Carg03965 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03965
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransmembrane protein
LocationCarg_Chr12: 2270391 .. 2273667 (-)
RNA-Seq ExpressionCarg03965
SyntenyCarg03965
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGTAAATTTGTAAAATCCTCGATTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTATTAATTCCCTGACTCCGATCTCTTCGATCTTGAAATTGTGTTCAAACTCAAGTCTCGTGTTTTCTCACTTCCTTGCAATATTTGTAGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTGTATGATTCGTTCCTGAAAGAAACTTTAGGGAAACCCTAATTTGTTAATTGTTGTGTGACTGATGTTGTGGAGGCGGCCAAAAAGAGCCACATAACAATGTTTCTCTGTAAGTATCTGTCAGTGTGTACTCTCAGAATTTTTGTTTGGTATCATAAGAATGTGGAAATGTTTCTTACAAATCAATTTTGATTTGTATGGTTATTCAATTTATTGAAATTTGAAGGATCTTGTTTGGTTTTCGTTTTGGAAAGCTGATTTATTTGCTGATTTATACTAATTATATGAACAAACTTGGCTTTTATAGGACTTCTCCAAACTCATTTAGTTAATGTAGGTCTTAAGTTGTCGCTTGAAAGCATGTTTCCATTATGATAGGTGAAGAATCACCAGGTCAAGAAGTGAATGAAAGCATTTTATTCTGAAATCCATTGTTGAATACACTTTATTCTGAAATGTATTGTTGAAGAGTCTGTTTTACGATATTTAAAATCTACAATTCTGCTATTGAATTTCTTTATGAAAAAGAAAAAAAAACATTTGGGAACAAATATCTTGCTCGATTTCTCACTAGGAGTAGCTTCCTTGTACCATGGAGAACGAGTTGCTGCAGCTTCTTGTGGACTAAGAGATCCATTAACTTGTCTCCTACCAGAGTTCGTTAATAGTGACAAAATTTTTGTAGCTAGTCAAATTTTACCTGAAGTAGTGCTACTTTTTCCTAACGAAGCTTTGCTCAACTCAATTGACATAAAGTAGGTTTCTTCGACCAACAAATCAAAGGTTTGAATTTCTTGCCCCCCTTATTGTTGAACTCAAAACATGTGGTTAACTACTTTTGTATAGTCGGCAGGGTCTATCTGGGCTCTATTAGTCAAGAGTTCTCAATGTAAATTTCAGATCAACAGATCAATATGCCGTTTTGCTAGATTTTTAGTTGTTTTGGATCAAGATCACCTACAGTGTTGATCAAACGAGTCTTTTGTGAAATTATTTAATAAATATTAGTTTAAATAGTGGTGTCACTGAATGAATGAAATTATGTTTTCAGCGAAAAATCTAGTGATGAAGAAAGTGATTATTCAAGATACTCTATGAAAGAGGTAGATTTGGAGTTCCTTCTTAATACTAAATATAAATAGAAAGTTCTTACTAAATAATCTCATTTGCATGAAGCCTAAAAAATTTGTGATGGTTAATTTTCAGACCAACACCAATTGAGGCTTGATGGAATCGTAATTTGAATTTGATTTATTATAGGTTTGATATTTCCTTAAGATATATGAGTCTTAGATTTACATATGTAGTATTCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATAATTATGAGTCTTAGATTTACATCTATAGTATCCCAGGTAAAAACGTCAGTGTTATTATCTTTGATATATCTGTTAAGTGAATATTAGAGCTTTATATCACGAGTATAATTGCTAGATCTTGTCCTCCATACCTTTCGGCCCAAATTATTGTTGGGATTCAAACCATCTTGGATTGACTTAGTGGTCAATAAGAGTCGTGTAAATAATAAAGAGCATAGACAAAATGAATTTAAGTCAAGATGATCATGTACTTAAGATTTATTATCTTAGGATCAAATGGTTGTAACCGGGGCGTGTGCAAGCCGATCCAAACACTCATGGATGTTATAAATATGTGTGTATGTCTATATATGTATATATGCAATCTTTTTTTTGGAGGAAGGCATTTACACACACCTAACGTCAGCCATGGTGTGTTCCTTCATATGGGTATTCATCTTGGCTGTCATGATCCCCATTTTGTCATCTTCTTTTCGCTTTGGTACGTTAGGAATAAAGACAACCATCAGGTTTTGGTTTGGATTTGTTATTGTTTTCCAGCTCTTTTCCAAATAAACTTATCAAATTCTTAAACATATATTTGCAGTGATTAGTTAGTAAATCTTCTTTTTTGTTGTTATTTAATCATCAAATTGATTTAGTTCATGTCCAACAATGAATTCATTGACATAATCATCATGGAAAATATGTAATTTGCATCCTGTCCTCTTGTTTTCTGTTGAATAGCAAAAGAATATCATCCCTTCAGCTAGCTGCTGTCTTTTGTTCTCTTATAGTAAATGAGACTCTCTGTATGGTAACAAAAAGCATATTGCTTTCTCCATTATATATAAAGTTCATCTCTAGCTGCTAGAAGAACTGTATTTACATAGGTAAATAATTAACACTTTGTGGTAATTTCCTCACTCTTTATGTGCATCAGTAGAAGCAATATGTGGTAAGAAATTGATTCTATTGAAGTGTGGATTAGGTTCTTTCCTTCAAAGGGATTCTAGTTGTCTGTTCAAGCAATCTATATAGCTCTACTTTTTGCAATGCTGTGATCATAATTGTGTTTATCCAATCTATCTGTATAATCACTTACTTCAATTTTCTGTTGTAATCCTGCTTTTCCAGCTAAGGCAGATCCCAGGAATTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCGTTAGAAGTTTTATTCCTGTAGTATGAGGAAACCATATGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCGTGTTTTTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTAAGAAAATTCTGAGAAAATGGGAGGATTTCACCCGGAGCTGGTTGCTTCCTCTTGGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTAATCAGTTCGACTCGGCCGGGTTTGGAGGTTTAATCAAAAGCAAAACCAATTGAATCTAGAGAAGTATTAAGTCGAGAATCTCTCATTACCCG

mRNA sequence

GAGGTAAATTTGTAAAATCCTCGATTTCGGTTTTGTATTGTTCATTCCTTCGGTCTCCTCACCGATCTTTCTCCGGCGAAAATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGATTACTCTAAGGCAGATCCCAGGAATTATGACCTCAATAGATGCTTTTTTCACCATTGGCGTTTACCATGTCGAAGGACGAACGTATTAGTACATTACTGCGGTAAATTTCTTTTTCTTTAGCTATGAAATCCTGAGTGTTTCGTTAGAAGTTTTATTCCTGTAGTATGAGGAAACCATATGCTAGTTTCTTTTTGAAAACAGAGGAAACTTTCTGCTGCTCGTGTTTTTGTTTTCTTTACTCGTTTGATTTTACTAATCTAATTCTAAGAAAATTCTGAGAAAATGGGAGGATTTCACCCGGAGCTGGTTGCTTCCTCTTGGTATCAATTCTAAAGATAGGTTGATATTAGTTTCATCACATTTTTGTATCAATGTGGTAATCAGTTCGACTCGGCCGGGTTTGGAGGTTTAATCAAAAGCAAAACCAATTGAATCTAGAGAAGTATTAAGTCGAGAATCTCTCATTACCCG

Coding sequence (CDS)

ATGGCGAACGAGCAACGGTCATCGATAGGGCCCTGGTTCCTCGAAGCGATACCCTTAGTTATTGTTCTTCTCATAGCAGCTCACGTCTTCGCTTTGGTGTATTGGATTTATAGGTTAGCGACTCAAAAACAACCTCCCAGGACGAAGACTCACTGA

Protein sequence

MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH
Homology
[Close]
BLAST of Carg03965 vs. NCBI nr
Match: KAG7020426.1 (hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH
Sbjct: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 51

[Close]
BLAST of Carg03965 vs. NCBI nr
Match: KAG7029467.1 (hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANE+RSS GPW LEA+P ++VLLIAAHVFALVYWIY+LA QKQPPR K H
Sbjct: 1  MANEKRSSTGPWILEAMPFIVVLLIAAHVFALVYWIYKLAAQKQPPRRKAH 51

[Close]
BLAST of Carg03965 vs. NCBI nr
Match: PON94578.1 (Transmembrane protein [Trema orientale])

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+A+PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965 vs. NCBI nr
Match: EYU22029.1 (hypothetical protein MIMGU_mgv11b017472mg [Erythranthe guttata])

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MAN Q++SI PWFLE +PL++V LI AHV ALVYWIYRLAT+KQP RTK H
Sbjct: 1  MANPQQASIRPWFLELVPLLVVFLIIAHVLALVYWIYRLATEKQPQRTKRH 51

[Close]
BLAST of Carg03965 vs. NCBI nr
Match: PON73170.1 (Transmembrane protein [Parasponia andersonii])

HSP 1 Score: 80.1 bits (196), Expect = 6.1e-12
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+ +PL++VLLIA HVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965 vs. ExPASy TrEMBL
Match: A0A2P5F9W8 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_096130 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-13
Identity = 38/51 (74.51%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+A+PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDAVPLMVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965 vs. ExPASy TrEMBL
Match: A0A022Q329 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv11b017472mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MAN Q++SI PWFLE +PL++V LI AHV ALVYWIYRLAT+KQP RTK H
Sbjct: 1  MANPQQASIRPWFLELVPLLVVFLIIAHVLALVYWIYRLATEKQPQRTKRH 51

[Close]
BLAST of Carg03965 vs. ExPASy TrEMBL
Match: A0A2N9FKX1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 1  MANEQR-SSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ+ SS+ PWFL+ +PL++V+LIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQQSSSLRPWFLDVVPLMVVVLIAAHVFALVYWIYRLATEKQPQRRKAH 52

[Close]
BLAST of Carg03965 vs. ExPASy TrEMBL
Match: A0A2P5DIT2 (Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ S   PW L+ +PL++VLLIA HVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQLSPARPWLLDVVPLIVVLLIAVHVFALVYWIYRLATEKQPQRRKAH 51

[Close]
BLAST of Carg03965 vs. ExPASy TrEMBL
Match: V4UGZ6 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010135mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.0e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTKTH 52
          MANEQ  ++ PWFL+ +PL++VLLIAAHVFALVYWIYRLAT+KQP R K H
Sbjct: 1  MANEQ-PTLRPWFLDLVPLIVVLLIAAHVFALVYWIYRLATEKQPQRRKAH 50

[Close]
BLAST of Carg03965 vs. TAIR 10
Match: AT5G10745.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.1e-08
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 1  MANEQRSSIGPWFLEAIPLVIVLLIAAHVFALVYWIYRLATQK--QPPRTKTH 52
          MA EQ   + PWFL+ +P ++VLL AAHV AL YWIYRLAT +  Q  R K H
Sbjct: 1  MAKEQH--LRPWFLDLVPALVVLLAAAHVIALGYWIYRLATDRRAQSQRGKFH 51

[Close]
BLAST of Carg03965 vs. TAIR 10
Match: AT5G24980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10745.1); Has 32 Blast hits to 32 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 5.9e-05
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 0 

Query: 14 LEAIPLVIVLLIAAHVFALVYWIYRLATQKQPPRTK 50
          ++ +P ++V L A HV ALVYWIYRLA+ + P R K
Sbjct: 5  VDLVPAMVVFLAAVHVIALVYWIYRLASDRPPQRKK 40

The following BLAST results are available for this feature:
BLAST of Carg03965 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020426.11.0e-19100.00hypothetical protein SDJN02_17110 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7029467.11.0e-1478.43hypothetical protein SDJN02_07806 [Cucurbita argyrosperma subsp. argyrosperma][more]
PON94578.11.2e-1274.51Transmembrane protein [Trema orientale][more]
EYU22029.12.1e-1272.55hypothetical protein MIMGU_mgv11b017472mg [Erythranthe guttata][more]
PON73170.16.1e-1270.59Transmembrane protein [Parasponia andersonii][more]
BLAST of Carg03965 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03965 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5F9W85.9e-1374.51Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_096130 PE=4 SV=1[more]
A0A022Q3291.0e-1272.55Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv11b017472mg P... [more]
A0A2N9FKX11.0e-1273.08Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15441 PE=4 SV=1[more]
A0A2P5DIT22.9e-1270.59Transmembrane protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_060110 PE=4... [more]
V4UGZ65.0e-1272.55Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10010135mg PE=4 ... [more]
BLAST of Carg03965 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G10745.11.1e-0856.60unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G24980.15.9e-0552.78unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35755PROTEIN, PUTATIVE-RELATEDcoord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03965-RACarg03965-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane