Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGTGAAGTAGTACCGTGAGGGAAGGGTGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTTCCAAGCAGTGGGAGGAGACCAGGACTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATGGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA
mRNA sequence
ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA
Coding sequence (CDS)
ATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA
Protein sequence
MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVGSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP
Homology
BLAST of CaUC10G181560 vs. NCBI nr
Match:
CAD5336145.1 (unnamed protein product [Arabidopsis thaliana])
HSP 1 Score: 241.9 bits (616), Expect = 3.5e-60
Identity = 125/166 (75.30%), Postives = 128/166 (77.11%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI
Sbjct: 221 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 280
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVGS--------------------- 120
PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGV S
Sbjct: 281 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGAA 340
Query: 121 -----------RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV 135
RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Sbjct: 341 VDWTSRGKALFRSASETVGDKLHRREGNSPDHQLRPLNDRSVIKEM 386
BLAST of CaUC10G181560 vs. NCBI nr
Match:
CAD5336141.1 (unnamed protein product [Arabidopsis thaliana])
HSP 1 Score: 241.9 bits (616), Expect = 3.5e-60
Identity = 125/166 (75.30%), Postives = 128/166 (77.11%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI
Sbjct: 135 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 194
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVGS--------------------- 120
PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGV S
Sbjct: 195 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGAA 254
Query: 121 -----------RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV 135
RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Sbjct: 255 VDWTSRGKALFRSASETVGDKLHRREGNSPDHQLRPLNDRSVIKEM 300
BLAST of CaUC10G181560 vs. NCBI nr
Match:
CAD5336140.1 (unnamed protein product [Arabidopsis thaliana] >CAD5336144.1 unnamed protein product [Arabidopsis thaliana])
HSP 1 Score: 241.9 bits (616), Expect = 3.5e-60
Identity = 125/166 (75.30%), Postives = 128/166 (77.11%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI
Sbjct: 135 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 194
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVGS--------------------- 120
PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGV S
Sbjct: 195 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGAA 254
Query: 121 -----------RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV 135
RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Sbjct: 255 VDWTSRGKALFRSASETVGDKLHRREGNSPDHQLRPLNDRSVIKEM 300
BLAST of CaUC10G181560 vs. NCBI nr
Match:
KAF3622453.1 (hypothetical protein FXO37_32330 [Capsicum annuum])
HSP 1 Score: 199.9 bits (507), Expect = 1.5e-47
Identity = 108/151 (71.52%), Postives = 115/151 (76.16%), Query Frame = 0
Query: 3 ESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILP 62
ESVGG GGGLPCGGCQRFESAYLQLVNLADTKLYD T FFRF SIYDLSF+DVDKI P
Sbjct: 127 ESVGG--GGGLPCGGCQRFESAYLQLVNLADTKLYDCTQFFRFSGSIYDLSFIDVDKIHP 186
Query: 63 FSSTLGWHSLKVKG-----------EVQTKKGLRWIPRHPETRKGVGSRSASETMGDKLH 122
FSSTLGWHSLK +G E TK R+ K GS+SASET+GDKLH
Sbjct: 187 FSSTLGWHSLKSEGQGVKHYFSAGRESGTKLRQTLNTRYGLKIKKEGSKSASETIGDKLH 246
Query: 123 RREGNSPDHQLRPLNDRSVIKEVGVQRQPGG 143
RRE NSPDHQLRPLN RS+IKEVGV+RQPGG
Sbjct: 247 RRERNSPDHQLRPLNGRSMIKEVGVRRQPGG 275
BLAST of CaUC10G181560 vs. NCBI nr
Match:
KAF3622463.1 (hypothetical protein FXO38_31271 [Capsicum annuum])
HSP 1 Score: 195.7 bits (496), Expect = 2.9e-46
Identity = 107/151 (70.86%), Postives = 114/151 (75.50%), Query Frame = 0
Query: 3 ESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILP 62
ESVGG GGGLP GGCQRFESAYLQLVNLADTKLYD T FFRF SIYDLSF+DVDKI P
Sbjct: 127 ESVGG--GGGLPYGGCQRFESAYLQLVNLADTKLYDCTQFFRFSGSIYDLSFIDVDKIHP 186
Query: 63 FSSTLGWHSLKVKG-----------EVQTKKGLRWIPRHPETRKGVGSRSASETMGDKLH 122
FSSTLGWHSLK +G E TK R+ K GS+SASET+GDKLH
Sbjct: 187 FSSTLGWHSLKSEGQGVKHYFSAGRESGTKLRQTLNTRYGLKIKKEGSKSASETIGDKLH 246
Query: 123 RREGNSPDHQLRPLNDRSVIKEVGVQRQPGG 143
RRE NSPDHQLRPLN RS+IKEVGV+RQPGG
Sbjct: 247 RRERNSPDHQLRPLNGRSMIKEVGVRRQPGG 275
BLAST of CaUC10G181560 vs. ExPASy TrEMBL
Match:
A0A2N9GIA5 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 3.4e-61
Identity = 130/190 (68.42%), Postives = 132/190 (69.47%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDLSFMDVDKI
Sbjct: 826 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDLSFMDVDKI 885
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKG------------------------ 120
LPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKG
Sbjct: 886 LPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGRMAWLREPTGAVAKASLHRAIVTA 945
Query: 121 --------------------------------VGSRSASETMGDKLHRREGNSPDHQLRP 135
GSRSASETMGDKLHRREGNSPDHQLRP
Sbjct: 946 YGPEPGGEMPLEPRASWFSPKCVEAQQLTGHLGGSRSASETMGDKLHRREGNSPDHQLRP 1005
BLAST of CaUC10G181560 vs. ExPASy TrEMBL
Match:
A0A7G2FKR6 (Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS23352 PE=3 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 125/166 (75.30%), Postives = 128/166 (77.11%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI
Sbjct: 135 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 194
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVGS--------------------- 120
PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGV S
Sbjct: 195 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGAA 254
Query: 121 -----------RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV 135
RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Sbjct: 255 VDWTSRGKALFRSASETVGDKLHRREGNSPDHQLRPLNDRSVIKEM 300
BLAST of CaUC10G181560 vs. ExPASy TrEMBL
Match:
A0A7G2FMH4 (Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS23357 PE=3 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 125/166 (75.30%), Postives = 128/166 (77.11%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI
Sbjct: 221 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 280
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVGS--------------------- 120
PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGV S
Sbjct: 281 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGAA 340
Query: 121 -----------RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV 135
RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Sbjct: 341 VDWTSRGKALFRSASETVGDKLHRREGNSPDHQLRPLNDRSVIKEM 386
BLAST of CaUC10G181560 vs. ExPASy TrEMBL
Match:
A0A7G2FJL3 (Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS23353 PE=3 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 1.7e-60
Identity = 125/166 (75.30%), Postives = 128/166 (77.11%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESV GL GGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYD SFMDVDKI
Sbjct: 135 MVESVRGLIGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDFSFMDVDKI 194
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVGS--------------------- 120
PFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGV S
Sbjct: 195 FPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGAA 254
Query: 121 -----------RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEV 135
RSASET+GDKLHRREGNSPDHQLRPLNDRSVIKE+
Sbjct: 255 VDWTSRGKALFRSASETVGDKLHRREGNSPDHQLRPLNDRSVIKEM 300
BLAST of CaUC10G181560 vs. ExPASy TrEMBL
Match:
A0A2N9I366 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48378 PE=3 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 6.3e-55
Identity = 131/251 (52.19%), Postives = 133/251 (52.99%), Query Frame = 0
Query: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKI 60
MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDST FFRFGSSIYDLSFMDVDKI
Sbjct: 1 MVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTQFFRFGSSIYDLSFMDVDKI 60
Query: 61 LPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGV----------------------- 120
LPFSSTLGWHSLKVKGEVQT+KGLRWIPRHPETRKGV
Sbjct: 61 LPFSSTLGWHSLKVKGEVQTRKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSLGEAV 120
Query: 121 ------------------------------------------------------------ 135
Sbjct: 121 ECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPLAWLREPTGAVAKASLHRAIVT 180
BLAST of CaUC10G181560 vs. TAIR 10
Match:
AT2G07706.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 35/62 (56.45%), Postives = 37/62 (59.68%), Query Frame = 0
Query: 103 SETMGDKLHRR----------EGNSPDHQLRPLNDRSVIKEVGVQRQPGGL------PRS 149
SET G ++ R EGNSPDHQLRP N RSVIKEVGVQRQP L PRS
Sbjct: 36 SETRGTRVKRTLVTRELLSLGEGNSPDHQLRPPNGRSVIKEVGVQRQPRSLLAAPMPPRS 95
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| CAD5336145.1 | 3.5e-60 | 75.30 | unnamed protein product [Arabidopsis thaliana] | [more] |
| CAD5336141.1 | 3.5e-60 | 75.30 | unnamed protein product [Arabidopsis thaliana] | [more] |
| CAD5336140.1 | 3.5e-60 | 75.30 | unnamed protein product [Arabidopsis thaliana] >CAD5336144.1 unnamed protein pro... | [more] |
| KAF3622453.1 | 1.5e-47 | 71.52 | hypothetical protein FXO37_32330 [Capsicum annuum] | [more] |
| KAF3622463.1 | 2.9e-46 | 70.86 | hypothetical protein FXO38_31271 [Capsicum annuum] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A2N9GIA5 | 3.4e-61 | 68.42 | Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26796 PE=3... | [more] |
| A0A7G2FKR6 | 1.7e-60 | 75.30 | Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS233... | [more] |
| A0A7G2FMH4 | 1.7e-60 | 75.30 | Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS233... | [more] |
| A0A7G2FJL3 | 1.7e-60 | 75.30 | Uncharacterized protein ycf68 OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS233... | [more] |
| A0A2N9I366 | 6.3e-55 | 52.19 | Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48378 PE=3... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G07706.1 | 1.5e-08 | 56.45 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
