Carg00896 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAATCAAGTTAGCTGAGTAACAGAGGTGGTTTGGTGGGACTATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGTAACATTGGACTTCCAGTGTGATTAGAAAAGTGCGTTTTTCTTCGTCGTTCATCCTCATGTCTTCCTTTCGTAAGGACTATGGATTTTATTTTATTTTTTGGTTTGGTGAATTACTTTGCATTCTTTTTCGGTCCTAAATTAATTTCCATTTCTCTGAAGAATCAAATATTATGAAAGCAGGAACTACGCAGTATGATCGAGTAATTTGCTGAAGCAGTCTAATTCTACATCTATGGCGTTTTGCTATTTTGAGTTTTTCTGAAACTTTATACAGAACCCTTTTTTACATTCTTAAAACGTCAACATTTTTTCACATTATCTTGCTGAGCGGATCCACATTTTTTCACATTATCTTTCGTATGATACCATTAGTGATTTTGTTGCCATTAGAAAGGTTAATAGTCCCAGTTTAAAACATGACTTTTGTTTTATTATTTTGTTGTTGTTCTTGTCTACAGCTTGCGAGTAACCAATTGATCTTTGGCTTATTGCTTTCAATGCTCCTTTTGTAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGGTCAAGCAGAATTTTTGTTGCATGTTTACATCAACCTTAATTAGAGTTGTTGTGATGTGGAATATGTGATTTTCTTTCTAATTCATGTTAAGCTAAACTAGAATTTGAAAAAAAAAAAAAAAAAAAAAGTGCAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGTTAGTGTGTGTTCTTTTTTACACTTTATAATTGGCAATTCTTCTGCTTAGATACTAATCTATCAGAATGCTACTTTGCAGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGGTTTGCGTTATTTAATTGCTAGCTAGCACAGGATTTTTGTTTGAATTTTTACAAACAAGGAAATAAAGAACATAGTGGAAGAAAAATTAATGCCTAATTTCCTTAACATCACGTCACTATTCCAGCATCGAAGGTCTATTCAAAGCTGAACTGGATGGAAGAACAGTTTTGAAGTGATATTACATGCAATCTATGATTTTTACTATGCTTTCTGACAGAAAATTATGGCATTCGTAATTTGCATCCATTTTTTAGCACAAGTATGTTAATGCAAGTTACTTGCTTTTGTATTAATTATGCATTACATATCTGGATCAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGGTTAGTTAACCTGCAATTTGACCATCCTTCGCATCTGTGAAGAGGACGGTTATTACTATCTACTGTATTTGATGTTTTTATGAACCGAGTGTAATGTGGGAAGCACAATGCTACCATGATAATTTTCATTGAAGTGAATATTTTAATTTTCTAAAGATGTTGGAAGGGGCAAATGTCAGCAATGTGATTTTCCTTCTGCTTCTATAGAAATTGAAAGGGATCTGGATTTATAATTGGGGATATCCAAAAAGCCTGATGAATTTTTTCAATTGCTATGGTTTTAAGCAGCTAAGTAAAATGTTTTGCAACTCTAAGCTGTTATAGCCGATCAAAGTTAGTGACAGTGATTTTTCTGTTAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGTAATTTGTTTGGACACTCACACTTTCTAATTGTTATTTGGTTCTCTGTTTTTTTTTTTTTTGTTAAGTGGGACTCGTCCTATTTGATTGTAGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGTGGTGAATCATTCTCTGTGAGGGAAACATTTATCCATAAACTATTTACTTTTCTTTATCAAGGGTTTTAGGGATGTTGCTTTTTGGTGTCGAACTCGTGATGCTTGATCCTAGCACATCTTTTAATCTGCTGATTCTCATTCAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTATGAAATAAATAAATCTTGATACTCCTTTGTCATTCTGGAAATATAGAAGTAACAAACTTCGCGTTGGAATCCATAAATCTACAGCGTTTGTTTATTGTTCCTGTATCTTCTGTGTTAAGGAGGTGACTAAAACTTAAAATCAAGTTGTTTTTGTTAACTTGCAGGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGATTAAAAAAATCTGACCTTTCAATAAAGAGAAAACCTTCTATATTAAAAAATGCTTGAGTTTTTAAGTGTATTCTTTCCAGGCGCTTGTACAAATTCAAACATTCCTAGAACAGGAAGATGGTTATTCTACTAGTTAAGACTGCAAATGTTCAATGTCCAGAGCTTTAAGCCTCTCAAGCATGGAAGAAAGCCTTGCTTCGACTCCTGGCAATTGTATAATATGGTGGGTGGTAAGTACTTCTTTGAACTTGATGATCTATGTCAATGTTAGTAAGTGTATCTCTCTGTAAATTTTGTGGTCGATAAAACTTGTGTGTACATGCACATAGTATGTATGACTATTGCATTATTTGTAGATTGTTGTTTGATTATCATCATATTTCTGTATGCATGTATAATATTCCATTGCATCTGAAATAAGCATCATTGTTTGATCACCATTTTATTTTTGTATGTTTGTGTGGTCCATTGCGTTTGAAATATAACATCTTGTTGGCAATTTTGTTTTTATTGAATTAAAAAGGTGTCATTTTAATCGCGTATGCATGTAGATTTCCTTAGGAGTTGAAAAATCGAAACATTTATCAAATTTTGTCATTCTTTCTGTCATAAAGAACAATTTCATGAACTTATATAAAGGTTAGAAATGCAACATTTCTTAATGGGTTGGCCATGAATTGAGATCATCATCTATGTTACCTACCAGCTGAAATATGATATCTGATGACAAAATGGGGGCAGCTCGACAATTCTACTGGCTGGGCCTTTCATTTAGTTGCCCGCTTCCAATATGATTAGACATCAATTATTGAGTTATGTTATGTTATGTGTTATGTCCCCTTCCCTCTTGATGTTAGTCTTAATCCCTCGCTTCTGCACATTCTCTCTTCAATGGAGAAGTTGGTCGGGCTAATTTTTCTTTAGCATCGTTCTATAATAATCCCTATCAACTCCAAACCATGTTTCAGATTTATCAAAAAA TAATCAAGTTAGCTGAGTAACAGAGGTGGTTTGGTGGGACTATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGATTAAAAAAATCTGACCTTTCAATAAAGAGAAAACCTTCTATATTAAAAAATGCTTGAGTTTTTAAGTGTATTCTTTCCAGGCGCTTGTACAAATTCAAACATTCCTAGAACAGGAAGATGGTTATTCTACTAGTTAAGACTGCAAATGTTCAATGTCCAGAGCTTTAAGCCTCTCAAGCATGGAAGAAAGCCTTGCTTCGACTCCTGGCAATTGTATAATATGGTGGGTGGTAAGTACTTCTTTGAACTTGATGATCTATGTCAATGTTAGTAAGTGTATCTCTCTGTAAATTTTGTGGTCGATAAAACTTGTGTGTACATGCACATAGTATGTATGACTATTGCATTATTTGTAGATTGTTGTTTGATTATCATCATATTTCTGTATGCATGTATAATATTCCATTGCATCTGAAATAAGCATCATTGTTTGATCACCATTTTATTTTTGTATGTTTGTGTGGTCCATTGCGTTTGAAATATAACATCTTGTTGGCAATTTTGTTTTTATTGAATTAAAAAGGTGTCATTTTAATCGCGTATGCATGTAGATTTCCTTAGGAGTTGAAAAATCGAAACATTTATCAAATTTTGTCATTCTTTCTGTCATAAAGAACAATTTCATGAACTTATATAAAGGTTAGAAATGCAACATTTCTTAATGGGTTGGCCATGAATTGAGATCATCATCTATGTTACCTACCAGCTGAAATATGATATCTGATGACAAAATGGGGGCAGCTCGACAATTCTACTGGCTGGGCCTTTCATTTAGTTGCCCGCTTCCAATATGATTAGACATCAATTATTGAGTTATGTTATGTTATGTGTTATGTCCCCTTCCCTCTTGATGTTAGTCTTAATCCCTCGCTTCTGCACATTCTCTCTTCAATGGAGAAGTTGGTCGGGCTAATTTTTCTTTAGCATCGTTCTATAATAATCCCTATCAACTCCAAACCATGTTTCAGATTTATCAAAAAA ATGGAGGCCAACTTAGGACATTTGCAGTATCTATCAATCCGGATTGATTCCGGAATGTTTGTGACGAAACCGAGTGGTTCGGTCCGATTTCTTCAGCCAATTTCTGATCAGCACAAGCCTCTACCTCTGGTTTCAGCTTTTCGGCAACCTCTGAGACTTCCGAATCGATGCAGGACGGTGTCTTTTGGGGCCTCCCGCTATCGTGAGAATATTTCAGGGCTGACATTGGAAACTGAAAACTTTCATCCTTTCGACGAAGATCTCCTTCTGAAGAACAAGTCACATGAGGTCCAGCCCCATCTAAATGGACGATGCATATATCTAGTTGGAATGATGGGTTCTGGAAAGACGACCATAGGCAAGATTTTGGCGAAAGAATTGGGTTACACATTTTCTGACAGTGATACATTGGTGGAACAAGAAGTTGGTGGAACTTCAGTGGCAGAAATTTTCAAGCTTCATGGCGAAGGCTTTTTCAGAGATAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTTATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAAGGGGATTAGCATCTGGCTAGATGTGCCGCTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTGGGTACCGACTCTCGCCCCCTCTTGCACCTTGAGTCAGGCAATGCCTACACAAAGGCTTTCAGGCGATTGTCAATTCTTCAGGAGGAGAGGGGTGATGCATATACCAACGCCAATGCCAAAGTTTGTCTAGGAAGTCTTGCAGCCAAGCTGGGGTTATCAGATGTATGTAATCTGACGCCTGCAGATATTGCTTTAGAGGTTCCTCTCTTTCAGCCTCATCTTTGTTCTTGCTATGTTTGA MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFRQPLRLPNRCRTVSFGASRYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIGKILAKELGYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHLESGNAYTKAFRRLSILQEERGDAYTNANAKVCLGSLAAKLGLSDVCNLTPADIALEVPLFQPHLCSCYV Homology
BLAST of Carg00896 vs. NCBI nr
Match: KAG7034394.1 (Shikimate kinase 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 597.8 bits (1540), Expect = 5.0e-167 Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
BLAST of Carg00896 vs. NCBI nr
Match: XP_022950653.1 (shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022950654.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 555.8 bits (1431), Expect = 2.2e-154 Identity = 277/282 (98.23%), Postives = 278/282 (98.58%), Query Frame = 0
BLAST of Carg00896 vs. NCBI nr
Match: XP_022977943.1 (shikimate kinase 1, chloroplastic-like [Cucurbita maxima] >XP_022977944.1 shikimate kinase 1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 552.4 bits (1422), Expect = 2.4e-153 Identity = 274/282 (97.16%), Postives = 277/282 (98.23%), Query Frame = 0
BLAST of Carg00896 vs. NCBI nr
Match: XP_023545194.1 (shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023545195.1 shikimate kinase 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 547.4 bits (1409), Expect = 7.8e-152 Identity = 272/282 (96.45%), Postives = 275/282 (97.52%), Query Frame = 0
BLAST of Carg00896 vs. NCBI nr
Match: KAG6604235.1 (Shikimate kinase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 531.9 bits (1369), Expect = 3.4e-147 Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q9SJ05 (Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV=2) HSP 1 Score: 304.7 bits (779), Expect = 1.2e-81 Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q00497 (Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 6.5e-77 Identity = 153/284 (53.87%), Postives = 194/284 (68.31%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q8GY88 (Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 8.3e-72 Identity = 158/285 (55.44%), Postives = 194/285 (68.07%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q7X7H9 (Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK3 PE=1 SV=2) HSP 1 Score: 267.3 bits (682), Expect = 2.0e-70 Identity = 142/246 (57.72%), Postives = 178/246 (72.36%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy Swiss-Prot
Match: Q5NTH4 (Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK1 PE=1 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 5.9e-70 Identity = 130/198 (65.66%), Postives = 158/198 (79.80%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1GFH0 (Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111453690 PE=3 SV=1) HSP 1 Score: 555.8 bits (1431), Expect = 1.1e-154 Identity = 277/282 (98.23%), Postives = 278/282 (98.58%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1IRL7 (Shikimate kinase OS=Cucurbita maxima OX=3661 GN=LOC111478085 PE=3 SV=1) HSP 1 Score: 552.4 bits (1422), Expect = 1.2e-153 Identity = 274/282 (97.16%), Postives = 277/282 (98.23%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1KYG4 (Shikimate kinase OS=Cucurbita maxima OX=3661 GN=LOC111497498 PE=3 SV=1) HSP 1 Score: 502.7 bits (1293), Expect = 1.1e-138 Identity = 253/282 (89.72%), Postives = 260/282 (92.20%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A6J1HHP4 (Shikimate kinase OS=Cucurbita moschata OX=3662 GN=LOC111463570 PE=3 SV=1) HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138 Identity = 250/282 (88.65%), Postives = 259/282 (91.84%), Query Frame = 0
BLAST of Carg00896 vs. ExPASy TrEMBL
Match: A0A0A0KFZ0 (Shikimate kinase OS=Cucumis sativus OX=3659 GN=Csa_6G487590 PE=3 SV=1) HSP 1 Score: 494.2 bits (1271), Expect = 3.8e-136 Identity = 250/282 (88.65%), Postives = 258/282 (91.49%), Query Frame = 0
BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.4 (shikimate kinase 1 ) HSP 1 Score: 309.3 bits (791), Expect = 3.3e-84 Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0
BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.1 (shikimate kinase 1 ) HSP 1 Score: 304.7 bits (779), Expect = 8.2e-83 Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0
BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.2 (shikimate kinase 1 ) HSP 1 Score: 304.7 bits (779), Expect = 8.2e-83 Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0
BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.5 (shikimate kinase 1 ) HSP 1 Score: 304.7 bits (779), Expect = 8.2e-83 Identity = 162/269 (60.22%), Postives = 200/269 (74.35%), Query Frame = 0
BLAST of Carg00896 vs. TAIR 10
Match: AT2G21940.3 (shikimate kinase 1 ) HSP 1 Score: 286.6 bits (732), Expect = 2.3e-77 Identity = 154/258 (59.69%), Postives = 190/258 (73.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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