Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAGAGCCCTTCTCAGGTTTGAGGACTTTTGGTTTCATCTTGATTTTTCCCCTGTTTTCAGATTATTAGTGTATACATGTAGAAGAAGTGATTAATGTTCACTAATGTGCAACAATGTTGTTTAACTGGGTTGTTCTCATTATACTTTGAGAAATTGGAATTTGAAAGGACCAACATCCCTTATCTGCCCCGAGATAACCCGATTTCCATTTCCATATCTCGTGCTAGTTCGATTATGTGAAGTATAAACCTTGCCTGTGTTAGATTGTCTTGGTTTATACTTTCTATTGGGGCTAAGTTATTAATTGAATAAAGGAGATAATAGATATGAATGGTCAGATTCTCTGGATTAGATGACCTCACTTCAAAAGTTTAGATTTTATTAAGTTTGCCGTTTTTTCTTTTCCTTTTTGCCAATTTCAGAATATAAATCTCTCTTTGCTATGCCCCCAACAATTGCATAGAAAAGACGGCGTGCTATGTTGCTCATCATTTATGCGGTTGTTTTGACTTATGGCAGGTCCGCATCAACTAGATGTTAATGGGAAGAGAGATTGTCTGCTGTGCATCCTCCTGTGTCGATTCCACCATCATCCACACATTTGTTCAAGTTGTTTATCTTACATATATTCCAAGAAGGAGGCGCAATCTCTTCCTTTTCCTAAAATTTATGAATAGTTCATGTTGGCAATGAGTAAAATACCATGCAACGTTAGGACTTTTTGAGGTGTGATTACTCCTTCACACGAATAAACTACAGTATTGAGAAATTCAATTCAACTCCAGATTCTACAGAATCAATGATATGTAAGGGTCATGGAACAAAATTTTGCCCCGTAAATCACTACTATGTCGCTTCTTGTGGCTGATTATTTCTTTAGAATCACTGTTCATTCATCATCCATTCTTTTGTAGCTCACTTAAAATTAAAGTTCTAACATTTTTTTTTAAGACTTTGCC
mRNA sequence
GGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAGAGCCCTTCTCAGGTCCGCATCAACTAGATGTTAATGGGAAGAGAGATTGTCTGCTGTGCATCCTCCTGTGTCGATTCCACCATCATCCACACATTTGTTCAAGTTGTTTATCTTACATATATTCCAAGAAGGAGGCGCAATCTCTTCCTTTTCCTAAAATTTATGAATAGTTCATGTTGGCAATGAGTAAAATACCATGCAACGTTAGGACTTTTTGAGGTGTGATTACTCCTTCACACGAATAAACTACAGTATTGAGAAATTCAATTCAACTCCAGATTCTACAGAATCAATGATATGTAAGGGTCATGGAACAAAATTTTGCCCCGTAAATCACTACTATGTCGCTTCTTGTGGCTGATTATTTCTTTAGAATCACTGTTCATTCATCATCCATTCTTTTGTAGCTCACTTAAAATTAAAGTTCTAACATTTTTTTTTAAGACTTTGCC
Coding sequence (CDS)
GGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAGAGCCCTTCTCAGGTCCGCATCAACTAGATGTTAA
Protein sequence
GLKELTDTLSRDFTEGQPRALLRSASTRC
Homology
BLAST of Carg01724 vs. NCBI nr
Match:
XP_022957047.1 (uncharacterized protein LOC111458539 [Cucurbita moschata])
HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPRALLRSASTRC 293
BLAST of Carg01724 vs. NCBI nr
Match:
KAG7032193.1 (hypothetical protein SDJN02_06236, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 29
BLAST of Carg01724 vs. NCBI nr
Match:
KAG6601413.1 (hypothetical protein SDJN03_06646, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPRALLRSASTRC 293
BLAST of Carg01724 vs. NCBI nr
Match:
XP_023000123.1 (uncharacterized protein LOC111494386 [Cucurbita maxima])
HSP 1 Score: 59.3 bits (142), Expect = 6.3e-06
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTEGQP+ALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPKALLRSASTRC 293
BLAST of Carg01724 vs. NCBI nr
Match:
XP_022968362.1 (uncharacterized protein LOC111467623 [Cucurbita maxima])
HSP 1 Score: 55.5 bits (132), Expect = 9.1e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTE QPRALLR++STRC
Sbjct: 265 GLKELTDTLSRDFTEDQPRALLRASSTRC 293
BLAST of Carg01724 vs. ExPASy TrEMBL
Match:
A0A6J1GY34 (uncharacterized protein LOC111458539 OS=Cucurbita moschata OX=3662 GN=LOC111458539 PE=4 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPRALLRSASTRC 293
BLAST of Carg01724 vs. ExPASy TrEMBL
Match:
A0A6J1KLR1 (uncharacterized protein LOC111494386 OS=Cucurbita maxima OX=3661 GN=LOC111494386 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTEGQP+ALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPKALLRSASTRC 293
BLAST of Carg01724 vs. ExPASy TrEMBL
Match:
A0A6J1HTC5 (uncharacterized protein LOC111467623 OS=Cucurbita maxima OX=3661 GN=LOC111467623 PE=4 SV=1)
HSP 1 Score: 55.5 bits (132), Expect = 4.4e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTE QPRALLR++STRC
Sbjct: 265 GLKELTDTLSRDFTEDQPRALLRASSTRC 293
BLAST of Carg01724 vs. ExPASy TrEMBL
Match:
A0A6J1DCD3 (uncharacterized protein LOC111019198 OS=Momordica charantia OX=3673 GN=LOC111019198 PE=4 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSR FTE QPRALLRS STRC
Sbjct: 265 GLKELTDTLSRGFTEDQPRALLRSTSTRC 293
BLAST of Carg01724 vs. ExPASy TrEMBL
Match:
A0A6J1G0S9 (uncharacterized protein LOC111449632 OS=Cucurbita moschata OX=3662 GN=LOC111449632 PE=4 SV=1)
HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0
Query: 1 GLKELTDTLSRDFTEGQPRALLRSASTRC 30
GLKELTDTLSRDFTE QPRALLR++S RC
Sbjct: 265 GLKELTDTLSRDFTEDQPRALLRASSARC 293
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022957047.1 | 2.8e-06 | 100.00 | uncharacterized protein LOC111458539 [Cucurbita moschata] | [more] |
| KAG7032193.1 | 2.8e-06 | 100.00 | hypothetical protein SDJN02_06236, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6601413.1 | 2.8e-06 | 100.00 | hypothetical protein SDJN03_06646, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023000123.1 | 6.3e-06 | 96.55 | uncharacterized protein LOC111494386 [Cucurbita maxima] | [more] |
| XP_022968362.1 | 9.1e-05 | 89.66 | uncharacterized protein LOC111467623 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GY34 | 1.4e-06 | 100.00 | uncharacterized protein LOC111458539 OS=Cucurbita moschata OX=3662 GN=LOC1114585... | [more] |
| A0A6J1KLR1 | 3.1e-06 | 96.55 | uncharacterized protein LOC111494386 OS=Cucurbita maxima OX=3661 GN=LOC111494386... | [more] |
| A0A6J1HTC5 | 4.4e-05 | 89.66 | uncharacterized protein LOC111467623 OS=Cucurbita maxima OX=3661 GN=LOC111467623... | [more] |
| A0A6J1DCD3 | 1.7e-04 | 89.66 | uncharacterized protein LOC111019198 OS=Momordica charantia OX=3673 GN=LOC111019... | [more] |
| A0A6J1G0S9 | 1.7e-04 | 86.21 | uncharacterized protein LOC111449632 OS=Cucurbita moschata OX=3662 GN=LOC1114496... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
