CaUC10G188090 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC10G188090
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr10: 20158921 .. 20159217 (-)
RNA-Seq Expression	CaUC10G188090
Synteny	CaUC10G188090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAGCAAGAAGCTGGTCGTTTTAGCAATGGCGGTCGTGCTACTTGTGGGCGATTCAGTTGGAGGCACCAACACGTTCACCATTGGCGAGGCGATGGAAGTCAGTTCCGATGAGGTCAACCGAGTGGATAATTCAGAGATGATGGCTGTCCCAAGAAAAATAATGTTGAAAAATAGAGTTGGAGTATGTCTGTTTGTAGGGAAGCCATGCTGGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTCTTCCACTAATAGATGCGGGGTACTGTGGGTTTCTCTGA

mRNA sequence

ATGGAGATGAGCAAGAAGCTGGTCGTTTTAGCAATGGCGGTCGTGCTACTTGTGGGCGATTCAGTTGGAGGCACCAACACGTTCACCATTGGCGAGGCGATGGAAGTCAGTTCCGATGAGGTCAACCGAGTGGATAATTCAGAGATGATGGCTGTCCCAAGAAAAATAATGTTGAAAAATAGAGTTGGAGTATGTCTGTTTGTAGGGAAGCCATGCTGGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTCTTCCACTAATAGATGCGGGGTACTGTGGGTTTCTCTGA

Coding sequence (CDS)

ATGGAGATGAGCAAGAAGCTGGTCGTTTTAGCAATGGCGGTCGTGCTACTTGTGGGCGATTCAGTTGGAGGCACCAACACGTTCACCATTGGCGAGGCGATGGAAGTCAGTTCCGATGAGGTCAACCGAGTGGATAATTCAGAGATGATGGCTGTCCCAAGAAAAATAATGTTGAAAAATAGAGTTGGAGTATGTCTGTTTGTAGGGAAGCCATGCTGGAGTGATGCAGATTGTCCTTCTGGGTGCTATTGCAAACCTCTTCCACTAATAGATGCGGGGTACTGTGGGTTTCTCTGA

Protein sequence

MEMSKKLVVLAMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLKNRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYCGFL

Homology

[Close]

BLAST of CaUC10G188090 vs. NCBI nr
Match: KGN52756.1 (hypothetical protein Csa_014977 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 9.2e-25
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 3  MSKK-LVVLAMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLKN- 62
          MSKK LVVLAM  VLLV +SV  T+  TI EA EV+SDEVN+    EM+  PRK+ L+N 
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKA-GLEMIFAPRKLKLRNG 60

Query: 63 --RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
            R+GVCL VGKPC SDADCPSGCYCKP+PL++ GYCGFL
Sbjct: 61 GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

[Close]

BLAST of CaUC10G188090 vs. NCBI nr
Match: KAA0044331.1 (hypothetical protein E6C27_scaffold46G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-21
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 12 MAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN---RVGVCLF 71
          MA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN   R+GVCL 
Sbjct: 1  MAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKNGGPRLGVCLL 60

Query: 72 VGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
          VGKPC SDADCPSGCYCKP+PL+D GYCGFL
Sbjct: 61 VGKPCMSDADCPSGCYCKPVPLLDIGYCGFL 90

[Close]

BLAST of CaUC10G188090 vs. NCBI nr
Match: TYK29460.1 (hypothetical protein E5676_scaffold655G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 3  MSKK-LVVLAMAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN 62
          MSKK LVVLAMA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN
Sbjct: 1  MSKKALVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKN 60

Query: 63 ---RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAG 94
             R+GVCL VGKPC SDADCPSGCYCKP+PL+D G
Sbjct: 61 GGPRLGVCLLVGKPCMSDADCPSGCYCKPVPLLDIG 95

[Close]

BLAST of CaUC10G188090 vs. NCBI nr
Match: TYK29461.1 (hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-09
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 3   MSKKLVVLAMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+ +LAMAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGLLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

[Close]

BLAST of CaUC10G188090 vs. NCBI nr
Match: KAA0044332.1 (hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.1e-09
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 3   MSKKLVVLAMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+  LAMAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGFLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

[Close]

BLAST of CaUC10G188090 vs. ExPASy TrEMBL
Match: A0A0A0KY29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-25
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 3  MSKK-LVVLAMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLKN- 62
          MSKK LVVLAM  VLLV +SV  T+  TI EA EV+SDEVN+    EM+  PRK+ L+N 
Sbjct: 1  MSKKTLVVLAMVFVLLVANSVRATDIITIDEATEVNSDEVNKA-GLEMIFAPRKLKLRNG 60

Query: 63 --RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
            R+GVCL VGKPC SDADCPSGCYCKP+PL++ GYCGFL
Sbjct: 61 GSRLGVCLLVGKPCLSDADCPSGCYCKPVPLLNIGYCGFL 99

[Close]

BLAST of CaUC10G188090 vs. ExPASy TrEMBL
Match: A0A5A7TRX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00540 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.0e-22
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 12 MAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN---RVGVCLF 71
          MA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN   R+GVCL 
Sbjct: 1  MAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKNGGPRLGVCLL 60

Query: 72 VGKPCWSDADCPSGCYCKPLPLIDAGYCGFL 99
          VGKPC SDADCPSGCYCKP+PL+D GYCGFL
Sbjct: 61 VGKPCMSDADCPSGCYCKPVPLLDIGYCGFL 90

[Close]

BLAST of CaUC10G188090 vs. ExPASy TrEMBL
Match: A0A5D3E1P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00540 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.1e-21
Identity = 63/96 (65.62%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 3  MSKK-LVVLAMAVVLLVGDSVGGTNTFTIGEAM-EVSSDEVNRVDNSEMMAVPRKIMLKN 62
          MSKK LVVLAMA VLLV +SV  T+  TI E + EV+SDEVNR    ++ A PRK+ LKN
Sbjct: 1  MSKKALVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKIFA-PRKLKLKN 60

Query: 63 ---RVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAG 94
             R+GVCL VGKPC SDADCPSGCYCKP+PL+D G
Sbjct: 61 GGPRLGVCLLVGKPCMSDADCPSGCYCKPVPLLDIG 95

[Close]

BLAST of CaUC10G188090 vs. ExPASy TrEMBL
Match: A0A5D3E1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00550 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 3   MSKKLVVLAMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+ +LAMAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGLLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

[Close]

BLAST of CaUC10G188090 vs. ExPASy TrEMBL
Match: A0A5A7TM06 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00550 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-09
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 3   MSKKLVVLAMAVVLLVGDSVGGTNTFTIGEAMEVSSDEVNRVDNSEMMAVPRKIMLK--- 62
           MSKK+  LAMAV++L+  S G T++  + E +E+ SDE N V  + M    RK+M +   
Sbjct: 5   MSKKVGFLAMAVLMLMAISAGATSS-EVDEVIELPSDEANMVVATNMEMWSRKMMKEGDR 64

Query: 63  --NRVGVCLFVGKPCWSDADCPSGCYCKPLPLIDAGYC 96
             +  G+CL VG PC SD +C SGC CK  P++  G C
Sbjct: 65  KGSGNGLCLIVGTPCNSDENCFSGCRCKTTPILKLGIC 101

The following BLAST results are available for this feature:

BLAST of CaUC10G188090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52756.1	9.2e-25	66.00	hypothetical protein Csa_014977 [Cucumis sativus]	[more]
KAA0044331.1	1.2e-21	64.84	hypothetical protein E6C27_scaffold46G00540 [Cucumis melo var. makuwa]	[more]
TYK29460.1	1.1e-20	65.63	hypothetical protein E5676_scaffold655G00540 [Cucumis melo var. makuwa]	[more]
TYK29461.1	4.2e-09	42.86	hypothetical protein E5676_scaffold655G00550 [Cucumis melo var. makuwa]	[more]
KAA0044332.1	7.1e-09	42.86	hypothetical protein E6C27_scaffold46G00550 [Cucumis melo var. makuwa]	[more]

BLAST of CaUC10G188090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC10G188090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY29	4.5e-25	66.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1	[more]
A0A5A7TRX6	6.0e-22	64.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E1P7	5.1e-21	65.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E1J3	2.0e-09	42.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TM06	3.4e-09	42.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CaUC10G188090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC10G188090.1	CaUC10G188090.1	mRNA