Carg01780 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01780
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 9359921 .. 9360375 (-)
RNA-Seq ExpressionCarg01780
SyntenyCarg01780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGCCTTAAAATGACAATAAATCTTCAATTGATTATATTTTTAATTTTGGATGGGCTCTCCACTGATCATCTGAAGAGCGAGAGCAAGAAGGCCGCCATTGACAGACCAAACACCGACCAAATTATCCAGCACAAACTCCCCGGAAGGAAGGAGATCGCCATTAGGTAGAACATCATCGAGGTTAGTACTGAACCGAATTTCTCGAGATTGTTTCCGAATCTCGGAAAGGAATCCCGAAGATTAACGCCACAAAACGAGACGCCATAGTTTATCACCATTATTACCTTCGCGATTTGTAGGAATTGAGAAGGCGGAATCTGTGGAGAGACGAGCAATCCTAACGGTTCGCCCTTGGAATTGGATAGCTCTGGAATTCATTAACCACGTACAATGGAAGTGTGCGATGTTGCAGTGCGTCGAATCTCCTTCGATTGAGCGCCATTGCGTGA

mRNA sequence

ATGGAAGGCCTTAAAATGACAATAAATCTTCAATTGATTATATTTTTAATTTTGGATGGGCTCTCCACTGATCATCTGAAGAGCGAGAGCAAGAAGGCCGCCATTGACAGACCAAACACCGACCAAATTATCCAGCACAAACTCCCCGGAAGGAAGGAGATCGCCATTAGTGCGTCGAATCTCCTTCGATTGAGCGCCATTGCGTGA

Coding sequence (CDS)

ATGGAAGGCCTTAAAATGACAATAAATCTTCAATTGATTATATTTTTAATTTTGGATGGGCTCTCCACTGATCATCTGAAGAGCGAGAGCAAGAAGGCCGCCATTGACAGACCAAACACCGACCAAATTATCCAGCACAAACTCCCCGGAAGGAAGGAGATCGCCATTAGTGCGTCGAATCTCCTTCGATTGAGCGCCATTGCGTGA

Protein sequence

MEGLKMTINLQLIIFLILDGLSTDHLKSESKKAAIDRPNTDQIIQHKLPGRKEIAISASNLLRLSAIA
Homology
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BLAST of Carg01780 vs. NCBI nr
Match: KAG7032138.1 (hypothetical protein SDJN02_06181, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MEGLKMTINLQLIIFLILDGLSTDHLKSESKKAAIDRPNTDQIIQHKLPGRKEIAISASN 60
          MEGLKMTINLQLIIFLILDGLSTDHLKSESKKAAIDRPNTDQIIQHKLPGRKEIAISASN
Sbjct: 1  MEGLKMTINLQLIIFLILDGLSTDHLKSESKKAAIDRPNTDQIIQHKLPGRKEIAISASN 60

Query: 61 LLRLSAIA 69
          LLRLSAIA
Sbjct: 61 LLRLSAIA 68

The following BLAST results are available for this feature:
BLAST of Carg01780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032138.11.2e-26100.00hypothetical protein SDJN02_06181, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01780-RACarg01780-RAmRNA