CaUC09G177740 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G177740
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Cleavage and polyadenylation specificity factor subunit 6
Location	Ciama_Chr09: 36983566 .. 36986028 (-)
RNA-Seq Expression	CaUC09G177740
Synteny	CaUC09G177740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGTCATTCCAAGAAGATGATGAGGAGAAATTGGCAGATTTCCACGCGCGATTCGAGATTAGGGTTTCTTTCTCTATCCTCTCTGTGTGTTCTTCTTCCCCTTTTCTTCTGCACTTCTTCCCCAATTGGGGCTTCGATCTCTTAGTTTTAACTTCTCTTCCTTACTTTGAAATTCACTTTCTAACTGCTTCCATCCACTTTCTGATGTTGCCTGCATTCAATTTCTGAATTTGAATGAATCTTTAGAGGACGTCGTTGAAGAAGGTAGACATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATCGGAATGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATATGAAGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGCGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGCGGAGGTGCGACTGAAGTTGCTGGTTTAGGAGATGGTGGGCGCAGTGTTTCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAGCGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGGCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAAACAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTCCGCATCAGGTACAGCCCCATCCCCAGCCCCAGCCCCAGCCCCAGACCCAGATCCAGACCCATCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCGCAGCACCTCCAGCAACCATCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGGGGAAGTGGCGGTGGAACGATCTTGTTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGCTGAACTCTGTAAGTATGGTCCTTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCTACGGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGGCCATGTGTTGTTGCATATGCATCCCCGTTTAGTGTTAAAAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGACTTGGTGCTACCCCTCCTTTGTTGCATCCACAATCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCTCCTCCTTTCTCTGGAATTTTATCGTCCTTTCCCCCTGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCAGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGAAGAGCTGATGAATCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGCGAAGGTAGTCATGAAAGGGGCGCGTGGGCCAATTCTGCAAAGGAGAAAGATAGAGGCTCCGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTTGGATATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGAGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGATAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGATAGATTTTCTGATCATCATAGGTATAGAGATCGGGAACCAGAGCATGAGGAGGATTGGGATAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCACAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

mRNA sequence

ATGACAAAGTCATTCCAAGAAGATGATGAGGAGAAATTGGCAGATTTCCACGCGCGATTCGAGATTAGGAGGACGTCGTTGAAGAAGGTAGACATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATCGGAATGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATATGAAGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGCGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGCGGAGGTGCGACTGAAGTTGCTGGTTTAGGAGATGGTGGGCGCAGTGTTTCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAGCGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGGCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAAACAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTCCGCATCAGGTACAGCCCCATCCCCAGCCCCAGCCCCAGCCCCAGACCCAGATCCAGACCCATCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCGCAGCACCTCCAGCAACCATCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGGGGAAGTGGCGGTGGAACGATCTTGTTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGCTGAACTCTGTAAGTATGGTCCTTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCTACGGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGGCCATGTGTTGTTGCATATGCATCCCCGTTTAGTGTTAAAAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGACTTGGTGCTACCCCTCCTTTGTTGCATCCACAATCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCTCCTCCTTTCTCTGGAATTTTATCGTCCTTTCCCCCTGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCAGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGAAGAGCTGATGAATCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGCGAAGGTAGTCATGAAAGGGGCGCGTGGGCCAATTCTGCAAAGGAGAAAGATAGAGGCTCCGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTTGGATATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGAGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGATAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGATAGATTTTCTGATCATCATAGGTATAGAGATCGGGAACCAGAGCATGAGGAGGATTGGGATAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCACAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

Coding sequence (CDS)

ATGACAAAGTCATTCCAAGAAGATGATGAGGAGAAATTGGCAGATTTCCACGCGCGATTCGAGATTAGGAGGACGTCGTTGAAGAAGGTAGACATGGATGAAGGTGAGGGTGGGTTCGGTGAGGGTGTGGATCAGATTGATCAGTTTCATCGGAATGAGGCCATTTCAGCCGTTGCTGATGATGGTTTCTTGGGCGAAGATGAGGATGAATATGAAGACCTGTATAACGATGTTAATGTTGGGGAGGGGTTCCTTCAGTCGTTGAGGAAGAACGATGATTTGGGATTCAAGAGCGAGGAGGAGCCCAAGATGGAGCCTCCTGCACCTGTACCACCCAGTTCCGGTGCTTCCATACCTGGTATTGGCGGAGGTGCGACTGAAGTTGCTGGTTTAGGAGATGGTGGGCGCAGTGTTTCGGAGAGAGTAACCGAGGGTTACAATCAGATTCCAGATTTAAGAGCGAATGAGATGGCTATCAGAGGTGGGGTGGGATCGGGGCCGCCTGTAGCCGGCGGAGGTGGGATTAGGGTTGAATTAGGGCAAGGGAGTAAAAACAATGAGTTGGAGGAGCGAAGTAGTAATAACGTAGCTCCGCATCAGGTACAGCCCCATCCCCAGCCCCAGCCCCAGCCCCAGACCCAGATCCAGACCCATCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCGCAGCACCTCCAGCAACCATCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTTTGCTAAGGCAAGGTGGTGGAGTAAATGTAAATGGGGTTGGTGGAAATGGGTTCGGTAATATGGGGAGTGCAGGGGGAAGTGGCGGTGGAACGATCTTGTTTGTTGGTGATTTACATTGGTGGACTACAGATGCGGAGCTGGAGGCTGAACTCTGTAAGTATGGTCCTTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAGTTTTATGATCCTTCTGCTGCTACGGCTTGCAAGGAGGGAATGAATGGGCATATTTTTAATGGACGGCCATGTGTTGTTGCATATGCATCCCCGTTTAGTGTTAAAAGGATGGGAGAAGCCCAAGTGAATAGGAACCAACAGATGTCCCAAGCTACTAATCCTCAAGCAAGGAGAGGTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGCATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGAGGTAATGCACATGGAATGGGAGGTCGAGGACCGGCTGGCCCAATGAGGAGTAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGACTTGGTGCTACCCCTCCTTTGTTGCATCCACAATCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGCACATATGGTGGTTTTCCTGGAGCTCCGGCTCCTCCTTTCTCTGGAATTTTATCGTCCTTTCCCCCTGTTGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCAGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCATGGTGGAGGAAGAGCTGATGAATCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCAATATGGCGAAGGTAGTCATGAAAGGGGCGCGTGGGCCAATTCTGCAAAGGAGAAAGATAGAGGCTCCGAAAGGGACTGGTCACAGTCTTCTGATAGAAGGTATCGAGATGATAGAGATGTTGGATATGATAGAGAGAGATCCAAAGAAAAAGATCCGGGGCCTGACCATGATTGGCCAGATAGAAGGCCACGTGATGATAGAGATATAGGGCGTGAAAGGGATAAAGATAGGGATCGAGATAGGGATAGAGAACGATCTCGAGATTATGAGCGTGGCCATCATGATCGTGATCGTGAACGTGATAGGGATCGTGACCGTGATAGGTACAAGGAAGATAGGGATAGATTTTCTGATCATCATAGGTATAGAGATCGGGAACCAGAGCATGAGGAGGATTGGGATAGGGGACGGTCATCAAGGACTCATAGCAAGTCCCGATTATCACAAGAAGAAGAAAATCGCTCTAGATCAAGGGATGCTGATTATGGGAAGAGGCGGAGGCTTACTTCTGAATAG

Protein sequence

MTKSFQEDDEEKLADFHARFEIRRTSLKKVDMDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGDGGRSVSERVTEGYNQIPDLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQPQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDADYGKRRRLTSE

Homology

[Close]

BLAST of CaUC09G177740 vs. NCBI nr
Match: XP_038897335.1 (cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida] >XP_038897338.1 cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispida])

HSP 1 Score: 1291.6 bits (3341), Expect = 0.0e+00
Identity = 683/728 (93.82%), Postives = 694/728 (95.33%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDE EGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDESEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGDGGRSVSERVTEGYNQIPD 151
           DDLGFK+ EEPKMEPPAP PPSSGASIPG+GGGATEVAGLGDGG SVSERVTEGYNQIPD
Sbjct: 61  DDLGFKT-EEPKMEPPAPAPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQP 211
           +RANEMAIRGG G GPPV GGGGIRVELGQGSK NELEERS+NN+A HQ          P
Sbjct: 121 IRANEMAIRGGAGPGPPVGGGGGIRVELGQGSKTNELEERSNNNIAAHQA---------P 180

Query: 212 QTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN 271
           Q Q     QPQ Q QPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN
Sbjct: 181 QQQ-----QPQLQAQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN 240

Query: 272 MGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFY 331
           MGSAGG GGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFY
Sbjct: 241 MGSAGGGGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFY 300

Query: 332 DPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPND 391
           DPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPND
Sbjct: 301 DPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPND 360

Query: 392 AVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIM 451
           AVGKIGGS+IATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIM
Sbjct: 361 AVGKIGGSNIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIM 420

Query: 452 GNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF 511
           GNGGNGFGQG+GA PPLLHPQSMM QGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF
Sbjct: 421 GNGGNGFGQGIGAAPPLLHPQSMMAQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF 480

Query: 512 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG 571
           PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG
Sbjct: 481 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG 540

Query: 572 GRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYD 631
           GRADESSYGEEAGSDQQYGEGSH+RGAWANS KEKDRGSERDWSQSSDRRYRDDRDVGYD
Sbjct: 541 GRADESSYGEEAGSDQQYGEGSHDRGAWANSTKEKDRGSERDWSQSSDRRYRDDRDVGYD 600

Query: 632 RERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRD 691
           RERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRD
Sbjct: 601 RERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRD 660

Query: 692 RDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDADYG 751
           RDRDRYKEDRDR+SDHHRYRDREPEHEEDW+RGRSSRTHSKSRLSQEEENRSR+RDADYG
Sbjct: 661 RDRDRYKEDRDRYSDHHRYRDREPEHEEDWERGRSSRTHSKSRLSQEEENRSRTRDADYG 713

Query: 752 KRRRLTSE 760
           KRRRLTSE
Sbjct: 721 KRRRLTSE 713

[Close]

BLAST of CaUC09G177740 vs. NCBI nr
Match: XP_038897113.1 (uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida])

HSP 1 Score: 1268.4 bits (3281), Expect = 0.0e+00
Identity = 673/728 (92.45%), Postives = 686/728 (94.23%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGDGGRSVSERVTEGYNQIPD 151
           DDLGFK+ EEPKMEPPAPVPPSSGASIPG+GGGATEVAGLGDGG SVSERVTEGYNQIPD
Sbjct: 61  DDLGFKT-EEPKMEPPAPVPPSSGASIPGVGGGATEVAGLGDGGHSVSERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQP 211
           LR NEMA+RGGVGSGPPV GGGGIRVELGQGSK +ELEERSSNNV  HQ           
Sbjct: 121 LRTNEMAVRGGVGSGPPVGGGGGIRVELGQGSKTSELEERSSNNVVAHQA---------- 180

Query: 212 QTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN 271
               Q   Q QPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGG +NVNGVGGN FGN
Sbjct: 181 ----QHQHQQQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGVINVNGVGGNAFGN 240

Query: 272 MGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFY 331
           MGSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEFY
Sbjct: 241 MGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFY 300

Query: 332 DPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPND 391
           DPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQVNRNQQM+QATNPQARRGPND
Sbjct: 301 DPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQMAQATNPQARRGPND 360

Query: 392 AVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIM 451
           AVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIM
Sbjct: 361 AVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGIM 420

Query: 452 GNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF 511
           GNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF
Sbjct: 421 GNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSF 480

Query: 512 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG 571
           PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG
Sbjct: 481 PPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGG 540

Query: 572 GRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGYD 631
           GRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD      D
Sbjct: 541 GRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD------D 600

Query: 632 RERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDRD 691
           RERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDR+R+RDRD
Sbjct: 601 RERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRERDRDRD 660

Query: 692 RDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDADYG 751
           RDRDRYKEDRDR+ DHHRYRDREPEHEEDW+RGRSSRTHSKSRLSQ+EENRSRSRD DYG
Sbjct: 661 RDRDRYKEDRDRYFDHHRYRDREPEHEEDWERGRSSRTHSKSRLSQDEENRSRSRDVDYG 707

Query: 752 KRRRLTSE 760
           KRRRLTSE
Sbjct: 721 KRRRLTSE 707

[Close]

BLAST of CaUC09G177740 vs. NCBI nr
Match: XP_031744545.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >XP_031744546.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >KAE8645915.1 hypothetical protein Csa_011894 [Cucumis sativus])

HSP 1 Score: 1266.1 bits (3275), Expect = 0.0e+00
Identity = 672/729 (92.18%), Postives = 691/729 (94.79%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGD-GGRSVSERVTEGYNQIP 151
           DDLGFK EEEPKMEPPAPVPPSS ASIPGIGGGATEV GLGD GGR+VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQ 211
           DLR NEMAIRGGVGSGPPV  G GIRVELGQGSK  ELEERSSNNVA HQ     Q QPQ
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPQQQQQQPQ 180

Query: 212 PQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 271
                   PQPQPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG
Sbjct: 181 --------PQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 240

Query: 272 NMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEF 331
           N+GSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEF
Sbjct: 241 NIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEF 300

Query: 332 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPN 391
           YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATNPQARR PN
Sbjct: 301 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPN 360

Query: 392 DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGI 451
           +AVGKIGG+SIATGGNYQGGDNNRGSGRGNWGR NAHGMGGRGPAG MR RGGGMGGRGI
Sbjct: 361 EAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGRGI 420

Query: 452 MGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 511
           MGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS
Sbjct: 421 MGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 480

Query: 512 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHG 571
           FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE G
Sbjct: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQG 540

Query: 572 GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 631
           GGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDVGY
Sbjct: 541 GGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 600

Query: 632 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDR 691
           DRERSKEKDPGPDHDWPDRRPR+DRDIGRERDKDRDR+RDRERSRDYERGHH+RDRER+R
Sbjct: 601 DRERSKEKDPGPDHDWPDRRPREDRDIGRERDKDRDRERDRERSRDYERGHHERDRERER 660

Query: 692 DRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDADY 751
           DRDRDRYK+DRD++SDHHRYRDREPEH+EDW+RGRSSRTHSKSRLSQEEENRSRSRDADY
Sbjct: 661 DRDRDRYKDDRDKYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLSQEEENRSRSRDADY 720

Query: 752 GKRRRLTSE 760
           GKRRRLTSE
Sbjct: 721 GKRRRLTSE 721

[Close]

BLAST of CaUC09G177740 vs. NCBI nr
Match: XP_031744552.1 (cleavage and polyadenylation specificity factor subunit CG7185 [Cucumis sativus] >XP_031744554.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >KAE8645917.1 hypothetical protein Csa_011892 [Cucumis sativus])

HSP 1 Score: 1260.7 bits (3261), Expect = 0.0e+00
Identity = 675/739 (91.34%), Postives = 694/739 (93.91%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGD-GGRSVSERVTEGYNQIP 151
           DDLGFK EEEPKMEPPAPVPPSSGASIPGIGGGATEV GLGD GGR+VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSGASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQV--------Q 211
           DLR NEMAIRGGVGSGPPV  G GIRVELGQGSK  ELEERSSNNVA HQ         Q
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAPQQQQQQQQ 180

Query: 212 PHPQPQPQPQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVN 271
              Q Q Q Q Q Q  PQPQPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVN
Sbjct: 181 QQQQQQQQQQQQQQPQPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVN 240

Query: 272 GVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKS 331
           GVGGNGF N+GSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKS
Sbjct: 241 GVGGNGFANIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKS 300

Query: 332 KGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATN 391
           KGYCQVEFYD SAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATN
Sbjct: 301 KGYCQVEFYDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATN 360

Query: 392 PQARRGPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRG 451
           PQARR PN+AVGKIGG+SIATGGNYQGGDNNRGSGRGNWGR NAHGMGGRGPAGPMR RG
Sbjct: 361 PQARRAPNEAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGPMRGRG 420

Query: 452 GGMGGRGIMGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 511
           GGMGGRGIMGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP
Sbjct: 421 GGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAP 480

Query: 512 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMG 571
           PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMG
Sbjct: 481 PFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMG 540

Query: 572 GWGSEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRY 631
           GWGSEE GGGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRY
Sbjct: 541 GWGSEEQGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRY 600

Query: 632 RDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH 691
           RDDRDVGYDRERSKEKDPGPDHDWPDRRPR+DRDIGRERDK+RDRDRDRERSRDYERGHH
Sbjct: 601 RDDRDVGYDRERSKEKDPGPDHDWPDRRPREDRDIGRERDKERDRDRDRERSRDYERGHH 660

Query: 692 DRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRT--HSKSRLSQEEE 751
           +RDRER+RDRDRDRYK+DRDR+SDHHRYRDREPEH+EDW+RGRSSRT  HSKSRLSQEEE
Sbjct: 661 ERDRERERDRDRDRYKDDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEE 720

Query: 752 NRSRSRDADYGKRRRLTSE 760
           +RSRSRDADYGKRRRLTSE
Sbjct: 721 SRSRSRDADYGKRRRLTSE 739

[Close]

BLAST of CaUC09G177740 vs. NCBI nr
Match: TYK07956.1 (cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 1255.4 bits (3247), Expect = 0.0e+00
Identity = 669/731 (91.52%), Postives = 687/731 (93.98%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGD-GGRSVSERVTEGYNQIP 151
           D LGFK EEEPKMEPPAPVPP+SGASIPGIGGGATEV GLGD GG +VSERVTEGYNQIP
Sbjct: 61  DGLGFKREEEPKMEPPAPVPPTSGASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQ 211
           DLR NEMAIRGG GSGPPV GG GIRVELGQGSK  ELEERSSNNVA HQ          
Sbjct: 121 DLRTNEMAIRGGAGSGPPVGGGVGIRVELGQGSKPIELEERSSNNVAGHQA--------- 180

Query: 212 PQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 271
           PQ       QPQ QPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG
Sbjct: 181 PQ-------QPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 240

Query: 272 NMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEF 331
           N+GSAGG  GGT+LFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEF
Sbjct: 241 NVGSAGGGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEF 300

Query: 332 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPN 391
           YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQVNRNQQ++QATNPQARR PN
Sbjct: 301 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPN 360

Query: 392 DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGI 451
           DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR RGGG+GGRGI
Sbjct: 361 DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGRGI 420

Query: 452 MGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 511
           MGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGILSS
Sbjct: 421 MGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGILSS 480

Query: 512 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHG 571
           FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE G
Sbjct: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQG 540

Query: 572 GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 631
           GGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDVGY
Sbjct: 541 GGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 600

Query: 632 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDR 691
           DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH+RDRER+R
Sbjct: 601 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHERDRERER 660

Query: 692 DRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRT--HSKSRLSQEEENRSRSRDA 751
           DRDRDRYK+DR+R+SDHHRYRDREPEH+EDW+RGRSSRT  HSKSRLSQEEE+RSRSRDA
Sbjct: 661 DRDRDRYKDDRERYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEESRSRSRDA 715

Query: 752 DYGKRRRLTSE 760
           DYGKRRRLTSE
Sbjct: 721 DYGKRRRLTSE 715

[Close]

BLAST of CaUC09G177740 vs. ExPASy Swiss-Prot
Match: Q9ZR40 (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-04
Identity = 63/140 (45.00%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 615 SQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRD-DRDIGRERDKDRDRDRDRER 674
           SQ S R    DRD    R R K+++ G D D    R RD DRD GR+RD+ RDRD+DRER
Sbjct: 42  SQHSSRENEKDRD--SSRSREKDRERGRDKD----RDRDRDRDRGRDRDRGRDRDKDRER 101

Query: 675 SRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKS 734
            +D +R H DR R+R   R+++R + DRD   D HR RD + + E   DR    R  S+S
Sbjct: 102 EKDRDRHHGDRHRDRSDRREKERTR-DRDD-DDRHRTRDYDQQREHAKDRESRHRHRSRS 161

Query: 735 RLSQEEENRSRSRDADYGKR 754
           R   E  +RSRSR     KR
Sbjct: 162 RGRSEHRSRSRSRSRSKSKR 173

[Close]

BLAST of CaUC09G177740 vs. ExPASy TrEMBL
Match: A0A0A0K3G6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV=1)

HSP 1 Score: 1258.0 bits (3254), Expect = 0.0e+00
Identity = 667/729 (91.50%), Postives = 686/729 (94.10%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRK+
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKS 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGD-GGRSVSERVTEGYNQIP 151
           DDLGFK EEEPKMEPPAPVPPSS ASIPGIGGGATEV GLGD GGR+VSERVTEGYNQIP
Sbjct: 61  DDLGFKREEEPKMEPPAPVPPSSAASIPGIGGGATEVTGLGDAGGRTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQ 211
           DLR NEMAIRGGVGSGPPV  G GIRVELGQGSK  ELEERSSNNVA HQ          
Sbjct: 121 DLRTNEMAIRGGVGSGPPVGTGVGIRVELGQGSKAIELEERSSNNVAGHQAP-------- 180

Query: 212 PQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 271
                   PQPQPQPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG
Sbjct: 181 --------PQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 240

Query: 272 NMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEF 331
           N+GSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEF
Sbjct: 241 NIGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEF 300

Query: 332 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPN 391
           YD SAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQV+RNQQ++QATNPQARR PN
Sbjct: 301 YDSSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPN 360

Query: 392 DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGI 451
           +AVGKIGG+SIATGGNYQGGDNNRGSGRGNWGR NAHGMGGRGPAG MR RGGGMGGRGI
Sbjct: 361 EAVGKIGGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGRGI 420

Query: 452 MGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 511
           MGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS
Sbjct: 421 MGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 480

Query: 512 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHG 571
           FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE G
Sbjct: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQG 540

Query: 572 GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 631
           GGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDVGY
Sbjct: 541 GGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 600

Query: 632 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDR 691
           DRERSKEKDPGPDHDWPDRRPR+DRDIGRERDKDRDR+RDRERSRDYERGHH+RDRER+R
Sbjct: 601 DRERSKEKDPGPDHDWPDRRPREDRDIGRERDKDRDRERDRERSRDYERGHHERDRERER 660

Query: 692 DRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDADY 751
           DRDRDRYK+DRD++SDHHRYRDREPEH+EDW+RGRSSRTHSKSRLSQEEENRSRSRDADY
Sbjct: 661 DRDRDRYKDDRDKYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLSQEEENRSRSRDADY 713

Query: 752 GKRRRLTSE 760
           GKRRRLTSE
Sbjct: 721 GKRRRLTSE 713

[Close]

BLAST of CaUC09G177740 vs. ExPASy TrEMBL
Match: A0A5D3CC60 (Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00770 PE=4 SV=1)

HSP 1 Score: 1255.4 bits (3247), Expect = 0.0e+00
Identity = 669/731 (91.52%), Postives = 687/731 (93.98%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGD-GGRSVSERVTEGYNQIP 151
           D LGFK EEEPKMEPPAPVPP+SGASIPGIGGGATEV GLGD GG +VSERVTEGYNQIP
Sbjct: 61  DGLGFKREEEPKMEPPAPVPPTSGASIPGIGGGATEVTGLGDAGGHTVSERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQ 211
           DLR NEMAIRGG GSGPPV GG GIRVELGQGSK  ELEERSSNNVA HQ          
Sbjct: 121 DLRTNEMAIRGGAGSGPPVGGGVGIRVELGQGSKPIELEERSSNNVAGHQA--------- 180

Query: 212 PQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 271
           PQ       QPQ QPQPQPQH  QP QSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG
Sbjct: 181 PQ-------QPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 240

Query: 272 NMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEF 331
           N+GSAGG  GGT+LFVGDLHWWTTDAELE ELCKYGPLKEVKFYDEKASGKSKGYCQVEF
Sbjct: 241 NVGSAGGGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEF 300

Query: 332 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPN 391
           YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVK+MGEAQVNRNQQ++QATNPQARR PN
Sbjct: 301 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPN 360

Query: 392 DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGI 451
           DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR RGGG+GGRGI
Sbjct: 361 DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGRGI 420

Query: 452 MGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 511
           MGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGILSS
Sbjct: 421 MGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGILSS 480

Query: 512 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHG 571
           FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE G
Sbjct: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQG 540

Query: 572 GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 631
           GGRA ESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDRRYRDDRDVGY
Sbjct: 541 GGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 600

Query: 632 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDR 691
           DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHH+RDRER+R
Sbjct: 601 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHERDRERER 660

Query: 692 DRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRT--HSKSRLSQEEENRSRSRDA 751
           DRDRDRYK+DR+R+SDHHRYRDREPEH+EDW+RGRSSRT  HSKSRLSQEEE+RSRSRDA
Sbjct: 661 DRDRDRYKDDRERYSDHHRYRDREPEHDEDWERGRSSRTHSHSKSRLSQEEESRSRSRDA 715

Query: 752 DYGKRRRLTSE 760
           DYGKRRRLTSE
Sbjct: 721 DYGKRRRLTSE 715

[Close]

BLAST of CaUC09G177740 vs. ExPASy TrEMBL
Match: A0A6J1F726 (cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita moschata OX=3662 GN=LOC111442737 PE=4 SV=1)

HSP 1 Score: 1251.5 bits (3237), Expect = 0.0e+00
Identity = 666/732 (90.98%), Postives = 685/732 (93.58%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGDGGRSVSERVTEGYNQIPD 151
           DDLGFKSEEEPKMEPPA VPP+SGASIPG GGG T+V GLGDGG SV+ERVTEGYNQIPD
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQP 211
           LR NEMAIR G GSGPP+ GGGGIRVELGQGSK NELEERSSNNVA HQ    PQ QPQP
Sbjct: 121 LRTNEMAIRVGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAAHQAP--PQQQPQP 180

Query: 212 QTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN 271
             Q+Q   QPQPQPQ Q QH  Q  Q GVLGNP SVENEGLLRQGGGVNVNGVGGNGFGN
Sbjct: 181 LQQLQPPAQPQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGN 240

Query: 272 MGSA----GGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQ 331
           +G+A    GG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQ
Sbjct: 241 VGNAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQ 300

Query: 332 VEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARR 391
           VEFYDPSAATACKEGMNGH+FNGRPCVVAYASPFSVKRMGEAQVNRNQQM+QATNPQARR
Sbjct: 301 VEFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARR 360

Query: 392 GPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGG 451
           GPND VGK+GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGG
Sbjct: 361 GPNDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGG 420

Query: 452 RGIMGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGI 511
           RGIMGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGI
Sbjct: 421 RGIMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGI 480

Query: 512 LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSE 571
           LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSE
Sbjct: 481 LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSE 540

Query: 572 EHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRD 631
           EHGGGRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD   
Sbjct: 541 EHGGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD--- 600

Query: 632 VGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRE 691
              DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRD+ERSRDYERGHHDRDR+
Sbjct: 601 ---DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRD 660

Query: 692 RDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRD 751
           RDRDRDRDRYKEDRDR+SDHHRYRDREPEH+EDW+RGRSSRTHSKSRL QEEENRSR+RD
Sbjct: 661 RDRDRDRDRYKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRTRD 720

Query: 752 ADYGKRRRLTSE 760
           ADYGKRRRLTSE
Sbjct: 721 ADYGKRRRLTSE 724

[Close]

BLAST of CaUC09G177740 vs. ExPASy TrEMBL
Match: A0A6J1ILS2 (cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxima OX=3661 GN=LOC111476425 PE=4 SV=1)

HSP 1 Score: 1245.0 bits (3220), Expect = 0.0e+00
Identity = 665/732 (90.85%), Postives = 682/732 (93.17%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGG G G DQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGLGVGADQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEEPKMEPPAPVPPSSGASIPGIGGGATEVAGLGDGGRSVSERVTEGYNQIPD 151
           DDLGFKSEEEPKMEPPA VPP+SGASIPG GGG T+V GLGDGG SV+ERVTEGYNQIPD
Sbjct: 61  DDLGFKSEEEPKMEPPAAVPPTSGASIPGFGGGTTDVPGLGDGGHSVAERVTEGYNQIPD 120

Query: 152 LRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQP 211
           LRANEMAIR G GSGPP+ GGGGIRVELGQGSK NELEERSSNNVA HQ     QPQPQ 
Sbjct: 121 LRANEMAIRVGAGSGPPIGGGGGIRVELGQGSKTNELEERSSNNVAAHQAPQQQQPQPQQ 180

Query: 212 QTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN 271
           Q Q    P  QPQPQ Q QH  Q  Q GVLGNP SVENEGLLRQGGGVNVNGVGGNGFGN
Sbjct: 181 QLQ----PPAQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGN 240

Query: 272 MGSA----GGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQ 331
           +GSA    GG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQ
Sbjct: 241 VGSAGGGGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQ 300

Query: 332 VEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARR 391
           VEFYDPSAATACKEGMNGH+FNGRPCVVAYASPFSVKRMGEAQVNRNQQM+QATNPQARR
Sbjct: 301 VEFYDPSAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARR 360

Query: 392 GPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGG 451
           GPND VGK+GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGG
Sbjct: 361 GPNDTVGKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGG 420

Query: 452 RGIMGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGI 511
           RGIMGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGI
Sbjct: 421 RGIMGNGGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGI 480

Query: 512 LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSE 571
           LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSE
Sbjct: 481 LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSE 540

Query: 572 EHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRD 631
           EHGGGRA ESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD   
Sbjct: 541 EHGGGRAGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRD--- 600

Query: 632 VGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRE 691
              DRERSKEKD GPDHDWPDRRPRDDRDIGRERDKDRDRDRD+ERSRDYERGHHDRDR+
Sbjct: 601 ---DRERSKEKDLGPDHDWPDRRPRDDRDIGRERDKDRDRDRDKERSRDYERGHHDRDRD 660

Query: 692 RDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRD 751
           RDRDRDRDRYKEDRDR+SDHHRYRDREPEH+EDW+RGRSSRTHSKSRL QEEENRSR+RD
Sbjct: 661 RDRDRDRDRYKEDRDRYSDHHRYRDREPEHDEDWERGRSSRTHSKSRLPQEEENRSRTRD 720

Query: 752 ADYGKRRRLTSE 760
           ADYGKRRRLTSE
Sbjct: 721 ADYGKRRRLTSE 722

[Close]

BLAST of CaUC09G177740 vs. ExPASy TrEMBL
Match: A0A6J1CCR1 (cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010455 PE=4 SV=1)

HSP 1 Score: 1200.3 bits (3104), Expect = 0.0e+00
Identity = 645/729 (88.48%), Postives = 674/729 (92.46%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 91
           MDEGEGGFGEGVDQIDQFHRNEAISAVAD+GFLGEDEDEYEDLYNDVNVGEGFLQSLRKN
Sbjct: 1   MDEGEGGFGEGVDQIDQFHRNEAISAVADEGFLGEDEDEYEDLYNDVNVGEGFLQSLRKN 60

Query: 92  DDLGFKSEEE-PKMEPPAPVPPSSGASIPGIGGGATEVAGLGDGGRSVSERVTEGYNQIP 151
           DDLGF++EEE PK+EPPA + PSSGASIPG+GGGATEVA LGDGG SV ERVTEGYNQIP
Sbjct: 61  DDLGFRNEEEPPKIEPPATLAPSSGASIPGVGGGATEVASLGDGGHSVPERVTEGYNQIP 120

Query: 152 DLRANEMAIRGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQ 211
           DLR NEMA+RGG GSGPP+ GGGGIRVELGQGSK NELEERSSNNVA HQ    PQPQPQ
Sbjct: 121 DLRTNEMAMRGGAGSGPPMGGGGGIRVELGQGSKTNELEERSSNNVAVHQAPQQPQPQPQ 180

Query: 212 PQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFG 271
                    Q Q Q QPQ QH  QP  SGVLGNPGSVEN+GLLRQ GGVNVNGVGGNG+G
Sbjct: 181 ---------QQQQQQQPQ-QHHHQPLHSGVLGNPGSVENDGLLRQ-GGVNVNGVGGNGYG 240

Query: 272 NMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEF 331
           NMGSAGG GGGTILFVGDLHWWTTDAELE ELCKYGPLKEVKF+DEKASGKSKGYCQVEF
Sbjct: 241 NMGSAGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEF 300

Query: 332 YDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPN 391
           YDPSAATACKEGMNGH+FNGRPCVVA+ASPFSVK+MGEAQVNRNQQ++QA NPQARRGPN
Sbjct: 301 YDPSAATACKEGMNGHVFNGRPCVVAFASPFSVKKMGEAQVNRNQQIAQAANPQARRGPN 360

Query: 392 DAVGKIGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGI 451
           DAVGKIGGS+I TGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMR+RGGGMGGRGI
Sbjct: 361 DAVGKIGGSNIQTGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGI 420

Query: 452 MGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 511
           MGNGGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS
Sbjct: 421 MGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSS 480

Query: 512 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHG 571
           FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMM  SGVDGPNMGMWSDPSMGGWGSEEHG
Sbjct: 481 FPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMAPSGVDGPNMGMWSDPSMGGWGSEEHG 540

Query: 572 GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDRRYRDDRDVGY 631
           GGRA ESSYGEEAGSDQQYGEGSH+RG WANSAKEKDRGSERDWSQSSDRRYRD      
Sbjct: 541 GGRAGESSYGEEAGSDQQYGEGSHDRGGWANSAKEKDRGSERDWSQSSDRRYRD------ 600

Query: 632 DRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDRERDR 691
           DRERSKEKDPGPDHDW DRRPRDDRD+GRERDK  DRDRDRE SRDYERGH   DR+RDR
Sbjct: 601 DRERSKEKDPGPDHDWQDRRPRDDRDVGRERDK--DRDRDRELSRDYERGH---DRDRDR 660

Query: 692 DRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSSRTHSKSRLSQEEENRSRSRDADY 751
           DRDRDR+KEDRDR+SDHHRYRDREPEHE++W+RGRSSRTHSKSRL QEEE+RSRSRDADY
Sbjct: 661 DRDRDRHKEDRDRYSDHHRYRDREPEHEDEWERGRSSRTHSKSRLPQEEESRSRSRDADY 707

Query: 752 GKRRRLTSE 760
           GKRRRLTS+
Sbjct: 721 GKRRRLTSD 707

[Close]

BLAST of CaUC09G177740 vs. TAIR 10
Match: AT5G55670.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 669.8 bits (1727), Expect = 2.5e-192
Identity = 433/755 (57.35%), Postives = 524/755 (69.40%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 91
           MDEG+G      DQ+DQFH+NEAISAVADDGF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 92  NDDLGFKSEEEPK--MEPPAPVPPSSG-----ASIPGIGGGATE-----VAGLGDGGRSV 151
           ND+ G ++EE+ K  ME    V P  G      SIPG+ G + E      +G G  G   
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEKEAEAESGGGGSGSGT 120

Query: 152 SERVTEGYNQIPDLRANEMA--IRGGVGSGPPVAGGGGIRVELGQGS-KNNELEERSSNN 211
              V        +++ ++++  I GG+G+G     GGG+RVELGQ S + N+LE    NN
Sbjct: 121 DVVVASSGYGAQEVKVSDVSQEIPGGIGTGT----GGGLRVELGQASNRANDLEAPRGNN 180

Query: 212 VAPHQVQPHPQPQPQPQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQ 271
           ++   +                   P P      ++L +P    V G         ++  
Sbjct: 181 ISQGLL-------------------PPPPVLGNNENLMRPVMGNVNGGIPPGPGSNMVGN 240

Query: 272 GGGVNVNGVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYD 331
           G  + + GV G G G     GG GGG  LFVGDLHWWTTDAELEAELCKYG +KEVKF+D
Sbjct: 241 GANIAMPGVVGGGTG-----GGGGGGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFD 300

Query: 332 EKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQ 391
           EKASGKSKGYCQVEFYDP AA+ACK+ +NG+ FNGRPCVV YASP+SVKRMGEAQVNR Q
Sbjct: 301 EKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQ 360

Query: 392 QMSQATNPQARRGPNDAVGK-------IGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHG 451
           Q         R GP D   K          ++ A GGN+QGG+ NRG GRGNWGRGNA G
Sbjct: 361 QAQSVIAQAKRGGPADPPSKPLVANNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGNAQG 420

Query: 452 MGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGLGATPPL-LHPQSMMGQGFDPSFGAPM 511
           MGGRGP GPMR+R  GMGGRG+MGNG  GFGQG+G  PP+ +  Q MMGQGF+ +FG PM
Sbjct: 421 MGGRGPGGPMRNRPNGMGGRGLMGNG--GFGQGMGTGPPMNMMHQPMMGQGFEQAFGGPM 480

Query: 512 GRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSG 571
            RMG YGGFPGAP P F G+LSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMP +G
Sbjct: 481 ARMGGYGGFPGAPGPQFPGLLSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPNAG 540

Query: 572 VD-GPNMGMWSDPSMGGWGS-EEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKE 631
           VD G NMGMW DP+ GGWG+ E+ G GRA ESSYGEEA SD QYGE +HERGA  N  KE
Sbjct: 541 VDGGHNMGMW-DPNSGGWGAGEDLGSGRAAESSYGEEAASDHQYGEVNHERGARPNPVKE 600

Query: 632 KDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDR 691
           K+R SER+WS SSDRR R+D+D GY+R+  +EKD G  +D P+RR RDDRD GRER+++ 
Sbjct: 601 KERASEREWSGSSDRRNREDKDAGYERDIPREKDVGHGYDMPERRHRDDRDTGREREREH 660

Query: 692 DRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDR-EPEHEEDWDRG 751
              +DRERSR+     H RDRE  R+R+RDR++E+R+R+   HR R R EPEH+E+W+RG
Sbjct: 661 -HHKDRERSRE-----HVRDRE--RERERDRHREERERYGGDHRTRHRDEPEHDEEWNRG 710

Query: 752 RSSRTHSKSRLSQEEENRSRSRDADYGKRRRLTSE 760
           RSSR H+KSRLS+E+ +RS+SRD DYGKRRRLT+E
Sbjct: 721 RSSRGHNKSRLSREDNHRSKSRDTDYGKRRRLTTE 710

[Close]

BLAST of CaUC09G177740 vs. TAIR 10
Match: AT5G55670.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 448.0 bits (1151), Expect = 1.5e-125
Identity = 339/752 (45.08%), Postives = 419/752 (55.72%), Query Frame = 0


Query: 32  MDEGEGGFGEGVDQIDQFHRNEAISAVADDGFLGEDE-DEYEDLYNDVNVGEGFLQSLRK 91
           MDEG+G      DQ+DQFH+NEAISAVADDGF+ E+E D+YEDLYNDVNVGEGFLQS++K
Sbjct: 1   MDEGDGR-----DQMDQFHQNEAISAVADDGFMAEEEDDDYEDLYNDVNVGEGFLQSMKK 60

Query: 92  NDDLGFKSEEEPK--MEPPAPVPPSSG-----ASIPGIGGGATE-----VAGLGDGGRSV 151
           ND+ G ++EE+ K  ME    V P  G      SIPG+ G + E      +G G  G   
Sbjct: 61  NDEAGSRNEEKEKVNMEEEDRVEPVLGEAEVSISIPGLVGESVEKEAEAESGGGGSGSGT 120

Query: 152 SERVTEGYNQIPDLRANEMA--IRGGVGSGPPVAGGGGIRVELGQGS-KNNELEERSSNN 211
              V        +++ ++++  I GG+G+G     GGG+RVELGQ S + N+LE    NN
Sbjct: 121 DVVVASSGYGAQEVKVSDVSQEIPGGIGTGT----GGGLRVELGQASNRANDLEAPRGNN 180

Query: 212 VAPHQVQPHPQPQPQPQTQIQTHPQPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQ 271
           ++   +                   P P      ++L +P    V G         ++  
Sbjct: 181 ISQGLL-------------------PPPPVLGNNENLMRPVMGNVNGGIPPGPGSNMVGN 240

Query: 272 GGGVNVNGVGGNGFGNMGSAGGSGGGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYD 331
           G  + + GV G G G     GG GGG  LFVGDLHWWTTDAELEAELCKYG +KEVKF+D
Sbjct: 241 GANIAMPGVVGGGTG-----GGGGGGAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFD 300

Query: 332 EKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQ 391
           EKASGKSKGYCQVEFYDP AA+ACK+ +NG+ FNGRPCVV YASP+SVKRMGEAQVNR Q
Sbjct: 301 EKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQ 360

Query: 392 QMSQATNPQARRGPNDAVGK-------IGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHG 451
           Q         R GP D   K          ++ A GGN+QGG+ NRG GRGNWGRGNA G
Sbjct: 361 QAQSVIAQAKRGGPADPPSKPLVANNNNNNNNNAIGGNFQGGE-NRGFGRGNWGRGNAQG 420

Query: 452 MGGRGPAGPMRSRGGGMGGRGIMGNGGNGFGQGLGATPPLLHPQSMMGQGFDPSFGAPMG 511
           MGGRGP GPMR+R  GM                                           
Sbjct: 421 MGGRGPGGPMRNRPNGM------------------------------------------- 480

Query: 512 RMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGV 571
                                                                       
Sbjct: 481 ------------------------------------------------------------ 540

Query: 572 DGPNMGMWSDPSMGGWGSEEHGGGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDR 631
                                 GGRA ESSYGEEA SD QYGE +HERGA  N  KEK+R
Sbjct: 541 ----------------------GGRAAESSYGEEAASDHQYGEVNHERGARPNPVKEKER 585

Query: 632 GSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRD 691
            SER+WS SSDRR R+D+D GY+R+  +EKD G  +D P+RR RDDRD GRER+++    
Sbjct: 601 ASEREWSGSSDRRNREDKDAGYERDIPREKDVGHGYDMPERRHRDDRDTGREREREH-HH 585

Query: 692 RDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHHRYRDR-EPEHEEDWDRGRSS 751
           +DRERSR+     H RDRE  R+R+RDR++E+R+R+   HR R R EPEH+E+W+RGRSS
Sbjct: 661 KDRERSRE-----HVRDRE--RERERDRHREERERYGGDHRTRHRDEPEHDEEWNRGRSS 585

Query: 752 RTHSKSRLSQEEENRSRSRDADYGKRRRLTSE 760
           R H+KSRLS+E+ +RS+SRD DYGKRRRLT+E
Sbjct: 721 RGHNKSRLSREDNHRSKSRDTDYGKRRRLTTE 585

[Close]

BLAST of CaUC09G177740 vs. TAIR 10
Match: AT1G13190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 230.7 bits (587), Expect = 3.9e-60
Identity = 266/730 (36.44%), Postives = 353/730 (48.36%), Query Frame = 0


Query: 55  ISAVADDGFLGEDEDEYEDLYNDVNVGEGFLQSLRKNDDLGFKSEEEPKMEPPAPVPPSS 114
           I A+AD+  +G D+DEY+DLY+DVNVGE F           F++  +P  +PPA V  S+
Sbjct: 21  IPALADEELMG-DDDEYDDLYSDVNVGESF-----------FQAHNQP--QPPAQVNTSN 80

Query: 115 G---------ASIPGIG---GGATEVAGLGDGGR---SVSERVTEGYNQIPDLRANEMAI 174
                     A+ P +G   GG  E     DGG    S  +  ++ Y Q     A  + I
Sbjct: 81  ASLQAQNSHVAAEPRMGIVSGGTVEGKYRNDGGHNGISGPDTRSDVYPQASSFGAKGLNI 140

Query: 175 RGGVGSGPPVAGGGGIRVELGQGSKNNELEERSSNNVAPHQVQPHPQPQPQPQTQIQTHP 234
              + S   +A  G   V L     NN     ++ NV    V       PQ   QI   P
Sbjct: 141 --DIQSN-KIAQQGSTTVVL-----NNHGFSGNAVNVPEMPVHNSYGAPPQGAQQI---P 200

Query: 235 QPQPQPQPQPQHLQQPSQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNMGSAGGSG 294
             Q    P     + P+QS V+ N                                    
Sbjct: 201 VSQMSVNPNVMMNKSPTQSFVVDN------------------------------------ 260

Query: 295 GGTILFVGDLHWWTTDAELEAELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATAC 354
           G T+LFVG+LHWWTTDAE+E+ L +YG +KE+KF+DE+ SGKSKGYCQVEFYD +AA AC
Sbjct: 261 GNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAAC 320

Query: 355 KEGMNGHIFNGRPCVVAYASPFSVKRMGEAQVNRNQQMSQATNPQARRGPNDAVGKIGGS 414
           KEGMNG IFNG+ CVVA+ASP ++K+MG     RNQ  +Q  N   RR  N+ +G+  G+
Sbjct: 321 KEGMNGFIFNGKACVVAFASPETLKQMGANFTGRNQGQNQIQN---RRPLNEGMGR--GN 380

Query: 415 SIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRSRGGGMGGRGI----MGNGG 474
           +     N Q GD  R  GRG + RG   GMG RG A      GG M GRG+     G+G 
Sbjct: 381 NNNNNMNTQNGDGGRNYGRGGFARG-GQGMGNRGGAW-----GGAMRGRGVNNMASGSGA 440

Query: 475 NGFGQGLG--ATPPLLHPQSMMGQ-GFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFP 534
             +G GL   A   ++HPQ MMG  GFDP+F   MGR   YGG+ G   P   G+  S+P
Sbjct: 441 GPYGPGLAGPAFGGMMHPQGMMGAGGFDPTF---MGRGAGYGGYSGIAYP---GMPHSYP 500

Query: 535 PVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPN-MGMWSDPSMGGWGSEEHG- 594
            V  +G+ G+APHVNPAFFG      GMG M +SG++G +   MWS+ +  G G EE G 
Sbjct: 501 GVNAMGMVGIAPHVNPAFFG-----TGMGTMGSSGMNGVHAAAMWSEAN--GGGGEEGGS 560

Query: 595 --GGRADESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRG-SERDWSQSS-DRRYRDDR 654
             GG  DE+   EE  S                  ++K+R  +ERDWS++S DRR++  R
Sbjct: 561 EYGGYEDETQEKEEKPS------------------RDKERATTERDWSENSGDRRHKSHR 571

Query: 655 DVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDKDRDRDRDRERSRDYERGHHDRDR 714
           +                                E+D  R+                    
Sbjct: 621 E--------------------------------EKDSHRE-------------------- 571

Query: 715 ERDRDRDRDRYKEDRDRFSDHHRYRDREPEHEEDWDRGRSS-RTHSKSRLSQEEENRSRS 756
                     YK+ RDR SD             ++DRG+SS ++ S+SR+S E+++RSRS
Sbjct: 681 ----------YKQQRDRDSD-------------EFDRGQSSLKSRSRSRMS-EDDHRSRS 571

[Close]

BLAST of CaUC09G177740 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-04
Identity = 59/152 (38.82%), Postives = 75/152 (49.34%), Query Frame = 0


Query: 604 KEKDRGSERDWSQSSDRRYRDDRDVGYDRERSKEKDPGPDHDWPDRRPRDDRDIGRERDK 663
           K+  + SE+D     D+    DRD   DR+R K +D                   R+R+K
Sbjct: 44  KDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRD-------------------RDREK 103

Query: 664 DRDRDRDRERSRDYERGHHDRDRERDRDRDRDRYKEDRDRFSDHH-RYRDREPEHEEDWD 723
            RDRDRDRERS+D +R  H RDR RDR R+R   ++D D   DHH R RDR+     D D
Sbjct: 104 SRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLD--DDHHRRSRDRDRRRSRDRD 163

Query: 724 RGRSSRTHSKSRLSQEEENRSRSRDADYGKRR 755
           R    R  S+SR     E RSRS      + R
Sbjct: 164 REVRHRRRSRSRSRSRSERRSRSEHRHKSEHR 174

The following BLAST results are available for this feature:

BLAST of CaUC09G177740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897335.1	0.0e+00	93.82	cleavage and polyadenylation specificity factor subunit 6-like [Benincasa hispid...	[more]
XP_038897113.1	0.0e+00	92.45	uncharacterized PE-PGRS family protein PE_PGRS46-like [Benincasa hispida]	[more]
XP_031744545.1	0.0e+00	92.18	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sat...	[more]
XP_031744552.1	0.0e+00	91.34	cleavage and polyadenylation specificity factor subunit CG7185 [Cucumis sativus]...	[more]
TYK07956.1	0.0e+00	91.52	cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. mak...	[more]

BLAST of CaUC09G177740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR40	5.0e-04	45.00	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]

BLAST of CaUC09G177740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3G6	0.0e+00	91.50	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV...	[more]
A0A5D3CC60	0.0e+00	91.52	Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. m...	[more]
A0A6J1F726	0.0e+00	90.98	cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita...	[more]
A0A6J1ILS2	0.0e+00	90.85	cleavage and polyadenylation specificity factor subunit 6-like OS=Cucurbita maxi...	[more]
A0A6J1CCR1	0.0e+00	88.48	cleavage and polyadenylation specificity factor subunit 6 OS=Momordica charantia...	[more]

BLAST of CaUC09G177740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55670.1	2.5e-192	57.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55670.2	1.5e-125	45.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G13190.1	3.9e-60	36.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60900.1	1.0e-04	38.82	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 283..356 e-value: 9.2E-20 score: 81.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 284..353 e-value: 1.3E-13 score: 50.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 282..360 score: 13.61777
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 195..377 e-value: 5.7E-24 score: 86.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..386
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 549..759
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 370..483
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 598..759
None	No IPR available	PANTHER	PTHR23204:SF9	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE	coord: 32..758
None	No IPR available	CDD	cd12372	RRM_CFIm68_CFIm59	coord: 284..357 e-value: 5.71681E-34 score: 122.404
IPR034772	CPSF6/7 family	PANTHER	PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	coord: 32..758
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 280..378

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G177740.1	CaUC09G177740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding