Carg00896 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00896
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Shikimate kinase
Location	Carg_Chr03: 7304499 .. 7308219 (-)
RNA-Seq Expression	Carg00896
Synteny	Carg00896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATCAAGTTAGCTGAGTAACAGAGGTGGTTTGGTGGGACTATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGTAACATTGGACTTCCAGTGTGATTAGAAAAGTGCGTTTTTCTTCGTCGTTCATCCTCATGTCTTCCTTTCGTAAGGACTATGGATTTTATTTTATTTTTTGGTTTGGTGAATTACTTTGCATTCTTTTTCGGTCCTAAATTAATTTCCATTTCTCTGAAGAATCAAATATTATGAAAGCAGGAACTACGCAGTATGATCGAGTAATTTGCTGAAGCAGTCTAATTCTACATCTATGGCGTTTTGCTATTTTGAGTTTTTCTGAAACTTTATACAGAACCCTTTTTTACATTCTTAAAACGTCAACATTTTTTCACATTATCTTGCTGAGCGGATCCACATTTTTTCACATTATCTTTCGTATGATACCATTAGTGATTTTGTTGCCATTAGAAAGGTTAATAGTCCCAGTTTAAAACATGACTTTTGTTTTATTATTTTGTTGTTGTTCTTGTCTACAGCTTGCGAGTAACCAATTGATCTTTGGCTTATTGCTTTCAATGCTCCTTTTGTAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGGTCAAGCAGAATTTTTGTTGCATGTTTACATCAACCTTAATTAGAGTTGTTGTGATGTGGAATATGTGATTTTCTTTCTAATTCATGTTAAGCTAAACTAGAATTTGAAAAAAAAAAAAAAAAAAAAAGTGCAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGTTAGTGTGTGTTCTTTTTTACACTTTATAATTGGCAATTCTTCTGCTTAGATACTAATCTATCAGAATGCTACTTTGCAGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGGTTTGCGTTATTTAATTGCTAGCTAGCACAGGATTTTTGTTTGAATTTTTACAAACAAGGAAATAAAGAACATAGTGGAAGAAAAATTAATGCCTAATTTCCTTAACATCACGTCACTATTCCAGCATCGAAGGTCTATTCAAAGCTGAACTGGATGGAAGAACAGTTTTGAAGTGATATTACATGCAATCTATGATTTTTACTATGCTTTCTGACAGAAAATTATGGCATTCGTAATTTGCATCCATTTTTTAGCACAAGTATGTTAATGCAAGTTACTTGCTTTTGTATTAATTATGCATTACATATCTGGATCAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGGTTAGTTAACCTGCAATTTGACCATCCTTCGCATCTGTGAAGAGGACGGTTATTACTATCTACTGTATTTGATGTTTTTATGAACCGAGTGTAATGTGGGAAGCACAATGCTACCATGATAATTTTCATTGAAGTGAATATTTTAATTTTCTAAAGATGTTGGAAGGGGCAAATGTCAGCAATGTGATTTTCCTTCTGCTTCTATAGAAATTGAAAGGGATCTGGATTTATAATTGGGGATATCCAAAAAGCCTGATGAATTTTTTCAATTGCTATGGTTTTAAGCAGCTAAGTAAAATGTTTTGCAACTCTAAGCTGTTATAGCCGATCAAAGTTAGTGACAGTGATTTTTCTGTTAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGTAATTTGTTTGGACACTCACACTTTCTAATTGTTATTTGGTTCTCTGTTTTTTTTTTTTTTGTTAAGTGGGACTCGTCCTATTTGATTGTAGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGTGGTGAATCATTCTCTGTGAGGGAAACATTTATCCATAAACTATTTACTTTTCTTTATCAAGGGTTTTAGGGATGTTGCTTTTTGGTGTCGAACTCGTGATGCTTGATCCTAGCACATCTTTTAATCTGCTGATTCTCATTCAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTATGAAATAAATAAATCTTGATACTCCTTTGTCATTCTGGAAATATAGAAGTAACAAACTTCGCGTTGGAATCCATAAATCTACAGCGTTTGTTTATTGTTCCTGTATCTTCTGTGTTAAGGAGGTGACTAAAACTTAAAATCAAGTTGTTTTTGTTAACTTGCAGGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGATTAAAAAAATCTGACCTTTCAATAAAGAGAAAACCTTCTATATTAAAAAATGCTTGAGTTTTTAAGTGTATTCTTTCCAGGCGCTTGTACAAATTCAAACATTCCTAGAACAGGAAGATGGTTATTCTACTAGTTAAGACTGCAAATGTTCAATGTCCAGAGCTTTAAGCCTCTCAAGCATGGAAGAAAGCCTTGCTTCGACTCCTGGCAATTGTATAATATGGTGGGTGGTAAGTACTTCTTTGAACTTGATGATCTATGTCAATGTTAGTAAGTGTATCTCTCTGTAAATTTTGTGGTCGATAAAACTTGTGTGTACATGCACATAGTATGTATGACTATTGCATTATTTGTAGATTGTTGTTTGATTATCATCATATTTCTGTATGCATGTATAATATTCCATTGCATCTGAAATAAGCATCATTGTTTGATCACCATTTTATTTTTGTATGTTTGTGTGGTCCATTGCGTTTGAAATATAACATCTTGTTGGCAATTTTGTTTTTATTGAATTAAAAAGGTGTCATTTTAATCGCGTATGCATGTAGATTTCCTTAGGAGTTGAAAAATCGAAACATTTATCAAATTTTGTCATTCTTTCTGTCATAAAGAACAATTTCATGAACTTATATAAAGGTTAGAAATGCAACATTTCTTAATGGGTTGGCCATGAATTGAGATCATCATCTATGTTACCTACCAGCTGAAATATGATATCTGATGACAAAATGGGGGCAGCTCGACAATTCTACTGGCTGGGCCTTTCATTTAGTTGCCCGCTTCCAATATGATTAGACATCAATTATTGAGTTATGTTATGTTATGTGTTATGTCCCCTTCCCTCTTGATGTTAGTCTTAATCCCTCGCTTCTGCACATTCTCTCTTCAATGGAGAAGTTGGTCGGGCTAATTTTTCTTTAGCATCGTTCTATAATAATCCCTATCAACTCCAAACCATGTTTCAGATTTATCAAAAAA

mRNA sequence

TAATCAAGTTAGCTGAGTAACAGAGGTGGTTTGGTGGGACTATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGATTAAAAAAATCTGACCTTTCAATAAAGAGAAAACCTTCTATATTAAAAAATGCTTGAGTTTTTAAGTGTATTCTTTCCAGGCGCTTGTACAAATTCAAACATTCCTAGAACAGGAAGATGGTTATTCTACTAGTTAAGACTGCAAATGTTCAATGTCCAGAGCTTTAAGCCTCTCAAGCATGGAAGAAAGCCTTGCTTCGACTCCTGGCAATTGTATAATATGGTGGGTGGTAAGTACTTCTTTGAACTTGATGATCTATGTCAATGTTAGTAAGTGTATCTCTCTGTAAATTTTGTGGTCGATAAAACTTGTGTGTACATGCACATAGTATGTATGACTATTGCATTATTTGTAGATTGTTGTTTGATTATCATCATATTTCTGTATGCATGTATAATATTCCATTGCATCTGAAATAAGCATCATTGTTTGATCACCATTTTATTTTTGTATGTTTGTGTGGTCCATTGCGTTTGAAATATAACATCTTGTTGGCAATTTTGTTTTTATTGAATTAAAAAGGTGTCATTTTAATCGCGTATGCATGTAGATTTCCTTAGGAGTTGAAAAATCGAAACATTTATCAAATTTTGTCATTCTTTCTGTCATAAAGAACAATTTCATGAACTTATATAAAGGTTAGAAATGCAACATTTCTTAATGGGTTGGCCATGAATTGAGATCATCATCTATGTTACCTACCAGCTGAAATATGATATCTGATGACAAAATGGGGGCAGCTCGACAATTCTACTGGCTGGGCCTTTCATTTAGTTGCCCGCTTCCAATATGATTAGACATCAATTATTGAGTTATGTTATGTTATGTGTTATGTCCCCTTCCCTCTTGATGTTAGTCTTAATCCCTCGCTTCTGCACATTCTCTCTTCAATGGAGAAGTTGGTCGGGCTAATTTTTCTTTAGCATCGTTCTATAATAATCCCTATCAACTCCAAACCATGTTTCAGATTTATCAAAAAA

Coding sequence (CDS)

ATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGA

Protein sequence

MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEVPLFQPHLCSCYV

Homology

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: KAG7034394.1 (Shikimate kinase 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 597.8 bits (1540), Expect = 5.0e-167
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEVPLFQPHLCSCYV 296
           ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEVPLFQPHLCSCYV
Sbjct: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEVPLFQPHLCSCYV 295

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_022950653.1 (shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022950654.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 555.8 bits (1431), Expect = 2.2e-154
Identity = 277/282 (98.23%), Postives = 278/282 (98.58%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE
Sbjct: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_022977943.1 (shikimate kinase 1, chloroplastic-like [Cucurbita maxima] >XP_022977944.1 shikimate kinase 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 552.4 bits (1422), Expect = 2.4e-153
Identity = 274/282 (97.16%), Postives = 277/282 (98.23%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLS+RIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSVRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFD+DLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDKDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQEERGDAYTNANAKVCLGSLAAKLG SDVCNLTPADIALE
Sbjct: 241 ILQEERGDAYTNANAKVCLGSLAAKLGFSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: XP_023545194.1 (shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023545195.1 shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547.4 bits (1409), Expect = 7.8e-152
Identity = 272/282 (96.45%), Postives = 275/282 (97.52%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLSIRIDSGMFVTKPSGSVRFL PISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLHPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFD+DLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDKDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KIL+KEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILSKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVG DSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGIDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQEERGDAYTNANAKVCLGSLAAKLG SDVCNLTPADIALE
Sbjct: 241 ILQEERGDAYTNANAKVCLGSLAAKLGFSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. NCBI nr
Match: KAG6604235.1 (Shikimate kinase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 531.9 bits (1369), Expect = 3.4e-147
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0


Query: 19  MFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISGLTLET 78
           MFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISGLTLET
Sbjct: 1   MFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISGLTLET 60

Query: 79  ENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLV 138
           ENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLV
Sbjct: 61  ENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLV 120

Query: 139 EQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGI 198
           EQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGI
Sbjct: 121 EQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGI 180

Query: 199 SIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVC 258
           SIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVC
Sbjct: 181 SIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVC 240

Query: 259 LGSLAAKLGLSDVCNLTPADIALE 283
           LGSLAAKLGLSDVCNLTPADIALE
Sbjct: 241 LGSLAAKLGLSDVCNLTPADIALE 264

[Close]

BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q9SJ05 (Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV=2)

HSP 1 Score: 304.7 bits (779), Expect = 1.2e-81
Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N S 
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSA 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
           L LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  L-LETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS + +ERG+AYTNA
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNA 254

Query: 255 NAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           NA+V L ++AAK G  +V +LTP +IA+E
Sbjct: 255 NARVSLENIAAKRGYKNVSDLTPTEIAIE 281

[Close]

BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q00497 (Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 6.5e-77
Identity = 153/284 (53.87%), Postives = 194/284 (68.31%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEA +     LS  I+S   V KPSG +RF +  +++ +   +VS   QP +  +  R V
Sbjct: 1   MEARVSQSLQLSSWINSDKVVRKPSGLLRFSEKWNEKPRHRVVVSCHLQPRKAAHSDRRV 60

Query: 61  SFGASRYRENISGLTLETENFH-PFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTI 120
               S   +N+    LE+  F    DE   LKNK+ EV+ +L+GRC+YLVGMMG GKTT+
Sbjct: 61  QLKVSCSPQNVQASVLESGCFSASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTV 120

Query: 121 GKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIS 180
           G+ILA+ LGY+F D D L+EQ VGG +VAEIF+L GE FFRD ETEVL KLS MH  V+S
Sbjct: 121 GRILAETLGYSFFDCDRLIEQAVGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVS 180

Query: 181 TGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRL 240
           TGGG VVRPINW++M KGIS+WLDVPLEALAKRI   GT SRPLLH ESG+ Y    +RL
Sbjct: 181 TGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRL 240

Query: 241 SILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEV 284
           + L E RG+ Y NA+A+V L ++A K    DVC++TPA+I LEV
Sbjct: 241 TTLMETRGENYANASARVSLENIALKRE-KDVCHITPAEITLEV 283

[Close]

BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q8GY88 (Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 8.3e-72
Identity = 158/285 (55.44%), Postives = 194/285 (68.07%), Query Frame = 0


Query: 3   ANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSF 62
           A +   QY S   D   F  KP GS+R+      + K   +V A     R  +R R+VS 
Sbjct: 4   ATVQRFQYSSWN-DLRNFEGKPRGSLRYNTQRIKEDKRFRVV-ALTLDKRRDHRLRSVS- 63

Query: 63  GASRYRENISGLTLETENF--HPFDED-LLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTI 122
                 +  S   LET +    PFDE+  +LK K+ EV+P+LNGR +YLVGMMGSGKTT+
Sbjct: 64  ------DKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 123

Query: 123 GKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSM-HGFVI 182
           GKI+A+ LGYTF D DTL+EQ + GTSVAEIF+  GE  FR+KETE L+KLS M H  V+
Sbjct: 124 GKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVV 183

Query: 183 STGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH-LESGNAYTKAFR 242
           STGGG V+RPINWKYM KGISIWLDVPLEALA RIAAVGT SRPLLH  ESG+ YT A  
Sbjct: 184 STGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALN 243

Query: 243 RLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           RLS + + RG+AYT A+A+V L ++  KLG   V +LTPA+IA+E
Sbjct: 244 RLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIE 279

[Close]

BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q7X7H9 (Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK3 PE=1 SV=2)

HSP 1 Score: 267.3 bits (682), Expect = 2.0e-70
Identity = 142/246 (57.72%), Postives = 178/246 (72.36%), Query Frame = 0


Query: 44  VSAFRQPLRLPNRCRT----VSFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQP 103
           V  F QPL L +  R+    +    SR    I       + ++  DE L+LK K+ +V P
Sbjct: 34  VEKFAQPLVLGSDRRSCGAKLKVSCSRKPAGID------KTYYSADEALVLKQKAEDVVP 93

Query: 104 HLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFF 163
           +LN RCIYLVGMMGSGKTT+GKILA+ LGY+F DSD LVE+ VG +SVAEIF+LH E FF
Sbjct: 94  YLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGISSVAEIFQLHSEAFF 153

Query: 164 RDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTD 223
           RD E+EVLR LSSMH  V++TGGG V+RPINW YM+KG +IWLDVPL+ALA+RIAAVGT 
Sbjct: 154 RDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDVPLDALARRIAAVGTA 213

Query: 224 SRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADI 283
           SRPLLH ESG+ Y KA+ +L+ L E+R D+Y NA+A+V L  +A K G S+V  LTP+ I
Sbjct: 214 SRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIAVKQGHSNVTTLTPSAI 273

Query: 284 ALEVPL 286
           A+E  L
Sbjct: 274 AIEALL 273

[Close]

BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q5NTH4 (Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK1 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.9e-70
Identity = 130/198 (65.66%), Postives = 158/198 (79.80%), Query Frame = 0


Query: 85  DEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGG 144
           DE LLLK KS EV  +LNGRCIYLVGMMGSGK+T+GKI+++ LGY+F DSD LVEQ VG 
Sbjct: 78  DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGM 137

Query: 145 TSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDV 204
            SVA+IFK+H E FFRD E+ VLR LSSM   V++TGGG V+RP+NWKYM+KG+S+WLDV
Sbjct: 138 PSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 197

Query: 205 PLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAA 264
           PL+ALA+RIA VGT SRPLL   SG+ YT AF +LS+L E+RGDAY NA+ +V L  +A+
Sbjct: 198 PLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLSMLAEQRGDAYANADVRVSLEEIAS 257

Query: 265 KLGLSDVCNLTPADIALE 283
           K G  DV  LTP DIA+E
Sbjct: 258 KQGHDDVSKLTPTDIAIE 275

[Close]

BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1GFH0 (Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111453690 PE=3 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 1.1e-154
Identity = 277/282 (98.23%), Postives = 278/282 (98.58%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE
Sbjct: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1IRL7 (Shikimate kinase OS=Cucurbita maxima OX=3661 GN=LOC111478085 PE=3 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.2e-153
Identity = 274/282 (97.16%), Postives = 277/282 (98.23%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           MEANLGHLQYLS+RIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAF+QPLRLPNRCRTV
Sbjct: 1   MEANLGHLQYLSVRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           SFGAS YRENISGLTLETENFHPFD+DLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDKDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           ILQEERGDAYTNANAKVCLGSLAAKLG SDVCNLTPADIALE
Sbjct: 241 ILQEERGDAYTNANAKVCLGSLAAKLGFSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1KYG4 (Shikimate kinase OS=Cucurbita maxima OX=3661 GN=LOC111497498 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 1.1e-138
Identity = 253/282 (89.72%), Postives = 260/282 (92.20%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           M  N+GHLQ LSIRIDSGMFV KPSGSVRFL PIS Q K  P+VSAF+QPLRL NRCRT+
Sbjct: 1   MTVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           S GAS YRENISGL LETENFHPFD+DLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL Y FSDSDTLVEQEVGGTSVAEIFKL+GE FFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELSYAFSDSDTLVEQEVGGTSVAEIFKLYGEDFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQ GISIWLDVPLEALAKRIAAVGTDSRPLLH ESGN YTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           IL EERGDAYTNAN KVCLGSLAAKLGLSDVCNLTPADIALE
Sbjct: 241 ILLEERGDAYTNANVKVCLGSLAAKLGLSDVCNLTPADIALE 282

[Close]

BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1HHP4 (Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111463570 PE=3 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138
Identity = 250/282 (88.65%), Postives = 259/282 (91.84%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           ME N+GHLQ LSIRIDSGMF  KPSGSVRFL PIS Q K  P+VSAF+QPLRL NRCRT+
Sbjct: 1   MEVNVGHLQNLSIRIDSGMFARKPSGSVRFLPPISKQQKLPPVVSAFQQPLRLSNRCRTI 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           S GAS YRENISGL LETENFHPFD+DLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL Y FSDSDTLVEQEVGGTSVAEIFKL+GE FFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELSYAFSDSDTLVEQEVGGTSVAEIFKLYGEDFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYMQ GISIWLDVPLEALAKRIAAVGTDSRPLLH ESGN YTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           +L EERGDAYTNAN KVCLGSLAAKLGLSDVCNLTP DIA+E
Sbjct: 241 VLLEERGDAYTNANVKVCLGSLAAKLGLSDVCNLTPEDIAIE 282

[Close]

BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A0A0KFZ0 (Shikimate kinase OS=Cucumis sativus OX=3659 GN=Csa_6G487590 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.8e-136
Identity = 250/282 (88.65%), Postives = 258/282 (91.49%), Query Frame = 0


Query: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTV 60
           ME N GHLQ+LSIRID GM V KPSGSVRFLQPISDQ K   LVSAF+QPLRL NRCRTV
Sbjct: 1   MEVNFGHLQHLSIRIDFGMVVRKPSGSVRFLQPISDQQKLPGLVSAFQQPLRLSNRCRTV 60

Query: 61  SFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120
           S   S YRENISGLTLETE  HPFD+DLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVETSCYRENISGLTLETEKSHPFDKDLLLKNKSQEVQPHLNGQCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVIST 180
           KILAKELGYTFSDSDTLVEQEVGGTSVA+IFKLHGE FFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELGYTFSDSDTLVEQEVGGTSVADIFKLHGEVFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLS 240
           GGGIVVRPINWKYM+ GISIWLDVPLEALAKRIAAVGTDSRPLLH ESGNAYTKAFRRLS
Sbjct: 181 GGGIVVRPINWKYMRNGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           +L EERGDAY NANAKVCLGSLA KLGLSDVCNLTPADIA+E
Sbjct: 241 VLLEERGDAYANANAKVCLGSLADKLGLSDVCNLTPADIAVE 282

[Close]

BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.4 (shikimate kinase 1 )

HSP 1 Score: 309.3 bits (791), Expect = 3.3e-84
Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N SG
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSG 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
             LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  ALLETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS + +ERG+AYTNA
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNA 254

Query: 255 NAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           NA+V L ++AAK G  +V +LTP +IA+E
Sbjct: 255 NARVSLENIAAKRGYKNVSDLTPTEIAIE 282

[Close]

BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.1 (shikimate kinase 1 )

HSP 1 Score: 304.7 bits (779), Expect = 8.2e-83
Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N S 
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSA 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
           L LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  L-LETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS + +ERG+AYTNA
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNA 254

Query: 255 NAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           NA+V L ++AAK G  +V +LTP +IA+E
Sbjct: 255 NARVSLENIAAKRGYKNVSDLTPTEIAIE 281

[Close]

BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.2 (shikimate kinase 1 )

HSP 1 Score: 304.7 bits (779), Expect = 8.2e-83
Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N S 
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSA 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
           L LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  L-LETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS + +ERG+AYTNA
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNA 254

Query: 255 NAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           NA+V L ++AAK G  +V +LTP +IA+E
Sbjct: 255 NARVSLENIAAKRGYKNVSDLTPTEIAIE 281

[Close]

BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.5 (shikimate kinase 1 )

HSP 1 Score: 304.7 bits (779), Expect = 8.2e-83
Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N S 
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSA 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
           L LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  L-LETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS + +ERG+AYTNA
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNA 254

Query: 255 NAKVCLGSLAAKLGLSDVCNLTPADIALE 283
           NA+V L ++AAK G  +V +LTP +IA+E
Sbjct: 255 NARVSLENIAAKRGYKNVSDLTPTEIAIE 281

[Close]

BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.3 (shikimate kinase 1 )

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-77
Identity = 154/258 (59.69%), Postives = 190/258 (73.64%), Query Frame = 0


Query: 15  IDSGMFVTKPS-GSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISG 74
           +D      KP  GS+R+ Q +    +   L  A  QP R  ++ R VS   S    N S 
Sbjct: 15  VDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSA 74

Query: 75  LTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSD 134
           L LET + +PFDED +LK K+ EV+P+LNGR +YLVGMMGSGKTT+GK+++K LGYTF D
Sbjct: 75  L-LETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFD 134

Query: 135 SDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKY 194
            DTL+EQ + GTSVAEIF  HGE FFR KET+ L+KLSS +  V+STGGG V+RPINWKY
Sbjct: 135 CDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKY 194

Query: 195 MQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNA 254
           M KGISIWLDVPLEALA RIAAVGTDSRPLLH ESG+AY+ AF+RLS + +ERG+AYTNA
Sbjct: 195 MHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNA 254

Query: 255 NAKVCLGSLAAKLGLSDV 272
           NA+V L S+++   LS +
Sbjct: 255 NARVSLESMSSSSILSAI 270

The following BLAST results are available for this feature:

BLAST of Carg00896 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034394.1	5.0e-167	100.00	Shikimate kinase 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022950653.1	2.2e-154	98.23	shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022950654.1 shik...	[more]
XP_022977943.1	2.4e-153	97.16	shikimate kinase 1, chloroplastic-like [Cucurbita maxima] >XP_022977944.1 shikim...	[more]
XP_023545194.1	7.8e-152	96.45	shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_02354519...	[more]
KAG6604235.1	3.4e-147	100.00	Shikimate kinase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg00896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ05	1.2e-81	60.22	Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV...	[more]
Q00497	6.5e-77	53.87	Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1	[more]
Q8GY88	8.3e-72	55.44	Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV...	[more]
Q7X7H9	2.0e-70	57.72	Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK...	[more]
Q5NTH4	5.9e-70	65.66	Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK...	[more]

BLAST of Carg00896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFH0	1.1e-154	98.23	Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111453690 PE=3 SV=1	[more]
A0A6J1IRL7	1.2e-153	97.16	Shikimate kinase OS=Cucurbita maxima OX=3661 GN=LOC111478085 PE=3 SV=1	[more]
A0A6J1KYG4	1.1e-138	89.72	Shikimate kinase OS=Cucurbita maxima OX=3661 GN=LOC111497498 PE=3 SV=1	[more]
A0A6J1HHP4	4.0e-138	88.65	Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111463570 PE=3 SV=1	[more]
A0A0A0KFZ0	3.8e-136	88.65	Shikimate kinase OS=Cucumis sativus OX=3659 GN=Csa_6G487590 PE=3 SV=1	[more]

BLAST of Carg00896 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21940.4	3.3e-84	60.22	shikimate kinase 1	[more]
AT2G21940.1	8.2e-83	60.22	shikimate kinase 1	[more]
AT2G21940.2	8.2e-83	60.22	shikimate kinase 1	[more]
AT2G21940.5	8.2e-83	60.22	shikimate kinase 1	[more]
AT2G21940.3	2.3e-77	59.69	shikimate kinase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01100	SHIKIMTKNASE	coord: 159..167 score: 56.41 coord: 106..121 score: 59.62 coord: 177..186 score: 67.69 coord: 197..214 score: 32.05 coord: 130..143 score: 37.36
None	No IPR available	PANTHER	PTHR21087	SHIKIMATE KINASE	coord: 55..283
None	No IPR available	PANTHER	PTHR21087:SF20	SHIKIMATE KINASE 1, CHLOROPLASTIC-LIKE ISOFORM X1	coord: 55..283
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 87..287 e-value: 1.3E-64 score: 220.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 104..248
IPR031322	Shikimate kinase/gluconokinase	PFAM	PF01202	SKI	coord: 112..261 e-value: 1.1E-43 score: 149.1
IPR023000	Shikimate kinase, conserved site	PROSITE	PS01128	SHIKIMATE_KINASE	coord: 160..185
IPR000623	Shikimate kinase/Threonine synthase-like 1	HAMAP	MF_00109	Shikimate_kinase	coord: 103..276 score: 23.977673
IPR000623	Shikimate kinase/Threonine synthase-like 1	CDD	cd00464	SK	coord: 106..244 e-value: 1.73068E-55 score: 174.666

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00896-RA	Carg00896-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008652	cellular amino acid biosynthetic process
biological_process	GO:0009423	chorismate biosynthetic process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004765	shikimate kinase activity