLSDIIVY 203
           LSDIVVYEHYLLGRSLSDIIVY
Sbjct: 181 LSDIVVYEHYLLGRSLSDIIVY 202

[Close]

BLAST of Carg05673 vs. NCBI nr
Match: VDI79748.1 (Hypothetical predicted protein [Mytilus galloprovincialis])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-06
Identity = 36/137 (26.28%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 63  LSVREITIRYCRLRTLSVREITIRYWRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLS 122
           ++V ++TI       ++  ++T+  + S  D+V Y+   + +S++D++ Y+   +  S+S
Sbjct: 32  VTVDDLTIILSMSDMVTYDDVTVTIYMSRHDMVTYDDVTITKSMTDMLTYDDVTITISMS 91

Query: 123 DIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLS 182
           D+V Y+++ +  S+SD+V Y+   +  S++D++ Y+   +  S+SD+V Y+   +  S++
Sbjct: 92  DMVTYDNFTITISMSDMVTYDDVTITISMTDMLTYDDVTITISMSDMVTYDDITITISMA 151

Query: 183 DIVVYEHYLLGRSLSDI 200
           D+V Y+   +  S+SD+
Sbjct: 152 DMVTYDDITI--SMSDM 166

[Close]

BLAST of Carg05673 vs. NCBI nr
Match: GCB85283.1 (hypothetical protein [Scyliorhinus torazame])

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-05
Identity = 34/114 (29.82%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 90  SLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGR 149
           +L+D+ + +H L   +LSD+ + +H L   +LSD  + +H L+  +LSD  + +H L+  
Sbjct: 40  TLTDLTLIDHTLSDHTLSDLTLSDHTLTDHTLSDHTLIDHTLIDHTLSDHTLSDHTLIDH 99

Query: 150 SLSDIVVYEH-----YLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSD 199
           +L D  + +H      L+  +L D+ + +H L+  +LSD  + +H L+  +L+D
Sbjct: 100 TLIDHTLSDHTLSDLTLIDHTLIDLTLIDHTLIDHTLSDHTLIDHTLIDHTLTD 153

[Close]

BLAST of Carg05673 vs. ExPASy TrEMBL
Match: A0A401QIT6 (Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_0025935 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 34/114 (29.82%), Postives = 66/114 (57.89%), Query Frame = 0


Query: 90  SLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGR 149
           +L+D+ + +H L   +LSD+ + +H L   +LSD  + +H L+  +LSD  + +H L+  
Sbjct: 40  TLTDLTLIDHTLSDHTLSDLTLSDHTLTDHTLSDHTLIDHTLIDHTLSDHTLSDHTLIDH 99

Query: 150 SLSDIVVYEH-----YLLGRSLSDIVVYEHYLLGRSLSDIVVYEHYLLGRSLSD 199
           +L D  + +H      L+  +L D+ + +H L+  +LSD  + +H L+  +L+D
Sbjct: 100 TLIDHTLSDHTLSDLTLIDHTLIDLTLIDHTLIDHTLSDHTLIDHTLIDHTLTD 153

The following BLAST results are available for this feature:

BLAST of Carg05673 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015242.1	1.7e-102	100.00	hypothetical protein SDJN02_22876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
VDI79748.1	1.4e-06	26.28	Hypothetical predicted protein [Mytilus galloprovincialis]	[more]
GCB85283.1	2.6e-05	29.82	hypothetical protein [Scyliorhinus torazame]	[more]

BLAST of Carg05673 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A401QIT6	1.3e-05	29.82	Uncharacterized protein (Fragment) OS=Scyliorhinus torazame OX=75743 GN=scyTo_00...	[more]

BLAST of Carg05673 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 50..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05673-RA	Carg05673-RA	mRNA