CaUC10G189440 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC10G189440
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionUnknown protein
LocationCiama_Chr10: 23277089 .. 23277919 (+)
RNA-Seq ExpressionCaUC10G189440
SyntenyCaUC10G189440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGCCAATCATCAGGCTGAGTGAGTGTGAGCTGCATTTTTGGCGCTTGACGCCTTATGAACTTGAGCCCTTCAAACTTTCGCACAGGTGATTTCAGTGGCTACCATCAACAATGTATCAATCAGTGAAAGGAAAGCAGAGATCCAAATTTTAATCAAGTTTAGTTCATTGTCATTGATATTGTTCTCAACAGATTAGGGGAACTATGAAAATATCACACCGCACGATGATGCTCAAAGTACATTATCACTGATATTATAATGCTTGAACAAGAAAATGCCATTAATGTTGCTTGAAGAAAATTTGATGATAACAAAATGAAGTACCAAGTACGATTTGAATATAAATAGATTGAACTCTATCGATAATAAAAGCATGTACTTGGAAGGGAAGGACCAAAGTCTTTGTCATAGTAAAATCCAGAGACAACCTTGAGCCTCCTTTAAAACGATTTTTCTTCTGTTCAAATGAAAATATAAAATTAGAGATAACAGATGCATAACCAGCACCGCCATCGTTGATCTGTTTGCGTAGGTTACCTATCGCCGCCGAAGCTCGTTGGCCGGAGAAGAAGAACTGGGAGACGTCGAACGAGCTGTTCGTAGGTCACTTGCCACTTGTAGATCTGCTGCCGCGAGGAGTTGAATCCGCCGGAGTAGGAAGAACCACCAACGTCCGGCTGTTCGTGGCTGACCGCCTGAGGATCGCCGGAGACTGATGGATGCGCCGTCGGGTCTGGCCGGAGAATTACTAGAGAGGGGTGACGGGTGCTTAGAGCTTGAGGGGGATAGGAAGGTTAATTAAATAAATGAGACAAAATTTAGGC

mRNA sequence

ATGAAGATGCCAATCATCAGGCTGAGTGAGTGTGAGCTGCATTTTTGGCGCTTGACGCCTTATGAACTTGAGCCCTTCAAACTTTCGCACAGGTTACCTATCGCCGCCGAAGCTCGTTGGCCGGAGAAGAAGAACTGGGAGACGTCGAACGAGCTGTTCGTAGGTCACTTGCCACTTGTAGATCTGCTGCCGCGAGGAGTTGAATCCGCCGGAGTAGGAAGAACCACCAACGTCCGGCTGTTCGTGGCTGACCGCCTGAGGATCGCCGGAGACTGATGGATGCGCCGTCGGGTCTGGCCGGAGAATTACTAGAGAGGGGTGACGGGTGCTTAGAGCTTGAGGGGGATAGGAAGGTTAATTAAATAAATGAGACAAAATTTAGGC

Coding sequence (CDS)

ATGAAGATGCCAATCATCAGGCTGAGTGAGTGTGAGCTGCATTTTTGGCGCTTGACGCCTTATGAACTTGAGCCCTTCAAACTTTCGCACAGGTTACCTATCGCCGCCGAAGCTCGTTGGCCGGAGAAGAAGAACTGGGAGACGTCGAACGAGCTGTTCGTAGGTCACTTGCCACTTGTAGATCTGCTGCCGCGAGGAGTTGAATCCGCCGGAGTAGGAAGAACCACCAACGTCCGGCTGTTCGTGGCTGACCGCCTGAGGATCGCCGGAGACTGA

Protein sequence

MKMPIIRLSECELHFWRLTPYELEPFKLSHRLPIAAEARWPEKKNWETSNELFVGHLPLVDLLPRGVESAGVGRTTNVRLFVADRLRIAGD
Homology
[Close]
BLAST of CaUC10G189440 vs. NCBI nr
Match: KGN59553.1 (hypothetical protein Csa_000968 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-05
Identity = 37/64 (57.81%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 31 RLPIAAEARWPEKKN-WETSNELFVGHLPLVDLLPRGVESAGVGRTTNVRLFVAD--RLR 90
          RLP A  A  PEKKN WETS E FV           G ESAGVGR   VRLFV +  RLR
Sbjct: 10 RLPSAGAACCPEKKNKWETSQEPFV-----------GTESAGVGRARTVRLFVIELGRLR 62

Query: 91 IAGD 92
          IAGD
Sbjct: 70 IAGD 62

[Close]
BLAST of CaUC10G189440 vs. ExPASy TrEMBL
Match: A0A0A0LCR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824980 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.7e-05
Identity = 37/64 (57.81%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 31 RLPIAAEARWPEKKN-WETSNELFVGHLPLVDLLPRGVESAGVGRTTNVRLFVAD--RLR 90
          RLP A  A  PEKKN WETS E FV           G ESAGVGR   VRLFV +  RLR
Sbjct: 10 RLPSAGAACCPEKKNKWETSQEPFV-----------GTESAGVGRARTVRLFVIELGRLR 62

Query: 91 IAGD 92
          IAGD
Sbjct: 70 IAGD 62

The following BLAST results are available for this feature:
BLAST of CaUC10G189440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59553.17.5e-0557.81hypothetical protein Csa_000968 [Cucumis sativus][more]
BLAST of CaUC10G189440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC10G189440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCR73.7e-0557.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824980 PE=4 SV=1[more]
BLAST of CaUC10G189440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC10G189440.1CaUC10G189440.1mRNA