Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGTCGAGTCATGCAAGCAGTTCGATTTATGAATAGCGGGTCGGAAGTTCAGGCACGGGTCAGGTCGCCCTTTGCTGACGCGACGTGTGTCATCACATGGCGCCAGACATCGTCTCCTTCCATTTTCTGACATGTGGCTCGTACCATGGTCGAACATGCAACCTGTCTTGCTAATCAATTCATGCAAATTTTTATCTAATTTAAGAGTGAGTATTAATGAAAAGCCAAAAATAAAAACCATAAAATTAAGAAATATATTAAATAAATGGAAACTAATTAAATTCTAAACATTTCAACTAAATCTTATCCCAACCATCCTTACAATTTATTTATTTATTTATTATTATTTTGAAATAACAAACTTTTAATTTAATAAATTAAACATTATATTTTATAAATAGTTATATTATTTCATTTTAAATTCTTTTTAATGAAGGGTTGCTCCTTTTCATGAACAGCCATGGTACTTTGTTAGTTTCTTTTCGAACCCTATAAATGCTCATTTTTTTTTTCCATTTTTTTTTACCTTTTCGATCCTCGATCTCCGACATATTCAACCGTTCACTCGACTGCATCGGGAGACCGAGATATTCAGCCATTCACTCAACTGTGTCGGGCGGAGATCGATCGAAGTTTCAGGTCGGAATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGGCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCCTCCTCTCACGTGCGTCCTCCAATTGA
mRNA sequence
ATGTCGGGTCGAGTCATGCAAGCAGTTCGATTTATGAATAGCGGGTCGGAAGTTCAGGCACGGGTCAGGTCGCCCTTTGCTGACGCGACACCGAGATATTCAGCCATTCACTCAACTGTGTCGGGCGGAGATCGATCGAAGTTTCAGGTCGGAATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGGCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCCTCCTCTCACGTGCGTCCTCCAATTGA
Coding sequence (CDS)
ATGTCGGGTCGAGTCATGCAAGCAGTTCGATTTATGAATAGCGGGTCGGAAGTTCAGGCACGGGTCAGGTCGCCCTTTGCTGACGCGACACCGAGATATTCAGCCATTCACTCAACTGTGTCGGGCGGAGATCGATCGAAGTTTCAGGTCGGAATGGGAGAAAATAGTGTGTGTGGAATGGGGAGTGTTTTGATAATGCTTGTGGTGGTTGGGTGTATTTTGTTTCTGCCGCTGGTGATCGGCTCCGTTCAGCCGCCGTCCGGCCTTATGCTGCTTATTTTTCCGGTCACTCTCGCCGCCGTGTTCTTCCTCCTCTCACGTGCGTCCTCCAATTGA
Protein sequence
MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN
Homology
BLAST of Carg05407 vs. NCBI nr
Match:
KAG7011309.1 (hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query: 1 MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGM 60
MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGM
Sbjct: 1 MSGRVMQAVRFMNSGSEVQARVRSPFADATPRYSAIHSTVSGGDRSKFQVGMGENSVCGM 60
Query: 61 GSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 112
GSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN
Sbjct: 61 GSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
BLAST of Carg05407 vs. NCBI nr
Match:
XP_008447644.1 (PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 stress response protein nst1 [Cucumis melo var. makuwa] >TYK09825.1 stress response protein nst1 [Cucumis melo var. makuwa])
HSP 1 Score: 88.2 bits (217), Expect = 4.9e-14
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0
Query: 52 MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1 MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60
BLAST of Carg05407 vs. NCBI nr
Match:
XP_038888108.1 (uncharacterized protein LOC120078008 [Benincasa hispida])
HSP 1 Score: 88.2 bits (217), Expect = 4.9e-14
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0
Query: 52 MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
M + SV GMGSVL+MLVVVG +LFLPLVIGS+QPPSGL+LLIFPVTLAAVFF LSRASS+
Sbjct: 1 MEKTSVFGMGSVLMMLVVVGLVLFLPLVIGSLQPPSGLLLLIFPVTLAAVFFFLSRASSH 60
BLAST of Carg05407 vs. NCBI nr
Match:
XP_011652820.1 (uncharacterized protein LOC105435116 [Cucumis sativus])
HSP 1 Score: 85.5 bits (210), Expect = 3.2e-13
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0
Query: 52 MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
M E V GMGSVLIMLVVVG +L LPLVIGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1 MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60
BLAST of Carg05407 vs. NCBI nr
Match:
KAE8650841.1 (hypothetical protein Csa_017605, partial [Cucumis sativus])
HSP 1 Score: 77.8 bits (190), Expect = 6.6e-11
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0
Query: 52 MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLS 107
M E V GMGSVLIMLVVVG +L LPLVIGS+QPPSG +LL+FPVTLAAVFF+LS
Sbjct: 1 MEETGVFGMGSVLIMLVVVGLVLLLPLVIGSLQPPSGFLLLLFPVTLAAVFFILS 55
BLAST of Carg05407 vs. ExPASy TrEMBL
Match:
A0A5A7T8Q7 (Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001370 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0
Query: 52 MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1 MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60
BLAST of Carg05407 vs. ExPASy TrEMBL
Match:
A0A1S3BHY2 (uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 0
Query: 52 MGENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASSN 111
M E SV GMGSVLIMLVVVG +LFLPL+IGS+QPPSG +LL+FPVTLAAVFF+LSRASS+
Sbjct: 1 MEETSVFGMGSVLIMLVVVGLVLFLPLLIGSLQPPSGFLLLLFPVTLAAVFFILSRASSH 60
BLAST of Carg05407 vs. ExPASy TrEMBL
Match:
A0A2P5EXP0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 8.1e-07
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 0
Query: 54 ENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASS 111
+N VCG+ SV+++LVV +LFLPL +G VQPPS LLIFP+ L VF LLSRASS
Sbjct: 35 DNGVCGVVSVVMILVVAALLLFLPLGMGPVQPPSAFTLLIFPLVLLVVFILLSRASS 91
BLAST of Carg05407 vs. ExPASy TrEMBL
Match:
A0A2P5C9B1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171750 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 4.5e-05
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0
Query: 54 ENSVCGMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRASS 111
+ VCG+ SV+ +LVV +LFLPL +G VQPPS LLI P+ L VF LLSRASS
Sbjct: 35 DGGVCGVVSVVTILVVAALLLFLPLGMGPVQPPSAFTLLIVPLVLLVVFILLSRASS 91
BLAST of Carg05407 vs. ExPASy TrEMBL
Match:
A0A2J6MK22 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X13020 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 9.9e-05
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 0
Query: 59 GMGSVLIMLVVVGCILFLPLVIGSVQPPSGLMLLIFPVTLAAVFFLLSRAS 110
G+GSV+ ML VVGC+LFLPLV+G V PPS +LLI PV LAAV L AS
Sbjct: 9 GVGSVVAMLFVVGCLLFLPLVMGPVAPPSFPVLLIIPVVLAAVLIFLIHAS 59
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7011309.1 | 5.5e-50 | 100.00 | hypothetical protein SDJN02_26213, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_008447644.1 | 4.9e-14 | 80.00 | PREDICTED: uncharacterized protein LOC103490051 [Cucumis melo] >KAA0037855.1 str... | [more] |
XP_038888108.1 | 4.9e-14 | 81.67 | uncharacterized protein LOC120078008 [Benincasa hispida] | [more] |
XP_011652820.1 | 3.2e-13 | 78.33 | uncharacterized protein LOC105435116 [Cucumis sativus] | [more] |
KAE8650841.1 | 6.6e-11 | 78.18 | hypothetical protein Csa_017605, partial [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T8Q7 | 2.4e-14 | 80.00 | Stress response protein nst1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A1S3BHY2 | 2.4e-14 | 80.00 | uncharacterized protein LOC103490051 OS=Cucumis melo OX=3656 GN=LOC103490051 PE=... | [more] |
A0A2P5EXP0 | 8.1e-07 | 61.40 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_139530 PE=4 SV... | [more] |
A0A2P5C9B1 | 4.5e-05 | 57.89 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_171750 PE... | [more] |
A0A2J6MK22 | 9.9e-05 | 64.71 | Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X13020 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |