Carg05628 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAACTGTCTGCGGCGGGACGGCGCGGCGGCGCGTTGGGCAGGCGAGGAGTGGGACTTTCTCGCGGCGGATGTGGAGGACGGGGGGAAAAGACAGGGATCCACGGCGGCGTCCACGGAGGTGAAAATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATGTTGAGGAGATGTCCGTACAGCAGGTTTTGGCTCAATTGATCAGTGCCGGCGAGTCTCGCCACCGTTCGTGGCGCCCGGTGTTGCAGAGCATACGGGAAGTTGACTGA ATGGGCAACTGTCTGCGGCGGGACGGCGCGGCGGCGCGTTGGGCAGGCGAGGAGTGGGACTTTCTCGCGGCGGATGTGGAGGACGGGGGGAAAAGACAGGGATCCACGGCGGCGTCCACGGAGGTGAAAATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATGTTGAGGAGATGTCCGTACAGCAGGTTTTGGCTCAATTGATCAGTGCCGGCGAGTCTCGCCACCGTTCGTGGCGCCCGGTGTTGCAGAGCATACGGGAAGTTGACTGA ATGGGCAACTGTCTGCGGCGGGACGGCGCGGCGGCGCGTTGGGCAGGCGAGGAGTGGGACTTTCTCGCGGCGGATGTGGAGGACGGGGGGAAAAGACAGGGATCCACGGCGGCGTCCACGGAGGTGAAAATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATGTTGAGGAGATGTCCGTACAGCAGGTTTTGGCTCAATTGATCAGTGCCGGCGAGTCTCGCCACCGTTCGTGGCGCCCGGTGTTGCAGAGCATACGGGAAGTTGACTGA MGNCLRRDGAAARWAGEEWDFLAADVEDGGKRQGSTAASTEVKIKITKRQLEELLGKVDVEEMSVQQVLAQLISAGESRHRSWRPVLQSIREVD Homology
BLAST of Carg05628 vs. NCBI nr
Match: KAG6607802.1 (hypothetical protein SDJN03_01144, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015198.1 hypothetical protein SDJN02_22831, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 184.9 bits (468), Expect = 3.2e-43 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
BLAST of Carg05628 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothetical protein SDJN03_14388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024918.1 hypothetical protein SDJN02_13738, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 137.9 bits (346), Expect = 4.5e-29 Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = 0
BLAST of Carg05628 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima]) HSP 1 Score: 134.4 bits (337), Expect = 5.0e-28 Identity = 74/105 (70.48%), Postives = 84/105 (80.00%), Query Frame = 0
BLAST of Carg05628 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 134.4 bits (337), Expect = 5.0e-28 Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = 0
BLAST of Carg05628 vs. NCBI nr
Match: XP_022139678.1 (uncharacterized protein LOC111010526 [Momordica charantia]) HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26 Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = 0
BLAST of Carg05628 vs. ExPASy TrEMBL
Match: A0A6J1FD17 (uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC111442898 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29 Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = 0
BLAST of Carg05628 vs. ExPASy TrEMBL
Match: A0A6J1IHJ3 (uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 2.4e-28 Identity = 74/105 (70.48%), Postives = 84/105 (80.00%), Query Frame = 0
BLAST of Carg05628 vs. ExPASy TrEMBL
Match: A0A6J1CG88 (uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010526 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 7.8e-27 Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = 0
BLAST of Carg05628 vs. ExPASy TrEMBL
Match: A0A5D2DN47 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G091100v1 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16 Identity = 56/109 (51.38%), Postives = 72/109 (66.06%), Query Frame = 0
BLAST of Carg05628 vs. ExPASy TrEMBL
Match: A0A0D2NK27 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G088300 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 3.6e-16 Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 0
BLAST of Carg05628 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. ) HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11 Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of Carg05628 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 5.2e-07 Identity = 36/129 (27.91%), Postives = 64/129 (49.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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