Carg01282 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01282
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 244043 .. 244473 (-)
RNA-Seq Expression	Carg01282
Synteny	Carg01282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTTGTGTACAAAAATTTTGGTGGAACAGGTTCCATTTTTCTGGGGAGGCAGAGAAGAGCAACATGCAGCTGTAAACGCTTGCTGTTGTCATTAGAAGCAGGGAGGAAGATTGGGTCAAGAAAGATTGGGCTGTACATTAGGTAAGCGAAGTGTAGAGGACATCAGAAGCTTATTGCGGTGGGTGAGGAATTTTTTGTTTCGTTGTTCAACATGTTGGTTGCTTTACGTTTTCATGTATCCAAAGTGGCTTTAAAATAAAGCTCAAATTCCACATGCCACTTTCAGATTCTATTCACACACTGATTCATCTATTCTTCTATTTCTTTTACCACTTTTTTCTTGTTAGCTATATCTGTCTTGCTTCCTTCTTCTTCTCCCTCTCGGCAGCTTCTCCTCCCCCTTGTAAATGGGTCCGAACCGACTGA

mRNA sequence

ATGAAAGTTGTGTACAAAAATTTTGGTGGAACAGGTTCCATTTTTCTGGGGAGGCAGAGAAGAGCAACATGCAGCTGTAAACGCTTGCTGTTGTCATTAGAAGCAGGGAGGAAGATTGGGTCAAGAAAGATTGGGCTGTACATTAGCTATATCTGTCTTGCTTCCTTCTTCTTCTCCCTCTCGGCAGCTTCTCCTCCCCCTTGTAAATGGGTCCGAACCGACTGA

Coding sequence (CDS)

ATGAAAGTTGTGTACAAAAATTTTGGTGGAACAGGTTCCATTTTTCTGGGGAGGCAGAGAAGAGCAACATGCAGCTGTAAACGCTTGCTGTTGTCATTAGAAGCAGGGAGGAAGATTGGGTCAAGAAAGATTGGGCTGTACATTAGCTATATCTGTCTTGCTTCCTTCTTCTTCTCCCTCTCGGCAGCTTCTCCTCCCCCTTGTAAATGGGTCCGAACCGACTGA

Protein sequence

MKVVYKNFGGTGSIFLGRQRRATCSCKRLLLSLEAGRKIGSRKIGLYISYICLASFFFSLSAASPPPCKWVRTD

Homology

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BLAST of Carg01282 vs. NCBI nr
Match: KAG7027723.1 (hypothetical protein SDJN02_08900, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 2.8e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MKVVYKNFGGTGSIFLGRQRRATCSCKRLLLSLEAGRKIGSRKIGLYISYICLASFFFSL 60
          MKVVYKNFGGTGSIFLGRQRRATCSCKRLLLSLEAGRKIGSRKIGLYISYICLASFFFSL
Sbjct: 1  MKVVYKNFGGTGSIFLGRQRRATCSCKRLLLSLEAGRKIGSRKIGLYISYICLASFFFSL 60

Query: 61 SAASPPPCKWVRTD 75
          SAASPPPCKWVRTD
Sbjct: 61 SAASPPPCKWVRTD 74

The following BLAST results are available for this feature:

BLAST of Carg01282 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027723.1	2.8e-34	100.00	hypothetical protein SDJN02_08900, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg01282 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01282 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01282 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01282-RA	Carg01282-RA	mRNA