Carg00430 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg00430
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L39
Location	Carg_Chr04: 7252796 .. 7254620 (+)
RNA-Seq Expression	Carg00430
Synteny	Carg00430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGTATTGTCATTCAACTCTCTCAAGTCTGAACTTCTTGTTTCCGTTATCCTATTGTTGTTCGTCCTTCTCCATTTCATGATTGAAACTGTGAGAGTTTGTGATTCGATTTTCTCATCTCTTTCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGGTGTTAAGCCTACGCCATTTGAATCGCCATTTTTTCAAGTCTGTGATCTGATTTTGAGTCTTACATTCTGGCGTTCTACTGTCGATTGTTTTTCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAGGACCTATTATTATATTTGCGCAACTGAAATTTAGTTCGTCTGATATTTTTGTTGAATCATTTCTACACTGAAGTTTGAAGTAGTTCGGGATAGAATGAATTTACTGGCAGGCGTCATGTCTGTGGATTAGCAGTTTATCCACATATTCATGGCATTTACTTCTTATTTTGAAGAACTTAAACGAGCTTGATAGACATTCTTTAAATAATTGATCGAAGTCAAGAGATTTATGGAAACTACTTACATTGACATATCACGATTTTCCACTCCTTAATGAAGTTATGATCGTTATCAGTATTCGCCTTTAGATTCTTGAACATTGCTAGTTCATATTTTTCATCATATCATTTAGCCCCCTTGCCTTCAATAACGTTTGGGTTTATAGGAATCTGATCAAATATTTTCTTATAGATAGAATATTTCTGCCGAAGTCCGTCTTTCTCTTTATTTAATCGATTTTGTTACTTCAACCATTGTTTATACAATGGGGGAATTGGTAAGAGGTTAGAAGACTGAGGAACAAAACTTGGACCCGAAGTTGGTGTAGCTTGATTAGTTTCGGTAGAGCCAATTCATAAATATGTATGGCTCAAGTATACAATTCATAACTGACCTTCATTTACAATGGACAATTATCAGAATTTCCTAGCTTACCCTAGTAGAGAGACTACAAATACACAGTTCATAATCATACAATTCTACAGAACTATATGTTCTGAAAGAGGACATTCTTTGTGAGACTCTTCAATAAAGTACTTAGAACAATAGTTGTCCTAACTGAATAATCTTTGTCAATTGCCCGTGGGATGTCGTAGCTGTGCCTTTTCTTGTCATTATAGTGGGTGGAAGCAGAGAACTTGGGTGTACCTAGGCGCTCATTTGCAGCTCATCACCATATTTTAGAACCCTAACCTTATTCAATGTGGCTGCCATGCCATGGTGTGAAGTAAACTGCATTTGTTGCATTTGTGTGGATGTCCAATAGGTAGGCCCCTGTTTGATTGCCCAACAAAATAGTTGTTTAGTGAATAACTCAACCTATGACTTACTTAGAACCATCCCAAGCTCAGAGAAGAAAATATTTTTGATGAAGTGAAAGCAAACAATGAATGCTTCAACAGGTTTGAAGTGAGAATAGTTTGTTTCGATAATCGAGAGAGAGTGATGGAAGGAATAGACTATAGAAAGAAGGATCAGTCTCTGTTGCCATATGGGGATGATTGGATTTTGATGCCCTAATCTCAATTCAATCGACCAAGTTCGTTCATCGGGTTATCCTTTGTTGGCTCCTTGATAGGATCTAACCGAAATTAGTTTTTTTTTAATCTTTGTTTTTGCCTATTAGATTGGATTTGGCAAATTAA

mRNA sequence

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA

Coding sequence (CDS)

ATGGTACCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGATTGGATTTGGCAAATTAA

Protein sequence

MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN

Homology

[Close]

BLAST of Carg00430 vs. NCBI nr
Match: KAG7031772.1 (hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN 60
          MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN
Sbjct: 1  MVPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLRLDLAN 59

[Close]

BLAST of Carg00430 vs. NCBI nr
Match: KAF5748142.1 (hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii])

HSP 1 Score: 70.9 bits (172), Expect = 4.3e-09
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 2  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH 49
          +PVSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Sbjct: 51 LPVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

[Close]

BLAST of Carg00430 vs. NCBI nr
Match: VVA11576.1 (unknown partial [Prunus dulcis])

HSP 1 Score: 70.1 bits (170), Expect = 7.3e-09
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 4   VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
           V QD  NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+AQALA HQAR LR
Sbjct: 72  VPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALAPHQARFLR 122

[Close]

BLAST of Carg00430 vs. NCBI nr
Match: ACU14423.1 (unknown, partial [Glycine max])

HSP 1 Score: 69.7 bits (169), Expect = 9.5e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74

[Close]

BLAST of Carg00430 vs. NCBI nr
Match: RZC06088.1 (60S ribosomal protein L39 [Glycine soja])

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 3   PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL 54
           PV+QD QNQEE  EEDEAEQA+P LDP E+RQ++Q+QR+A +LASHQA +L
Sbjct: 61  PVAQDIQNQEEVGEEDEAEQAHPLLDPHEDRQHHQVQREAPSLASHQAWIL 111

[Close]

BLAST of Carg00430 vs. ExPASy TrEMBL
Match: A0A7J7DP31 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-09
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 2  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASH 49
          +PVSQD Q+QEEAREEDEAEQAYP LDP ENRQY Q+Q +AQALAS+
Sbjct: 51 LPVSQDLQDQEEAREEDEAEQAYPPLDPHENRQYNQVQCEAQALASY 97

[Close]

BLAST of Carg00430 vs. ExPASy TrEMBL
Match: A0A5E4E8H2 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 4   VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
           V QD  NQEEA EEDEAEQA+P+LDP E+RQ++Q+QR+AQALA HQAR LR
Sbjct: 72  VPQDLHNQEEAGEEDEAEQAHPSLDPFEDRQHHQVQRQAQALAPHQARFLR 122

[Close]

BLAST of Carg00430 vs. ExPASy TrEMBL
Match: C6SYV0 (Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-09
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 4  VSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVLR 55
          V+QD QNQEE  EEDEAEQAYP LDP E+RQ++Q+QR+A +LASHQA +LR
Sbjct: 24 VAQDIQNQEEVGEEDEAEQAYPLLDPHEDRQHHQVQREAPSLASHQAWILR 74

[Close]

BLAST of Carg00430 vs. ExPASy TrEMBL
Match: A0A445K5S6 (60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.9e-09
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 3   PVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALASHQARVL 54
           PV+QD QNQEE  EEDEAEQA+P LDP E+RQ++Q+QR+A +LASHQA +L
Sbjct: 61  PVAQDIQNQEEVGEEDEAEQAHPLLDPHEDRQHHQVQREAPSLASHQAWIL 111

[Close]

BLAST of Carg00430 vs. ExPASy TrEMBL
Match: A0A7J7BX51 (Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G01007 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-08
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 2  VPVSQDFQNQEEAREEDEAEQAYPALDPSENRQYYQIQRKAQALAS 48
          V VSQD Q+QEEAREEDEAEQA P+LDP ENRQ+ QIQR+AQALAS
Sbjct: 5  VAVSQDLQDQEEAREEDEAEQANPSLDPHENRQHNQIQREAQALAS 50

The following BLAST results are available for this feature:

BLAST of Carg00430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031772.1	2.2e-21	100.00	hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAF5748142.1	4.3e-09	78.72	hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii]	[more]
VVA11576.1	7.3e-09	72.55	unknown partial [Prunus dulcis]	[more]
ACU14423.1	9.5e-09	70.59	unknown, partial [Glycine max]	[more]
RZC06088.1	1.6e-08	68.63	60S ribosomal protein L39 [Glycine soja]	[more]

BLAST of Carg00430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg00430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7DP31	2.1e-09	78.72	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G00092 ...	[more]
A0A5E4E8H2	3.5e-09	72.55	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B001478 PE=4 SV=1	[more]
C6SYV0	4.6e-09	70.59	Uncharacterized protein (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
A0A445K5S6	7.9e-09	68.63	60S ribosomal protein L39 OS=Glycine soja OX=3848 GN=D0Y65_013914 PE=3 SV=1	[more]
A0A7J7BX51	3.0e-08	80.43	Aspartate aminotransferase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G010...	[more]

BLAST of Carg00430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00430-RA	Carg00430-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006520	cellular amino acid metabolic process
biological_process	GO:0120029	proton export across plasma membrane
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity
molecular_function	GO:0008553	P-type proton-exporting transporter activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0003735	structural constituent of ribosome