Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACGTATTGTCATTCAACTCTCTCAAGTCTGAACTTCTTGTTTCCGTTATCCTATTGTTGTTCGTCCTTCTCCATTTCATGATTGAAACTGTGAGAGTTTGTGATTCGATTTTCTCATCTCTTTCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGGTGTTAAGCCTACGCCATTTGAATCGCCATTTTTTCAAGTCTGTGATCTGATTTTGAGTCTTACATTCTGGCGTTCTACTGTCGATTGTTTTTCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAGGACCTATTATTATATTTGCGCAACTGAAATTTAGTTCGTCTGATATTTTTGTTGAATCATTTCTACACTGAAGTTTGAAGTAGTTCGGGATAGAATGAATTTACTGGCAGGCGTCATGTCTGTGGATTAGCAGTTTATCCACATATTCATGGCATTTACTTCTTATTTTGAAGAACTTAAACGAGCTTGATAGACATTCTTTAAATAATTGATCGAAGTCAAGAGATTTATGGAAACTACTTACATTGACATATCACGATTTTCCACTCCTTAATGAAGTTATGATCGTTATCAGTATTCGCCTTTAGATTCTTGAACATTGCTAGTTCATATTTTTCATCATATCATTTAGCCCCCTTGCCTTCAATAACGTTTGGGTTTATAGGAATCTGATCAAATATTTTCTTATAGATAGAATATTTCTGCCGAAGTCCGTCTTTCTCTTTATTTAATCGATTTTGTTACTTCAACCATTGTTTATACAATGGGGGAATTGGTAAGAGGTTAGAAGACTGAGGAACAAAACTTGGACCCGAAGTTGGTGTAGCTTGATTAGTTTCGGTAGAGCCAATTCATAAATATGTATGGCTCAAGTATACAATTCATAACTGACCTTCATTTACAATGGACAATTATCAGAATTTCCTAGCTTACCCTAGTAGAGAGACTACAAATACACAGTTCATAATCATACAATTCTACAGAACTATATGTTCTGAAAGAGGACATTCTTTGTGAGACTCTTCAATAAAGTACTTAGAACAATAGTTGTCCTAACTGAATAATCTTTGTCAATTGCCCGTGGGATGTCGTAGCTGTGCCTTTTCTTGTCATTATAGTGGGTGGAAGCAGAGAACTTGGGTGTACCTAGGCGCTCATTTGCAGCTCATCACCATATTTTAGAACCCTAACCTTATTCAATGTGGCTGCCATGCCATGGTGTGAAGTAAACTGCATTTGTTGCATTTGTGTGGATGTCCAATAGGTAGGCCCCTGTTTGATTGCCCAACAAAATAGTTGTTTAGTGAATAACTCAACCTATGACTTACTTAGAACCATCCCAAGCTCAGAGAAGAAAATATTTTTGATGAAGTGAAAGCAAACAATGAATGCTTCAACAGGTTTGAAGTGAGAATAGTTTGTTTCGATAATCGAGAGAGAGTGATGGAAGGAATAGACTATAGAAAGAAGGATCAGTCTCTGTTGCCATATGGGGATGATTGGATTTTGATGCCCTAATCTCAATTCAATCGACCAAGTTCGTTCATCGGGTTATCCTTTGTTGGCTCCTTGATAGGATCTAACCGAAATTAGTTTTTTTTTAATCTTTGTTTTTGCCTATTAGATTGGATTTGGCAAATTAA
mRNA sequence
ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA
Coding sequence (CDS)
ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA
Protein sequence
MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN
Homology
BLAST of Carg00430 vs. NCBI nr
Match:
KAG7031772.1 (hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
Query: 1 MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN 60
MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN
Sbjct: 1 MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN 59
BLAST of Carg00430 vs. NCBI nr
Match:
KAF5748142.1 (hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii])
HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0
Query: 2 VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH 49
+PVSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Sbjct: 51 LPVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97
BLAST of Carg00430 vs. NCBI nr
Match:
VVA11576.1 (unknown partial [Prunus dulcis])
HSP 1 Score: 70.1 bits (170), Expect = 7.3e-09
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0
Query: 4 VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
V QD NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+AQALA HQAR LR
Sbjct: 72 VPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALAPHQARFLR 122
BLAST of Carg00430 vs. NCBI nr
Match:
ACU14423.1 (unknown, partial [Glycine max])
HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0
Query: 4 VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
V+QD QNQEE EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74
BLAST of Carg00430 vs. NCBI nr
Match:
RZC06088.1 (60S ribosomal protein L39 [Glycine soja])
HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0
Query: 3 PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL 54
PV+QD QNQEE EEDEAEQA+P LDP E+RQ++Q+QR+A +LASHQA +L
Sbjct: 61 PVAQDIQNQEEVGEEDEAEQAHPLLDPHEDRQHHQVQREAPSLASHQAWIL 111
BLAST of Carg00430 vs. ExPASy TrEMBL
Match:
A0A7J7DP31 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0
Query: 2 VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH 49
+PVSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Sbjct: 51 LPVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97
BLAST of Carg00430 vs. ExPASy TrEMBL
Match:
A0A5E4E8H2 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0
Query: 4 VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
V QD NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+AQALA HQAR LR
Sbjct: 72 VPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALAPHQARFLR 122
BLAST of Carg00430 vs. ExPASy TrEMBL
Match:
C6SYV0 (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0
Query: 4 VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
V+QD QNQEE EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74
BLAST of Carg00430 vs. ExPASy TrEMBL
Match:
A0A445K5S6 (60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1)
HSP 1 Score: 68.9 bits (167), Expect = 7.9e-09
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0
Query: 3 PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL 54
PV+QD QNQEE EEDEAEQA+P LDP E+RQ++Q+QR+A +LASHQA +L
Sbjct: 61 PVAQDIQNQEEVGEEDEAEQAHPLLDPHEDRQHHQVQREAPSLASHQAWIL 111
BLAST of Carg00430 vs. ExPASy TrEMBL
Match:
A0A7J7BX51 (Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G01007 PE=3 SV=1)
HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0
Query: 2 VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALAS 48
V VSQD Q+QEEAREEDEAEQA P+LDP ENRQ+ QIQR+AQALAS
Sbjct: 5 VAVSQDLQDQEEAREEDEAEQANPSLDPHENRQHNQIQREAQALAS 50
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7031772.1 | 2.2e-21 | 100.00 | hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAF5748142.1 | 4.3e-09 | 78.72 | hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii] | [more] |
VVA11576.1 | 7.3e-09 | 72.55 | unknown partial [Prunus dulcis] | [more] |
ACU14423.1 | 9.5e-09 | 70.59 | unknown, partial [Glycine max] | [more] |
RZC06088.1 | 1.6e-08 | 68.63 | 60S ribosomal protein L39 [Glycine soja] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A7J7DP31 | 2.1e-09 | 78.72 | Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 ... | [more] |
A0A5E4E8H2 | 3.5e-09 | 72.55 | Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1 | [more] |
C6SYV0 | 4.6e-09 | 70.59 | Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1 | [more] |
A0A445K5S6 | 7.9e-09 | 68.63 | 60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1 | [more] |
A0A7J7BX51 | 3.0e-08 | 80.43 | Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G010... | [more] |
Match Name | E-value | Identity | Description | |