Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCCTCTCCAGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTGCTATACGCCGTCGTTTTGATGATCTGAGAGCAGTCGGATTTGATTCGTTCTCCGTGTCTGTCTATCTGAGTGATTTATTGTAGCATCTTACTGAGTACATTTTTTCTTGATTTTGTATCTGTTTTTTTTTTCTCCTCTTTTTTTTTCACAGTTATTATCATTATTCTTCATTATCTGA
mRNA sequence
ATGGCTATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCCTCTCCAGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTGCTATACGCCTTATTATCATTATTCTTCATTATCTGA
Coding sequence (CDS)
ATGGCTATTAGAAGTCTTGCGGCGATGCTTTTAGTTGCATTGTTGATTGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGCAAATCACCATCGAAGGCTCCATCAGCGTCTCCGTCTGTTAAGTCGCCGAAATCCTCTCCGGCAGCCGCACCTACTCCGTCCTCTCTGAAGTCTCCACCATCTCCTCCGTCTACATCGCCGTCTACTTCTCCCTCTCCAGCGACCTCTCCTTCCTCGATCTCCTCACCGCCCGCTGATGCTCCTGCTCCGTCAGGTAACGGCGCCGCTTCGATCCCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTGCTATACGCCTTATTATCATTATTCTTCATTATCTGA
Protein sequence
MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALLSLFFII
Homology
BLAST of CaUC10G187450 vs. NCBI nr
Match:
XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])
HSP 1 Score: 153.3 bits (386), Expect = 1.4e-33
Identity = 109/126 (86.51%), Postives = 113/126 (89.68%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIRS AM+LVALLIGSAIAQSP ASP SPSKSPSKAPSASPSVKSPKSSPAAAPTPS
Sbjct: 1 MAIRSFVAMILVALLIGSAIAQSPGASP--SPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
Query: 61 SLKSPPSPPSTSPSTSP----SPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVL 120
SLKSPPSPPSTSP+TSP SPATSPS ISSPPADAPAPSGNGAASI FSVFGSVAVVL
Sbjct: 61 SLKSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVL 120
Query: 121 YALLSL 123
Y ++ L
Sbjct: 121 YTVVLL 124
BLAST of CaUC10G187450 vs. NCBI nr
Match:
XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 94/120 (78.33%), Postives = 107/120 (89.17%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M++VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
SL+SPPSPP+ SPS SPSP+ SPSSISSPPADAPAPSGN AASI S+FGSVA VLYA++
Sbjct: 61 SLQSPPSPPAASPSLSPSPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVLYAIV 120
BLAST of CaUC10G187450 vs. NCBI nr
Match:
XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])
HSP 1 Score: 138.3 bits (347), Expect = 4.7e-29
Identity = 96/120 (80.00%), Postives = 106/120 (88.33%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M+ VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI FS+FGSVA VLYA++
Sbjct: 61 SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIV 118
BLAST of CaUC10G187450 vs. NCBI nr
Match:
KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 137.5 bits (345), Expect = 7.9e-29
Identity = 97/126 (76.98%), Postives = 109/126 (86.51%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M++VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI FS+FGSVA VLYA+
Sbjct: 61 SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIF 120
Query: 121 SLFFII 127
+ I+
Sbjct: 121 GMDSIL 124
BLAST of CaUC10G187450 vs. NCBI nr
Match:
KGN53727.1 (hypothetical protein Csa_015026 [Cucumis sativus])
HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 95/120 (79.17%), Postives = 105/120 (87.50%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAI SL A++ V+ I SA AQSPAASPSLSP+KSPSKAPS + SPKSSPA APTPS
Sbjct: 1 MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
SLKSPPSPPS+SPSTSPSPA+SP+SISSPPADAPAPSGNGAASI FSVFGSVAV LYA++
Sbjct: 61 SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 116
BLAST of CaUC10G187450 vs. ExPASy Swiss-Prot
Match:
Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)
HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 0
Query: 4 RSLAAMLLVALLIGSAIAQSPAASPS------LSPSKSPSK--APSASPSVKSPKSSPAA 63
+SL +LL ALLI SA+AQSPA +PS +SP+ SP K AP+ +P V SP SPAA
Sbjct: 5 KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64
Query: 64 APTPSSLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVV 119
A TP S SPPSPP T+ SPA SPS+IS P +AP P+ GA S F+ FGSVAV+
Sbjct: 65 ALTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVM 124
BLAST of CaUC10G187450 vs. ExPASy TrEMBL
Match:
A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 2.3e-29
Identity = 96/120 (80.00%), Postives = 106/120 (88.33%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIR M+ VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI FS+FGSVA VLYA++
Sbjct: 61 SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIV 118
BLAST of CaUC10G187450 vs. ExPASy TrEMBL
Match:
A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1)
HSP 1 Score: 137.1 bits (344), Expect = 5.0e-29
Identity = 95/120 (79.17%), Postives = 105/120 (87.50%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAI SL A++ V+ I SA AQSPAASPSLSP+KSPSKAPS + SPKSSPA APTPS
Sbjct: 1 MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
SLKSPPSPPS+SPSTSPSPA+SP+SISSPPADAPAPSGNGAASI FSVFGSVAV LYA++
Sbjct: 61 SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 116
BLAST of CaUC10G187450 vs. ExPASy TrEMBL
Match:
A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 98/120 (81.67%), Postives = 103/120 (85.83%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIRS M+LVALLIGSAIAQSPAASPSLSP KSPSKAPSASPSVKSPKSSP AAPTP+
Sbjct: 1 MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
S SPSTSPSPA SPSSISSPPADAPAPSG+GAASI FSVFGSVAVVLYA++
Sbjct: 61 S----------SPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVV 109
BLAST of CaUC10G187450 vs. ExPASy TrEMBL
Match:
A0A6J1J6X2 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483108 PE=4 SV=1)
HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 98/120 (81.67%), Postives = 102/120 (85.00%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MAIRS M+LVALLIGSAIAQSPAASPSLSP KSPSKAP ASPSVKSPKSSP AAPTP+
Sbjct: 1 MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPLASPSVKSPKSSP-AAPTPA 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
S SPSTSPSPA SPSSISSPPADAPAPSGNGAASI FSVFGSVAVVLYA++
Sbjct: 61 S----------SPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVV 109
BLAST of CaUC10G187450 vs. ExPASy TrEMBL
Match:
A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 93/120 (77.50%), Postives = 104/120 (86.67%), Query Frame = 0
Query: 1 MAIRSLAAMLLVALLIGSAIAQSPAASPSLSPSKSPSKAPSASPSVKSPKSSPAAAPTPS 60
MA R M+ VA+LI SAIAQSP+ASPSLSP+KSPSKAPS SPSV+SPKSSPAAAPTP+
Sbjct: 1 MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60
Query: 61 SLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVVLYALL 120
SLKSPPSPP+ SPS SPSP SPSSISSPPADAPAPSGN AASI S+FGSVA VL+A++
Sbjct: 61 SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNSAASISLSMFGSVAAVLFAIV 118
BLAST of CaUC10G187450 vs. TAIR 10
Match:
AT5G64310.1 (arabinogalactan protein 1 )
HSP 1 Score: 68.9 bits (167), Expect = 3.2e-12
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 0
Query: 4 RSLAAMLLVALLIGSAIAQSPAASPS------LSPSKSPSK--APSASPSVKSPKSSPAA 63
+SL +LL ALLI SA+AQSPA +PS +SP+ SP K AP+ +P V SP SPAA
Sbjct: 5 KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64
Query: 64 APTPSSLKSPPSPPSTSPSTSPSPATSPSSISSPPADAPAPSGNGAASIPFSVFGSVAVV 119
A TP S SPPSPP T+ SPA SPS+IS P +AP P+ GA S F+ FGSVAV+
Sbjct: 65 ALTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVM 124
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038877310.1 | 1.4e-33 | 86.51 | classical arabinogalactan protein 1 [Benincasa hispida] | [more] |
XP_023542663.1 | 1.2e-29 | 78.33 | classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022942993.1 | 4.7e-29 | 80.00 | classical arabinogalactan protein 1-like [Cucurbita moschata] | [more] |
KAG7030900.1 | 7.9e-29 | 76.98 | hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KGN53727.1 | 1.0e-28 | 79.17 | hypothetical protein Csa_015026 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Q8LCN5 | 4.5e-11 | 54.47 | Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1FW49 | 2.3e-29 | 80.00 | classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A0A0KZB8 | 5.0e-29 | 79.17 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1 | [more] |
A0A6J1E9Q3 | 1.9e-28 | 81.67 | classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A6J1J6X2 | 2.5e-28 | 81.67 | classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
A0A6J1JSK4 | 2.1e-27 | 77.50 | classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... | [more] |
Match Name | E-value | Identity | Description | |
AT5G64310.1 | 3.2e-12 | 54.47 | arabinogalactan protein 1 | [more] |