Carg01056 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg01056
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 1432291 .. 1433872 (+)
RNA-Seq ExpressionCarg01056
SyntenyCarg01056
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGATTCATGAAGAGTTTATACAACAACAGGTTTTATTTGTTCTACAGAAAACAGAGTAAAGGAAGCCCACTCTGTTTCCTTAAAACAGAGCACACACGACGAAGAGGGATAAAGAAAGGAATCTGGGGATGTTTTAAGTTTACAAAGATTGAAGAAAGAACAAAAGGAAAACCCAGAAATCAACACTTTGGAAGATCGGCTGGCGGCGGCCGTAGTTTCTGGTCGGATTTTGGGCCGTCGAGGACAATCCATGCCATTCTCAGCCCCCAGCTCGTGTGGACGTCAAAATGGCAGTGCATGAACCAAACCCCTGTTAACCAAAATTTGAATGTGATTTGAAAATGGAACATTTTGAATGGTGAAAGACAAGTTGTTCCCTCACCTGGGTTATCGGCGAAGAAACGGAAAGCCAACCAGCCGCCGGAGGGAACGCCGGCAGTGTTCCTCTCAACCGGGTCAACCAGATTGAAATTAGCTGGATCCTTATTCATGTCGAAATTCCCAAAACCTTCTCCGACAATAAAGAAATTATATCCATGAAGATGGAGTGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACGACTTCCACGCTCGCATTAAACGGCAGCACTACCACACTCGTACTGTTACTCACAAATGTATTATTGAGCGGCACTCCGGTGTAGTTGAAAGGAACAACCGGCTTGGCCGGAAAATTAGTTCGGTAAACCCCATTAGTCCGGCGGGAGAAATACGCCTGCAGAATCGCCGTCTTCGGCAGAGCAAAAGAGACATTATTAACAGAGGCAGCGAATTTCGTACCGTTGGGACCTTGACACGTGACGTTTTTCGGACATGGCGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCCTGTCTACGGTTTGTGGGACATTGGCAGGGAATTTAGCATTGGCAAGAGACCGGAATTTTCTCGAGAAATTGGCGACGAAATTCGTGTCGTTAATTGCCGGGAGATTGGGAAGTTGAGTGGCCGGAGTTTGGGTGGTGGGTGGGTCGCCGTACTGGAGGATTCCGACGGTGGTGGAATTGTCGAAAGTACCCTGGCCAGTGAAGTACGGTCGAGCCGCCATGAGGAAACTGCCGTTGGTGAAATTGGGATTTGTTTTAAGAAGAACATTGGAGGTTTGGCCGGGAGTGAGTAATATCACGTCGGTTTGAAAGGGCTTGACGTAAACGGCGTCGGCTTCTACGACGGTCAGAGAATGGTTGGCGATGGTGAAGAAAAGCTCGTCGTTGAGTGCAGCGTTGATCAACCGGAGTAGGTACGTTTTTCCAGGCTTCACTTTTAGCTTAAATGTATCTGAAAATCAAAATATAATCATTTTTAGTGTTAATTAAACAAGATTAATAGAGAGATTAAAGTGATTACCATTAGAAGAGGAGCAATTATAAAGAGGGCCAGGGAGTCCATTAATGGTGTACGCATCGGAAACATTCGGCGCTGCTCCGGTCTGAAGCGCCTGCTGAATCACACTCTCCGGCCTCACATTGAACCACTCACCCAAAATGATTGGGACTTCTCTGTGGGGCTTCTCGAACGGATATGA

mRNA sequence

AGAGATTCATGAAGAGTTTATACAACAACAGGTTTTATTTGTTCTACAGAAAACAGAGTAAAGGAAGCCCACTCTGTTTCCTTAAAACAGAGCACACACGACGAAGAGGGATAAAGAAAGGAATCTGGGGATGTTTTAAGTTTACAAAGATTGAAGAAAGAACAAAAGGAAAACCCAGAAATCAACACTTTGGAAGATCGGCTGGCGGCGGCCGTAGTTTCTGGTCGGATTTTGGGCCGTCGAGGACAATCCATGCCATTCTCAGCCCCCAGCTCGTGTGGACGTCAAAATGGCAGTGCATGAACCAAACCCCTGTTAACCAAAATTTGAATGTGATTTGAAAATGGAACATTTTGAATGGTGAAAGACAAGTTGTTCCCTCACCTGGGTTATCGGCGAAGAAACGGAAAGCCAACCAGCCGCCGGAGGGAACGCCGGCAGTGTTCCTCTCAACCGGGTCAACCAGATTGAAATTAGCTGGATCCTTATTCATGTCGAAATTCCCAAAACCTTCTCCGACAATAAAGAAATTATATCCATGAAGATGGAGTGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACGACTTCCACGCTCGCATTAAACGGCAGCACTACCACACTCGTACTGTTACTCACAAATGTATTATTGAGCGGCACTCCGGTGTAGTTGAAAGGAACAACCGGCTTGGCCGGAAAATTAGTTCGGTAAACCCCATTAGTCCGGCGGGAGAAATACGCCTGCAGAATCGCCGTCTTCGGCAGAGCAAAAGAGACATTATTAACAGAGGCAGCGAATTTCGTACCGTTGGGACCTTGACACGTGACGTTTTTCGGACATGGCGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCCTGTCTACGGTTTGTGGGACATTGGCAGGGAATTTAGCATTGGCAAGAGACCGGAATTTTCTCGAGAAATTGGCGACGAAATTCGTGTCGTTAATTGCCGGGAGATTGGGAAGTTGAGTGGCCGGAGTTTGGGTGGTGGGTGGGTCGCCGTACTGGAGGATTCCGACGGTGGTGGAATTGTCGAAAGTACCCTGGCCAGTGAAGTACGGTCGAGCCGCCATGAGGAAACTGCCGTTGGTGAAATTGGGATTTGTTTTAAGAAGAACATTGGAGGTTTGGCCGGGAGTGAGTAATATCACGTCGGTTTGAAAGGGCTTGACGTAAACGGCGTCGGCTTCTACGACGGTCAGAGAATGGTTGGCGATGGTGAAGAAAAGCTCGTCGTTGAGTGCAGCGTTGATCAACCGGAGTAGAGAGATTAAAGTGATTACCATTAGAAGAGGAGCAATTATAAAGAGGGCCAGGGAGTCCATTAATGGTGTACGCATCGGAAACATTCGGCGCTGCTCCGGTCTGAAGCGCCTGCTGAATCACACTCTCCGGCCTCACATTGAACCACTCACCCAAAATGATTGGGACTTCTCTGTGGGGCTTCTCGAACGGATATGA

Coding sequence (CDS)

ATGGTGAAGAAAAGCTCGTCGTTGAGTGCAGCGTTGATCAACCGGAGTAGAGAGATTAAAGTGATTACCATTAGAAGAGGAGCAATTATAAAGAGGGCCAGGGAGTCCATTAATGGTGTACGCATCGGAAACATTCGGCGCTGCTCCGGTCTGAAGCGCCTGCTGAATCACACTCTCCGGCCTCACATTGAACCACTCACCCAAAATGATTGGGACTTCTCTGTGGGGCTTCTCGAACGGATATGA

Protein sequence

MVKKSSSLSAALINRSREIKVITIRRGAIIKRARESINGVRIGNIRRCSGLKRLLNHTLRPHIEPLTQNDWDFSVGLLERI
Homology
[Close]
BLAST of Carg01056 vs. NCBI nr
Match: KAG7027945.1 (hypothetical protein SDJN02_09124 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 2.8e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MVKKSSSLSAALINRSREIKVITIRRGAIIKRARESINGVRIGNIRRCSGLKRLLNHTLR 60
          MVKKSSSLSAALINRSREIKVITIRRGAIIKRARESINGVRIGNIRRCSGLKRLLNHTLR
Sbjct: 1  MVKKSSSLSAALINRSREIKVITIRRGAIIKRARESINGVRIGNIRRCSGLKRLLNHTLR 60

Query: 61 PHIEPLTQNDWDFSVGLLERI 82
          PHIEPLTQNDWDFSVGLLERI
Sbjct: 61 PHIEPLTQNDWDFSVGLLERI 81

The following BLAST results are available for this feature:
BLAST of Carg01056 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027945.12.8e-35100.00hypothetical protein SDJN02_09124 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg01056 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01056 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg01056 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01056-RACarg01056-RAmRNA