Carg05017 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05017
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Trigger_N domain-containing protein
Location	Carg_Chr08: 1044672 .. 1048149 (-)
RNA-Seq Expression	Carg05017
Synteny	Carg05017

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGAAACTTTCAAGCTGAGGCGCGCTTGAAAAAAATGGCGTCCGCAACTGCAACGGTGGCCAACATCGCTTTAGAATTCCGGCGGCCAGTATTCACCAAAGTAAGTAATTCTATCCATATTCTCAGTAGCTTAACCAATGAATCGAATCTCGAAGCTCCACCGCATTTTTCCGCCTTCCTTCCGATATGTTTGGGATATTAGCATTTTCAAATTATTTTTTGTGTTGCAGGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGGTTTATATGAACTTCGGAGGCGTTGAATTTGTAAATGTACAGGATAGGCTGTGTACGAGGTAAACATGTATTTTGATTTTTTTATTTGTTTATTGAGCGGTGTAGTGATGGATATTGCTTGTTCAGTTTCGATTTGGTGAATTGTGCATAGAAACTGATGTATAGAAGTAGGAACGTTTCTTCATTTCCAGGTCCTCAGTTTCTTATAGTCCCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGATGGCCATAGGTAGTTCAGGTAATTCTGATTCTAGTCATGAACTCCAGTATGTTACTATTTAGCCTATGTATATTCAAATTTGTAATGGTTTAGACCTATTGTGAACTACGAGGACTAAATAATGTTCATTGACCACATCGTTACAAGTTTTAAAATACAGGAATCAAATTGTTCATGGACCAAATGATCATCAAATGTATTTTTTAACTTTATTTTTCTTCTTCTTTTCTTTCAGAATTGATAACCATTTGGTATTCAAAGTATAAGCTTATAGACATTACTTCCACCTGTGAGGTTCTTTGTTTTGTTATCTGCCTTCTAAAAAGTGTGTTCAAAATTCAAGCCAAATTTGATTTTGTTATTGGAATTGACTAAGAATTTAAATGTTTCTTTAAGAAAGATGGAAACCATAGTAAAGAATTTGTTAGAAAATAAGCATAAACTACATAAACGAAAAGCTAGAAACAAAATCGTTATTGATTCGGGTCATAGTAATTTGGAACCTATGACAAAAGTAGGACAGTTTTTACCAGTAAATCTTGTCTTGCCTGCACTCAGAAGATATTAGTTTCTTCTATATCATGTTTCAAAAAAATTGTGTTGAGTATATTGCAAATCGTGTTTAAGAAACACAATGATGGATTTGGTAAAAGTTATCTCTGTTTTGTTGATCTGTTTTGATGTCATAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGGTAACACTACCTATGTGAACTAGTTGTAGCATGCATAACATTTTTGGTTGTAGCATAGAGTTTTACCACTTTGATTTTCATCCCAAAGGAATTTACATCTAATACTTCTATAGCATTTTAGAATACTTTCCTCTGACAAGTTGTTGAAGATCTCATTCTGCCCGTAAACTATTCAACTTCGTTTCTAGTTTCGCTTTCAAGAGTAGATTTAGTGCTGTTTGATGCATGCTGATACAAATCTTACAAGATGATATGTATATTTCATATTGGAAATTTGGTGGAAGCTTTTATCCTCTTAAGTCATATAAATTATACATATAGTTCCCCATATGAAATACACATCCTACCAAATGTATTTATATTTCATATGGCAAAATGGAGGCTAATCTATTACTTAGGCCTTGCATTCCAAAACTTGATAGAACATGGTTTATTTTATTTATGAACAAGATGGTAAAACTTAGAGGGATAATCAGAGATTTCTCTTCCCCCCAACTGGCAACTACCATACTTAACTCATGAAAAGCTTACATCCTTAAGCGACTACCGTCTCGTTATCTATTCTCTTGCTCTCCCAAACCTCACTTTGTTACAACTTGTGCCCACGGTAGGAAATCAAGATGTAAGGATTGGGTACATATCTTTGATAAATGTCTAATGAAATCTAATGAACAGCTAAGAGTGGACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAGGTTTTGACGAATCTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGTAGTACCGTGATTTTCCTCCCCCCTTCACTGTGAATGTTGTTACAACCGTTCATTCATACTGTATAGACAAGCATGGGAATTGAGAAGTACCGTTTCTATAATTACAAGTTCATATATGTAGCTGCTTTTACATCTCCTAAATTTTTATGTTTAGTAACAGATGACCTGACTTTATATGGTTTCTAATGTTTTCGTGTTTTCATGCCTGTTGATGCTTGGCCAGGGAAAACTTCAAATGTGAGTTGCTTCTCTTTGCCTTTTCAACTTTCCTCTTTGGGTTTCCAAGTACTTTTAAGTTATGTCTTTTTTTTCTCAATATCGTTCTATTCTTATACATATTGTTCTATTCTTCCCCAAGGTTTCTATTTGTAAATAACGAATTCCTTCAGGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGTCACAAAGTTCGTCATACAAGAAATATTAAACTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTGTATCCTCATTGCTTTGCTCCTTTCTTATACCTACTGCCTGTGTGCTGATTGTAATTTGGGAGCTGTTTTTGAATTGGTTTTCCTAGATGCCTTTTAGAAGTTAATTATATTGGGTATATTGAAATCACTATTCGTTAACTATTTACAAACTTATAATTTTGATGATTGTGTCTGTATAGTTTCTATATCTCTATGTTTTTAAAAGTTTCAATTGTGATTTTACGTGAAAGAGCGTTACCATCATTAAGCTGATGACATGACACATGAGATCCCACATTAGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGAGGCGTTTTAAAAACCTTGAGAGAAGTCCAAAAGAGAAAGTCCAAAGAGGAGAATATTTGCGAGCGGTGGGCTTGGGCTTGGGCGGTTACATGACTTGTCTACTGTGCATATATTTTGTTAATTTGGCACAACGTAATAGACAAATGATAGAAAGAAGTCAAACAATTAGATAAAGGAGGACGTAGTTTATGAAATGAATTTGATACAGCTCGTTTTTCTTTTGTTTCGACTCCAACGCAGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGCGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACTTGAACCTGAACTTGAACCTGAACTTGAGTCTGCTTCAGAGGATGAAAATTGAGCCAAACAGGTCCCCCTTTCCAAGTGAAGATTTTCTCCACTTGGTTCTTTCTTGGCCCTCTTTCAAAGTTTTGGAAATATTTTGTTGAAGGAATAAATATTTGATTATCCATAGTGATGCATTGATCAGTATTAATGAGTTCTAGTTACT

mRNA sequence

AAGAGAAACTTTCAAGCTGAGGCGCGCTTGAAAAAAATGGCGTCCGCAACTGCAACGGTGGCCAACATCGCTTTAGAATTCCGGCGGCCAGTATTCACCAAAGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGGTTTATATGAACTTCGGAGGCGTTGAATTTGTAAATGTACAGGATAGGCTGTGTACGAGGTCCTCAGTTTCTTATAGTCCCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGATGGCCATAGGTAGTTCAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGCTAAGAGTGGACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAGGTTTTGACGAATCTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGGAAAACTTCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGCGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACTTGAACCTGAACTTGAACCTGAACTTGAGTCTGCTTCAGAGGATGAAAATTGAGCCAAACAGGTCCCCCTTTCCAAGTGAAGATTTTCTCCACTTGGTTCTTTCTTGGCCCTCTTTCAAAGTTTTGGAAATATTTTGTTGAAGGAATAAATATTTGATTATCCATAGTGATGCATTGATCAGTATTAATGAGTTCTAGTTACT

Coding sequence (CDS)

ATGGCGTCCGCAACTGCAACGGTGGCCAACATCGCTTTAGAATTCCGGCGGCCAGTATTCACCAAAGTTCCTGTTAATGGCCGCCGCCGCAATGCTCTGGTTTATATGAACTTCGGAGGCGTTGAATTTGTAAATGTACAGGATAGGCTGTGTACGAGGTCCTCAGTTTCTTATAGTCCCCTTGTAGTTGGTTCCAGATTTTTGTCCAGACCGATGGCCATAGGTAGTTCAGGTTTGGAGGCAGCCATCACAGATTACAAAGGTGCTATAACCTTAAAAAATGCTAAAATAGTTGTAGAATCTGAGGATGAAAACAAGATACAGCTAAGAGTGGACTTGACTGGGGATGAGACGCAAAAGGTATTCGATCAGGTTTTGACGAATCTGGCCCGCTCAGCCCCGCCGATGCCAGGATTTCGTAAGCAAAAAGGAGGGAAAACTTCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGATCGGGAAAATATAAAGGTGAAGGACAAGATGGTTAACACAACTCAAACAGAAGATGAACTGAAAGCGTTGTTCAGACCTGGAAAAGAGTTTGGTTTCAATGCTATACTTGAACTTGAACTTGAACTTGAACCTGAACTTGAACCTGAACTTGAGTCTGCTTCAGAGGATGAAAATTGA

Protein sequence

MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSPLVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN

Homology

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BLAST of Carg05017 vs. NCBI nr
Match: KAG7025387.1 (hypothetical protein SDJN02_11882 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 421.4 bits (1082), Expect = 4.8e-114
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60
           MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP
Sbjct: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60

Query: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120
           LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK
Sbjct: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120

Query: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRENIKVKDKMVNTTQTED 180
           VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRENIKVKDKMVNTTQTED
Sbjct: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRENIKVKDKMVNTTQTED 180

Query: 181 ELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 221
           ELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN
Sbjct: 181 ELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 220

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BLAST of Carg05017 vs. NCBI nr
Match: KAG6592974.1 (hypothetical protein SDJN03_12450, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407.1 bits (1045), Expect = 9.4e-110
Identity = 219/240 (91.25%), Postives = 219/240 (91.25%), Query Frame = 0


Query: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60
           MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP
Sbjct: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60

Query: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120
           LVVGSRFLSRP AIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK
Sbjct: 61  LVVGSRFLSRPTAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120

Query: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR----------------- 180
           VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR                 
Sbjct: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADY 180

Query: 181 ---ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 221
              ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN
Sbjct: 181 AKKENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 240

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BLAST of Carg05017 vs. NCBI nr
Match: XP_022960370.1 (uncharacterized protein LOC111461115 [Cucurbita moschata])

HSP 1 Score: 375.9 bits (964), Expect = 2.3e-100
Identity = 208/240 (86.67%), Postives = 209/240 (87.08%), Query Frame = 0


Query: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60
           MASATATVANIA EFRRPVFTKVPVNGRRRNALV +NFGGVEF NVQDRLCTRSSVSYSP
Sbjct: 1   MASATATVANIASEFRRPVFTKVPVNGRRRNALVCLNFGGVEFENVQDRLCTRSSVSYSP 60

Query: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120
           LVVGSRFLSRP AI SSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK
Sbjct: 61  LVVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120

Query: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR----------------- 180
           VFDQVLTNLARSAP MPGFRKQKGGKTSNVPKSFLLEVLGKDR                 
Sbjct: 121 VFDQVLTNLARSAPLMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMVDY 180

Query: 181 ---ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 221
              ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELEL    ELEPELESASE EN
Sbjct: 181 AKKENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELEL----ELEPELESASEGEN 236

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BLAST of Carg05017 vs. NCBI nr
Match: XP_023513631.1 (uncharacterized protein LOC111778179 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.6 bits (963), Expect = 3.0e-100
Identity = 206/240 (85.83%), Postives = 210/240 (87.50%), Query Frame = 0


Query: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60
           MASATATVANIALEFRRPVFTKVPVNGRRRNALV +NFGGVEF NVQDRLCTRSSVSYSP
Sbjct: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVCLNFGGVEFENVQDRLCTRSSVSYSP 60

Query: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120
           LVVGSRFLSRP AI SSGLEAAITDYKGAITLKNAKIVVESEDE+ IQLRVDLTGDETQK
Sbjct: 61  LVVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDESMIQLRVDLTGDETQK 120

Query: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR----------------- 180
           VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR                 
Sbjct: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADY 180

Query: 181 ---ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 221
              E+IKVKDKMVNTTQTEDELK LFRPGKEFGFNAI  LELE EPE EPEL+SASEDEN
Sbjct: 181 AKKEDIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAI--LELEPEPEPEPELDSASEDEN 238

[Close]

BLAST of Carg05017 vs. NCBI nr
Match: XP_023513632.1 (uncharacterized protein LOC111778179 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.2 bits (962), Expect = 3.9e-100
Identity = 206/240 (85.83%), Postives = 209/240 (87.08%), Query Frame = 0


Query: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60
           MASATATVANIALEFRRPVFTKVPVNGRRRNALV +NFGGVEF NVQDRLCTRSSVSYSP
Sbjct: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVCLNFGGVEFENVQDRLCTRSSVSYSP 60

Query: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120
           LVVGSRFLSRP AI SSGLEAAITDYKGAITLKNAKIVVESEDE+ IQLRVDLTGDETQK
Sbjct: 61  LVVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDESMIQLRVDLTGDETQK 120

Query: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR----------------- 180
           VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR                 
Sbjct: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADY 180

Query: 181 ---ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 221
               NIKVKDKMVNTTQTEDELK LFRPGKEFGFNAI  LELE EPE EPEL+SASEDEN
Sbjct: 181 AKKANIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAI--LELEPEPEPEPELDSASEDEN 238

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BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A6J1H8V8 (uncharacterized protein LOC111461115 OS=Cucurbita moschata OX=3662 GN=LOC111461115 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 208/240 (86.67%), Postives = 209/240 (87.08%), Query Frame = 0


Query: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60
           MASATATVANIA EFRRPVFTKVPVNGRRRNALV +NFGGVEF NVQDRLCTRSSVSYSP
Sbjct: 1   MASATATVANIASEFRRPVFTKVPVNGRRRNALVCLNFGGVEFENVQDRLCTRSSVSYSP 60

Query: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120
           LVVGSRFLSRP AI SSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK
Sbjct: 61  LVVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQK 120

Query: 121 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR----------------- 180
           VFDQVLTNLARSAP MPGFRKQKGGKTSNVPKSFLLEVLGKDR                 
Sbjct: 121 VFDQVLTNLARSAPLMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMVDY 180

Query: 181 ---ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 221
              ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELEL    ELEPELESASE EN
Sbjct: 181 AKKENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELEL----ELEPELESASEGEN 236

[Close]

BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A6J1KVH6 (uncharacterized protein LOC111497577 OS=Cucurbita maxima OX=3661 GN=LOC111497577 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98
Identity = 202/239 (84.52%), Postives = 206/239 (86.19%), Query Frame = 0


Query: 2   ASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSPL 61
           A+ATATVANIA EFRRPVFTKVPVNGRRRNAL+ MNFGGVEF NVQDRLCTRSSVSYS L
Sbjct: 6   ATATATVANIASEFRRPVFTKVPVNGRRRNALICMNFGGVEFENVQDRLCTRSSVSYSLL 65

Query: 62  VVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVDLTGDETQKV 121
           VVGSRFLSRP AI SSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRV+LTGDETQKV
Sbjct: 66  VVGSRFLSRPTAIASSGLEAAITDYKGAITLKNAKIVVESEDENKIQLRVNLTGDETQKV 125

Query: 122 FDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR------------------ 181
           FDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR                  
Sbjct: 126 FDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYA 185

Query: 182 --ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPELEPELESASEDEN 221
             ENIKVKDKMVNTTQTEDELK LFRPGKEFGFNAILEL      ELEPEL+SASEDEN
Sbjct: 186 KKENIKVKDKMVNTTQTEDELKVLFRPGKEFGFNAILEL------ELEPELDSASEDEN 238

[Close]

BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A0A0K988 (Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086160 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 7.1e-79
Identity = 168/227 (74.01%), Postives = 179/227 (78.85%), Query Frame = 0


Query: 2   ASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSPL 61
           A+ATATV NIA EF RP+FTKVPV G   NALV +NFGGVEF NV+D LC RSS SYS  
Sbjct: 6   ATATATVTNIASEFPRPIFTKVPVKGYCHNALVCLNFGGVEFDNVRDGLCRRSSFSYSFH 65

Query: 62  VVGSRFLSRPMAIGSSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVDLTGDETQK 121
            +GSRFLS+P +I SSGLEAAITDYKG  ITLKNAK+VVESE+ENKIQLRVDLTGDETQK
Sbjct: 66  KIGSRFLSKPTSIASSGLEAAITDYKGNPITLKNAKVVVESEEENKIQLRVDLTGDETQK 125

Query: 122 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR----------------- 181
           VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR                 
Sbjct: 126 VFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFIIQEILNSTMVDY 185

Query: 182 ---ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPE 208
              ENI VKDK V+TTQT DELK LF PGKEFGFNAILELE   + E
Sbjct: 186 AKKENINVKDKKVSTTQTADELKVLFNPGKEFGFNAILELESASDAE 232

[Close]

BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A1S3CBN2 (uncharacterized protein LOC103498959 OS=Cucumis melo OX=3656 GN=LOC103498959 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77
Identity = 168/228 (73.68%), Postives = 178/228 (78.07%), Query Frame = 0


Query: 2   ASATATVANIA-LEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 61
           A+ATATV NIA  EF RP+FTKV V G   NALV +NFGGVEF NVQD LC RSS SYS 
Sbjct: 6   ATATATVTNIASSEFPRPIFTKVSVKGYCHNALVCLNFGGVEFDNVQDGLCRRSSFSYSS 65

Query: 62  LVVGSRFLSRPMAIGSSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVDLTGDETQ 121
             +GSRFLS+P +I SSGLEAA+TDYKG AITLKNAK+VVESE+ENKIQLRVDLTGDETQ
Sbjct: 66  HRIGSRFLSKPTSIASSGLEAALTDYKGNAITLKNAKVVVESEEENKIQLRVDLTGDETQ 125

Query: 122 KVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR---------------- 181
           KVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR                
Sbjct: 126 KVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMAD 185

Query: 182 ----ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELELELEPE 208
               ENI VKD  VNTTQT DELK LF PGKEFGFNAILELE   + E
Sbjct: 186 YAKKENINVKDNKVNTTQTADELKVLFNPGKEFGFNAILELESASDAE 233

[Close]

BLAST of Carg05017 vs. ExPASy TrEMBL
Match: A0A6J1DRL2 (uncharacterized protein LOC111022553 OS=Momordica charantia OX=3673 GN=LOC111022553 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.8e-74
Identity = 160/222 (72.07%), Postives = 171/222 (77.03%), Query Frame = 0


Query: 1   MASATATVANIALEFRRPVFTKVPVNGRRRNALVYMNFGGVEFVNVQDRLCTRSSVSYSP 60
           MASATATV N+A E+RR  F KVPV G  R+ L   N GGVEF NVQ+ LC RSS S SP
Sbjct: 1   MASATATVTNLASEYRRASFIKVPVKGYCRSVLACSNSGGVEFDNVQNGLCRRSSFSCSP 60

Query: 61  LVVGSRFLSRPMAIGSSGLEAAITDYKG-AITLKNAKIVVESEDENKIQLRVDLTGDETQ 120
             +GSRFLSRP +I SSGLEAAITDYKG AI LKNAKIVVESEDEN IQLRVDL+GDETQ
Sbjct: 61  HKLGSRFLSRPTSIASSGLEAAITDYKGNAIALKNAKIVVESEDENLIQLRVDLSGDETQ 120

Query: 121 KVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDR---------------- 180
           K+FDQVLTNLARSAPPMPGFR QKGGKTSNVPKSFLLEVLG++R                
Sbjct: 121 KIFDQVLTNLARSAPPMPGFRMQKGGKTSNVPKSFLLEVLGEERVTKFVIQEILNSTMAD 180

Query: 181 ----ENIKVKDKMVNTTQTEDELKALFRPGKEFGFNAILELE 202
               EN+ VKDK VNTTQT DELK LF PGKEFGFNAILELE
Sbjct: 181 YAKKENVNVKDKKVNTTQTADELKLLFTPGKEFGFNAILELE 222

[Close]

BLAST of Carg05017 vs. TAIR 10
Match: AT2G30695.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-17
Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 45  NVQDRLCTRSSVSYSPLVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDE 104
           +VQ +LCTR++          +F++  +    S +E +  D    IT       VE+E  
Sbjct: 37  SVQQKLCTRAT--------NRQFVA--VCAAPSDVETSSKDESVLIT------KVETETS 96

Query: 105 NKIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRE 164
           N++++ V ++G++TQ VF+ V   +  +A P+PGFR+ KGGKT N+PK  LLE+LG  + 
Sbjct: 97  NEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKV 156

Query: 165 NIKVKDKMVNT-------------------TQTEDELKALFRPGKEFGFNAILELE 202
             +V  K++N+                    Q+ ++L+  F PG+ F F+A ++L+
Sbjct: 157 YKQVIKKLINSAIEDYVKQEDLKVGKELTVVQSYEDLEETFEPGESFSFDATIKLQ 196

[Close]

BLAST of Carg05017 vs. TAIR 10
Match: AT2G30695.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-17
Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 0


Query: 45  NVQDRLCTRSSVSYSPLVVGSRFLSRPMAIGSSGLEAAITDYKGAITLKNAKIVVESEDE 104
           +VQ +LCTR++          +F++  +    S +E +  D    IT       VE+E  
Sbjct: 37  SVQQKLCTRAT--------NRQFVA--VCAAPSDVETSSKDESVLIT------KVETETS 96

Query: 105 NKIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRKQKGGKTSNVPKSFLLEVLGKDRE 164
           N++++ V ++G++TQ VF+ V   +  +A P+PGFR+ KGGKT N+PK  LLE+LG  + 
Sbjct: 97  NEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIPGFRRVKGGKTPNIPKDVLLEILGYSKV 156

Query: 165 NIKVKDKMVNT-------------------TQTEDELKALFRPGKEFGFNAILELE 202
             +V  K++N+                    Q+ ++L+  F PG+ F F+A ++L+
Sbjct: 157 YKQVIKKLINSAIEDYVKQEDLKVGKELTVVQSYEDLEETFEPGESFSFDATIKLQ 196

The following BLAST results are available for this feature:

BLAST of Carg05017 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025387.1	4.8e-114	100.00	hypothetical protein SDJN02_11882 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592974.1	9.4e-110	91.25	hypothetical protein SDJN03_12450, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960370.1	2.3e-100	86.67	uncharacterized protein LOC111461115 [Cucurbita moschata]	[more]
XP_023513631.1	3.0e-100	85.83	uncharacterized protein LOC111778179 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023513632.1	3.9e-100	85.83	uncharacterized protein LOC111778179 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg05017 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05017 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8V8	1.1e-100	86.67	uncharacterized protein LOC111461115 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A6J1KVH6	3.1e-98	84.52	uncharacterized protein LOC111497577 OS=Cucurbita maxima OX=3661 GN=LOC111497577...	[more]
A0A0A0K988	7.1e-79	74.01	Trigger_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G086160 P...	[more]
A0A1S3CBN2	1.3e-77	73.68	uncharacterized protein LOC103498959 OS=Cucumis melo OX=3656 GN=LOC103498959 PE=...	[more]
A0A6J1DRL2	6.8e-74	72.07	uncharacterized protein LOC111022553 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Carg05017 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30695.1	2.0e-17	30.68	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]
AT2G30695.2	2.0e-17	30.68	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein ...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036611	Trigger factor ribosome-binding domain superfamily	GENE3D	3.30.70.1050		coord: 97..201 e-value: 1.9E-10 score: 42.9
IPR036611	Trigger factor ribosome-binding domain superfamily	SUPERFAMILY	102735	Trigger factor ribosome-binding domain	coord: 96..209
IPR008881	Trigger factor, ribosome-binding, bacterial	PFAM	PF05697	Trigger_N	coord: 96..211 e-value: 3.9E-8 score: 33.7
None	No IPR available	PANTHER	PTHR30560:SF4	OS01G0894700 PROTEIN	coord: 53..163 coord: 163..203
IPR005215	Trigger factor	PANTHER	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	coord: 53..163 coord: 163..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05017-RA	Carg05017-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0015031	protein transport
biological_process	GO:0043335	protein unfolding
biological_process	GO:0006457	protein folding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0043022	ribosome binding