Carg01752 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01752
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 9505598 .. 9506193 (-)
RNA-Seq ExpressionCarg01752
SyntenyCarg01752
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGTCGATACATCATTAATGCAAAAGCTTCTCCTTTTTCGACCATTGACTCTAGGTATATTCACTGATTGGTGGTAATGCCTGGTTCATTCCTTTTTTTTTTTCTAATGCATTTTCTTTGTCTGTGGTAATGCTGACTGCATTTCTCTTAAGATGTGTGACATAGCAGACAGCAAATGTTATATTCAAATTTGAAGAACGAATCAGAAAGAATTTCATTCCAACATCTGAAAAGTGTAAGTTAAAAATCTGTAACGAAACCAGTATCATATCCATGGAGTAAAAAATTAATCGATGAACATTCTTTATGTAGCAAAAAACAAAAAATTCAATTGCTTGCTGTATGATTACTGTGTACAGGTCCCTAAGCTGCAGGTTGCCAAGAGTTGTTAACCAGAAGCTTTTTCCCACGGTAGGTATCCTGTCAAAGGATCAGAGAACAAAGTCTGGACAAAGTCTCGCAGTCCAGTGTCCCAAACTTCACAGAACTGTAACCTCCAATTGGGTGGTTCGATTGCCTCTGTCCCAAGCCCAGGTGCTCTATCCTTCGACCCTTCATTCTGTGCCTCCTGCCAGTCAACAACATAGGTAG

mRNA sequence

ATGTATAGTCGATACATCATTAATGCAAAAGCTTCTCCTTTTTCGACCATTGACTCTAGGTCCCTAAGCTGCAGGTTGCCAAGAGTTGTTAACCAGAAGCTTTTTCCCACGGTAGGTATCCTGTCAAAGGATCAGAGAACAAAGTCTGGACAAAGTCTCGCAGTCCAGTGTCCCAAACTTCACAGAACTGTAACCTCCAATTGGGTGGTTCGATTGCCTCTGTCCCAAGCCCAGGTGCTCTATCCTTCGACCCTTCATTCTGTGCCTCCTGCCAGTCAACAACATAGGTAG

Coding sequence (CDS)

ATGTATAGTCGATACATCATTAATGCAAAAGCTTCTCCTTTTTCGACCATTGACTCTAGGTCCCTAAGCTGCAGGTTGCCAAGAGTTGTTAACCAGAAGCTTTTTCCCACGGTAGGTATCCTGTCAAAGGATCAGAGAACAAAGTCTGGACAAAGTCTCGCAGTCCAGTGTCCCAAACTTCACAGAACTGTAACCTCCAATTGGGTGGTTCGATTGCCTCTGTCCCAAGCCCAGGTGCTCTATCCTTCGACCCTTCATTCTGTGCCTCCTGCCAGTCAACAACATAGGTAG

Protein sequence

MYSRYIINAKASPFSTIDSRSLSCRLPRVVNQKLFPTVGILSKDQRTKSGQSLAVQCPKLHRTVTSNWVVRLPLSQAQVLYPSTLHSVPPASQQHR
Homology
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BLAST of Carg01752 vs. NCBI nr
Match: KAG7032166.1 (hypothetical protein SDJN02_06209, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 9.3e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MYSRYIINAKASPFSTIDSRSLSCRLPRVVNQKLFPTVGILSKDQRTKSGQSLAVQCPKL 60
          MYSRYIINAKASPFSTIDSRSLSCRLPRVVNQKLFPTVGILSKDQRTKSGQSLAVQCPKL
Sbjct: 1  MYSRYIINAKASPFSTIDSRSLSCRLPRVVNQKLFPTVGILSKDQRTKSGQSLAVQCPKL 60

Query: 61 HRTVTSNWVVRLPLSQAQVLYPSTLHSVPPASQQHR 97
          HRTVTSNWVVRLPLSQAQVLYPSTLHSVPPASQQHR
Sbjct: 61 HRTVTSNWVVRLPLSQAQVLYPSTLHSVPPASQQHR 96

The following BLAST results are available for this feature:
BLAST of Carg01752 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032166.19.3e-46100.00hypothetical protein SDJN02_06209, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg01752 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01752 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01752 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01752-RACarg01752-RAmRNA