Carg05137 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05137
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRab-GAP TBC domain-containing protein
LocationCarg_Chr07: 3110015 .. 3113419 (+)
RNA-Seq ExpressionCarg05137
SyntenyCarg05137
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCTAAAATTCCAAAAAAGATATTTATTTTTTTCTCGTTTAATCTCGACCCTTTATCGCCTCTGCTATGATTCACATATAGAATCTCTGGTTTTATCTTCCTGCTTTCCCCTTTTACCTAAACCTTTTCTTCTGGTTGTCTCCGTTTCTAAATTCTTGTGGGAAGAATCAATTTCTTCTCATTTTTTCTAATGAAACACCCCACTACTTAGGCTGATTGTTGTTTGTAGATTTCTTTATTTACTTTCATGGCGGATTTGATGGCAATGGCGTGGAGGTTTTGGAGAACATTTCTTATTAGATAGCGTTTTTTTTCTTCATCCAAGTCTTGGGATGATATCGATTTCTATGAAGATCAGGTGCGCAGCCTATTGAAGCTCCAAAATAGACCGATTCGTGGTTTGAGGCAGGTGGGGTTTCTTTATTTGACGAAATCATCTTACCCTCTTTGTATAAAATAACCTAAACCACCAAACCTCGCTCCCCCATTTTCTTGATCTATTGGAATAGCCCCAAGAAATGTTTGGGACTCAAAGCAAAAGAGATATTGCTCTTGAATTGCAAGCTCAGATTCCAGTTCTAAGGCCGAGCATCCATGCGAGGAGGGCGAATATCACAGTTAAGTTTCAAGATCTGTATGGGTTCACAGTGGAAGGCAATGTGGATGATGTTAATGTGTTGAATGAAGTGAGGGAAAAGGTTAGGCAACAGGGTCGTGTTTGGTGGGCATTGGAGGCCAACAAAGGCGCTAATTGGTACTTGGAACCCTCTGTTTCTGAAGGGATTGCTCTCAAATCTTCTCTCAAATTGTCCACTCTCGCTAATGCCATCACTTTGAAGAAGTTGATTAGGAAGGGGATTCCTCCTGTTCTTCGCCCTAAGGTTTGGTTCTCCTTATCCGGAGCTGCAAAGAAGAAATCCACTGTTCCTGAGAGCTATTACAATGATTTGACCAAGGCTGTTGAAGGGAAAGTCACGCCTGCTACTAGGCAGATTGATCATGTAAGTTCTTTGCTTGATTTCCCTTGAAAGGGTATCTTTGTTGGTATGATCTCTTCACGATCCTTGATTTCGGATGACTATACACTTTTCAGCTACCAATAGTTTCACAATCCTATTGATGGATTCCCGCTAGGATTTTGTACACTTTGATATCATTTAGTTTCAAATCACATCGATTTAGCTTTACATATCATAATCATTCTCAACGAGTCCATACAAAGTGATCCCAACGAATAAACACCAAAGGTTTTGAATGACCGATCCAGTAGAACAACTCAAAAGATAAAAAGAAGTATCGTTCATTTCTTCGTGCTGTTCTTCTTTTGAGTAGCAGTGTATGTTAGGAAATGTTGTGAAGCTATTAATTCTTTAAGTAGTCAAGAGACCTCAATTATCATTATCTACTTATCAGGGATGAACTTTATGATTCAATAAATGATGCAGATGGGATCTGGTACCGATAGTAAGTTCGAGTATCATAATATATAGATGATTATAAATCGAATGTTAGTTCTTGTTGTTGTTTGCTATTTTTGTAACTCGGAGTTTCTATTTTTATAAATTTTCTTTCCAGTTTTTAATTTGTTCTTGTAACCATAAGATGAATGCCCTCATTGTGATTTATTCATCCATTCATTCATCTATTATTTGAATACCTCATATGCAGATGGGACCTGGAATTTTCTCTCTTAATCTGGAGAATGATTGGATGTTCATTCTATTTGTTTTAACTTGTTCTATTGTTTTTTTGATCGATACGTGTAGGACTTGCCGCGTACTTTTCCTGGTCATGCTTGGTTAGACACTCCAGAAGGTCATGCCGCTCTTCGACGTGTTCTTGTTGGGTATTCCTTCCGGGACTCGGATGTTGGATACTGTCAGGTGGGTTTGATTTTTCGTTCACTCTAACATAGCCATCTGCTCCGTAAGTTTACAGAAGTTTTTGATCGGTTTACCATATACCTGACATGTTTCAGTATTCGACATCCTTTCTTCTCGGTCTGATTGTTCTCTACTCCTGCATATTTGCATCGGCAATCATTTGAATCCTATCCTTAATTCATCTCTCTCTCGCTCGCTCGCTCTCTTCTTCTATCCTCTTCTTCCTCCCTTTTGTTTCTCTAAGAATATTGATTTAGAATACAAAAATGATTTACTAGTTATTACATAGTTTTGGTATTAATCTTTTTGTGGGCTGAACTGACCTGTAATTTAGAACACATGGAATTAATACGGTTTCGGTGCAGGGCTTAAACTATGTTGCTGCATTGTTATTGCTTGTGATGAAAACAGAAGAAGATGCTTTTTGGATGCTAGCTGTTCTCTTAGAAAATGTTTTAGTTAGTGACTGTTACACGACCAACTTGTCAGGATGTCATGTCGAGCAAAGGGTGTTCAAAGATTTACTTACCAAGAAGTGTCCCAGGTGCCTAGATTTGTTTTGAAGTTCATATTATTGTCTAGTTAGTACAAGCTATTTCTAAACTGGCATGTAAATGCAGGATAGCTGCCCATTTGGAAGCTTTGGATTTTGATGTCTCCCTTGTCGCCACGGAGTGGTTCCTCTGTCTTTTCTCGAAAAGCCTACCTTCTGAGGTAAGAACGATATCCGGGCATCTACGTTTGAGCAAATGGAAGCCCTTCCTTATATATTGTTCATCTTTTTGTTATACATCTGTCTGTAAACTCTCTAAACCATGTTTTATTTCGGTCCCTTTCTCAGACGACTCTACGTGTTTGGGACGTCCTTTTCTACGAGGGGGCAAAAGTTTTGTTTCATGTGGCTTTGGCTATCTTTAAGGTAATTGCTTTGGCTAAGGCTATCGATGACTATATATCGTCCCGAGCTCTTTGTAATGACGTCTTGATCTGTGATTTCAGATGAAGGAAGACGAGTTACTCGTAACCCATCATGTGGGAGATGTGATTAATATTCTACAAAAAACTACACATTACCTATTTGATCCCGACGATCTACTGACGGTATGCATCCAAATATTCATCCATCTTTGACATTGTTTTACTCTATGCCTTCCCCATTGTAATCTAAGGCGATTTGAAGCTTCAACTGGCTGCGTGTTAGCTCTTGTTTCTTACTGAATCAAAGATCTCCGAATCATTTCACTCGACGGTTTAAACAAAGCATTTGGATTGTGAACCTGCAGGTAGCATATGACAAGATTGGATCGATGACTACGAACACCATATCAAAGCAAAGGAAAAAGCAAGAACCAGCAGTTATGGCCGAGCTGGATCAGAGATTGAGACGACTAAATTCCCAAGTGAACGACAAAGAACATCATCCATTCCCTCCCGTCAAGTCGAGCTGATCGAACTATAAAATTATAGCTATATTTAATGGGAGAATACACGACTCCCCTGTCTGAGAGAGAGAGGAAGTTT

mRNA sequence

TGTCTAAAATTCCAAAAAAGATATTTATTTTTTTCTCGTTTAATCTCGACCCTTTATCGCCTCTGCTATGATTCACATATAGAATCTCTGGTTTTATCTTCCTGCTTTCCCCTTTTACCTAAACCTTTTCTTCTGGTTGTCTCCGTTTCTAAATTCTTGTGGGAAGAATCAATTTCTTCTCATTTTTTCTAATGAAACACCCCACTACTTAGGCTGATTGTTGTTTGTAGATTTCTTTATTTACTTTCATGGCGGATTTGATGGCAATGGCGTGGAGGTTTTGGAGAACATTTCTTATTAGATAGCGTTTTTTTTCTTCATCCAAGTCTTGGGATGATATCGATTTCTATGAAGATCAGGTGCGCAGCCTATTGAAGCTCCAAAATAGACCGATTCGTGGTTTGAGGCAGGTGGGGTTTCTTTATTTGACGAAATCATCTTACCCTCTTTGTATAAAATAACCTAAACCACCAAACCTCGCTCCCCCATTTTCTTGATCTATTGGAATAGCCCCAAGAAATGTTTGGGACTCAAAGCAAAAGAGATATTGCTCTTGAATTGCAAGCTCAGATTCCAGTTCTAAGGCCGAGCATCCATGCGAGGAGGGCGAATATCACAGTTAAGTTTCAAGATCTGTATGGGTTCACAGTGGAAGGCAATGTGGATGATGTTAATGTGTTGAATGAAGTGAGGGAAAAGGTTAGGCAACAGGGTCGTGTTTGGTGGGCATTGGAGGCCAACAAAGGCGCTAATTGGTACTTGGAACCCTCTGTTTCTGAAGGGATTGCTCTCAAATCTTCTCTCAAATTGTCCACTCTCGCTAATGCCATCACTTTGAAGAAGTTGATTAGGAAGGGGATTCCTCCTGTTCTTCGCCCTAAGGTTTGGTTCTCCTTATCCGGAGCTGCAAAGAAGAAATCCACTGTTCCTGAGAGCTATTACAATGATTTGACCAAGGCTGTTGAAGGGAAAGTCACGCCTGCTACTAGGCAGATTGATCATGACTTGCCGCGTACTTTTCCTGGTCATGCTTGGTTAGACACTCCAGAAGGTCATGCCGCTCTTCGACGTGTTCTTGTTGGGTATTCCTTCCGGGACTCGGATGTTGGATACTGTCAGGGCTTAAACTATGTTGCTGCATTGTTATTGCTTGTGATGAAAACAGAAGAAGATGCTTTTTGGATGCTAGCTGTTCTCTTAGAAAATGTTTTAGTTAGTGACTGTTACACGACCAACTTGTCAGGATGTCATGTCGAGCAAAGGGTGTTCAAAGATTTACTTACCAAGAAGTGTCCCAGGATAGCTGCCCATTTGGAAGCTTTGGATTTTGATGTCTCCCTTGTCGCCACGGAGTGGTTCCTCTGTCTTTTCTCGAAAAGCCTACCTTCTGAGACGACTCTACGTGTTTGGGACGTCCTTTTCTACGAGGGGGCAAAAGTTTTGTTTCATGTGGCTTTGGCTATCTTTAAGATGAAGGAAGACGAGTTACTCGTAACCCATCATGTGGGAGATGTGATTAATATTCTACAAAAAACTACACATTACCTATTTGATCCCGACGATCTACTGACGGTAGCATATGACAAGATTGGATCGATGACTACGAACACCATATCAAAGCAAAGGAAAAAGCAAGAACCAGCAGTTATGGCCGAGCTGGATCAGAGATTGAGACGACTAAATTCCCAAGTGAACGACAAAGAACATCATCCATTCCCTCCCGTCAAGTCGAGCTGATCGAACTATAAAATTATAGCTATATTTAATGGGAGAATACACGACTCCCCTGTCTGAGAGAGAGAGGAAGTTT

Coding sequence (CDS)

ATGTTTGGGACTCAAAGCAAAAGAGATATTGCTCTTGAATTGCAAGCTCAGATTCCAGTTCTAAGGCCGAGCATCCATGCGAGGAGGGCGAATATCACAGTTAAGTTTCAAGATCTGTATGGGTTCACAGTGGAAGGCAATGTGGATGATGTTAATGTGTTGAATGAAGTGAGGGAAAAGGTTAGGCAACAGGGTCGTGTTTGGTGGGCATTGGAGGCCAACAAAGGCGCTAATTGGTACTTGGAACCCTCTGTTTCTGAAGGGATTGCTCTCAAATCTTCTCTCAAATTGTCCACTCTCGCTAATGCCATCACTTTGAAGAAGTTGATTAGGAAGGGGATTCCTCCTGTTCTTCGCCCTAAGGTTTGGTTCTCCTTATCCGGAGCTGCAAAGAAGAAATCCACTGTTCCTGAGAGCTATTACAATGATTTGACCAAGGCTGTTGAAGGGAAAGTCACGCCTGCTACTAGGCAGATTGATCATGACTTGCCGCGTACTTTTCCTGGTCATGCTTGGTTAGACACTCCAGAAGGTCATGCCGCTCTTCGACGTGTTCTTGTTGGGTATTCCTTCCGGGACTCGGATGTTGGATACTGTCAGGGCTTAAACTATGTTGCTGCATTGTTATTGCTTGTGATGAAAACAGAAGAAGATGCTTTTTGGATGCTAGCTGTTCTCTTAGAAAATGTTTTAGTTAGTGACTGTTACACGACCAACTTGTCAGGATGTCATGTCGAGCAAAGGGTGTTCAAAGATTTACTTACCAAGAAGTGTCCCAGGATAGCTGCCCATTTGGAAGCTTTGGATTTTGATGTCTCCCTTGTCGCCACGGAGTGGTTCCTCTGTCTTTTCTCGAAAAGCCTACCTTCTGAGACGACTCTACGTGTTTGGGACGTCCTTTTCTACGAGGGGGCAAAAGTTTTGTTTCATGTGGCTTTGGCTATCTTTAAGATGAAGGAAGACGAGTTACTCGTAACCCATCATGTGGGAGATGTGATTAATATTCTACAAAAAACTACACATTACCTATTTGATCCCGACGATCTACTGACGGTAGCATATGACAAGATTGGATCGATGACTACGAACACCATATCAAAGCAAAGGAAAAAGCAAGAACCAGCAGTTATGGCCGAGCTGGATCAGAGATTGAGACGACTAAATTCCCAAGTGAACGACAAAGAACATCATCCATTCCCTCCCGTCAAGTCGAGCTGA

Protein sequence

MFGTQSKRDIALELQAQIPVLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVRQQGRVWWALEANKGANWYLEPSVSEGIALKSSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATRQIDHDLPRTFPGHAWLDTPEGHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYTTNLSGCHVEQRVFKDLLTKKCPRIAAHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMKEDELLVTHHVGDVINILQKTTHYLFDPDDLLTVAYDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSQVNDKEHHPFPPVKSS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022947368.12.3e-231100.00growth hormone-regulated TBC protein 1-like [Cucurbita moschata] >XP_023533059.1... [more]
XP_022971027.12.6e-23099.51growth hormone-regulated TBC protein 1-like [Cucurbita maxima][more]
XP_038900967.13.9e-21897.22growth hormone-regulated TBC protein 1 [Benincasa hispida][more]
KAA0053282.13.9e-21897.22TBC1 domain family member 2A [Cucumis melo var. makuwa] >TYK11875.1 TBC1 domain ... [more]
XP_022140274.11.1e-21796.96growth hormone-regulated TBC protein 1 [Momordica charantia] >AKQ06194.1 TBC1 do... [more]
Match NameE-valueIdentityDescription
Q28CB11.3e-4636.70TBC1 domain family member 2B OS=Xenopus tropicalis OX=8364 GN=tbc1d2b PE=2 SV=1[more]
Q9BYX22.2e-4637.50TBC1 domain family member 2A OS=Homo sapiens OX=9606 GN=TBC1D2 PE=1 SV=3[more]
B1AVH72.8e-4637.76TBC1 domain family member 2A OS=Mus musculus OX=10090 GN=Tbc1d2 PE=2 SV=1[more]
Q3U0J84.8e-4633.52TBC1 domain family member 2B OS=Mus musculus OX=10090 GN=Tbc1d2b PE=1 SV=2[more]
Q9UPU78.2e-4634.28TBC1 domain family member 2B OS=Homo sapiens OX=9606 GN=TBC1D2B PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1G6E21.1e-231100.00growth hormone-regulated TBC protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1I0U61.2e-23099.51growth hormone-regulated TBC protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A5A7UC131.9e-21897.22TBC1 domain family member 2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A0H4TH705.4e-21896.96TBC1 domain family member 2A OS=Momordica charantia OX=3673 GN=LOC111010987 PE=2... [more]
A0A0A0LQ829.3e-21896.96Rab-GAP TBC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406820... [more]
Match NameE-valueIdentityDescription
AT3G07890.11.2e-20489.54Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT3G07890.21.2e-20489.54Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT2G39280.11.3e-4333.24Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT2G39280.21.3e-4333.24Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT3G55020.11.8e-4335.29Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 377..397
NoneNo IPR availableGENE3D1.10.10.750coord: 97..128
e-value: 3.8E-6
score: 28.8
NoneNo IPR availableGENE3D1.10.8.270putative rabgap domain of human tbc1 domain family member 14 like domainscoord: 129..234
e-value: 1.8E-32
score: 113.6
NoneNo IPR availableGENE3D1.10.472.80coord: 235..379
e-value: 5.3E-39
score: 135.4
NoneNo IPR availablePANTHERPTHR22957:SF589RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..369
NoneNo IPR availablePANTHERPTHR22957TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINcoord: 1..369
IPR000195Rab-GTPase-TBC domainSMARTSM00164tbc_4coord: 110..327
e-value: 8.3E-63
score: 224.7
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 118..324
e-value: 2.3E-56
score: 190.8
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 113..304
score: 38.180153
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 240..355
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 105..264

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05137-RACarg05137-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090630 activation of GTPase activity
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005096 GTPase activator activity