Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAGTTTGGTCCCTGGGGGAGCGAAGACAGTGAGGTCTCGTTTAGATTCTTGAAGTGGTGGAGGTTTGTCGTTGGGCAAACATCAATACAGAACGGGCATTTGCCACAGCTGGGAGGATTCTGGAAACTGTCGCTTTGGCCACAGATGCCAGGTTAGTTATTTCATCCCACCGTAATGATACGATCTGAATTATTAGCTCCACAGATTTATTGGCCTCTATGCAGTATCTTTGTTTATTACTTAAAAGTCAACTTAACTGAGATTCGATTGCTAATTAGACAAATGGATAAAAAAGTTATTCAGTACTATAAGATTAGAAGTTCATGTTCAAGTTTAATGGGTAACTTTTAGATTGAAGTGTTTCTTTATTATTTAATGTGGGTTAATTTTCCAATTATTCTTGTTTCATGTGGGTAGACTGAATTTATTTATCTTTTGAATAGCTTATTGAAATAAACTGAGGCATTAACAGAGTGGTAGATGAATCAATCTCGCTTAGCAAAGGTTTTATGAGAAAGTTCGGAGGCTGATTCAAGGATGGGATATATATCCCACTCTCAATTTTGTTTAGAATTTGGTCTCAGACAATGAACTCAGTTCTAATGCGTTTATGGACAGAGCGAAACAGTAGGTTGGCTGGCAAAATTGATGCACTTATGTATTATCACACCAAGTTGTTAGATTAGCAGATAAATGAACCATTGACTTTTTCAAAAGTTGGATTAATCATAGACTTCGACAAGAGCTCGACATTCCCTTTCAATGGTTGGATTGAGTACCAAATTGAGTTGATTGGAGCACCATGATTCATGACATGAATTTGAAGCCAAAGAAAACATAACACAACTATTTTTTATTTTAATATCCGTGAGTGTTATGACCAACTTATGTGTATCTCGTCATTTGGGTCTAGCTCACAGGACAACCCGTCAGACTGTACAACATTTGAGTGTCAAGGAAACCATAGGGATATTAAACCCTAGGTAAATAGCGACCATGGATTGAATCCATGACCTCTTAGCCCTTTGTCAAGGTCATGCCCATTTACCACTAGGTCAACTCATAATGATTCACAACACAACTAACTTCCAATATCCATTAATTATTGACATTGTGTGCTCTTGATTTATAATAATGGATATATTATTCAATTTCTTCTGTAATTCAATCTTGGGGGACAGGGACTTGGGATTGATCCTCCTCTTTAATACTTTAAATAATTAGGTTGGCAGATATTATTCCAAGAATGGGACGAAAAGCTTGAATTTCTCAAATTTTTTTTATCATCCATATATAATCTAACAATTATAAACCTATAGAATTTGAGTCCAATGATCTAAAATTTAATTGATTAAATATTTTGTTGTTGTTTTTTTTTTTTTTGGTGACTACAACAATTGTGAGGTGAGGATGGAAGACTGAACCTTCCACCTCTAAGATAGAAGTTCATGTCAATTACCATTGAACTAAGCTCACTTTGACAAATATTTTGTTTAGTTACTCATTTCATTTATCTATTCACCAAAAAGATTGGGGTCCTTTGTAATTTTTATGTAATTGTGATGGTGCATTATGGTATATATAGAGAGGAAAGTTCGCACTTAGAACCTCATAGCTATTTTGACACTATGTAAAACTATCATTATACTCAAAATTTTAGCAGTATAGGTTAAATTGCTAATCTTTTCTAATAATATTCTCAACCATACATGTTGAAATTGATGGAAAATAGTTTGATTTGCATTATACGGTGGTTTGATATGGTTTTTTTTTTTTTAATTGTATTTTCTGTTTGCAATTTGCACATAGATAGGAGGACCTTATGCTTACGTTATAGTGCACTTATTGCCTTGAACTTGGTACTGTGCTATGGATGTCTCACCAATTGCAAAATTATCATAGTCCTAATTTGATGGCAGGATTTATCGCAGTTTTCATTTTTTTTTTCATGCTTTTGCCAATCTGCATCGTGGTGCCCTCCCACCATGAAATTCAAGCGTAGATTTGTCGCGATTTTAGAATTAAGTCCAGATCAACCAACCACCCAAAGATGGTTCGCGTAATTTGAAAATTAACGTCATATTTTACTTACAATTCATTCAGATTGCAATCGGAACTCAGTTATTCGCAAAAACTCCCTTACACTAACACCAACCTTCGTCTGAGGAAACATGAATTAGCTCACAGTACCCACACAGTACATACGGAAGATACCAGAAAACGGCCAACAACAACCATTTCAGAAGAAACGTTACTGTGA
mRNA sequence
ATGAAGAATGGTGGAGGTTTGTCGTTGGGCAAACATCAATACAGAACGGGCATTTGCCACAGCTGGGAGGATTCTGGAAACTGTCGCTTTGGCCACAGATGCCAGACAATGAACTCAGTTCTAATGCGTTTATGGACAGAGCGAAACAGTAGGTTGGCTGGCAAAATTGATGCACTTATATTGCAATCGGAACTCAGTTATTCGCAAAAACTCCCTTACACTAACACCAACCTTCGTCTGAGGAAACATGAATTAGCTCACAGTACCCACACAGTACATACGGAAGATACCAGAAAACGGCCAACAACAACCATTTCAGAAGAAACGTTACTGTGA
Coding sequence (CDS)
ATGAAGAATGGTGGAGGTTTGTCGTTGGGCAAACATCAATACAGAACGGGCATTTGCCACAGCTGGGAGGATTCTGGAAACTGTCGCTTTGGCCACAGATGCCAGACAATGAACTCAGTTCTAATGCGTTTATGGACAGAGCGAAACAGTAGGTTGGCTGGCAAAATTGATGCACTTATATTGCAATCGGAACTCAGTTATTCGCAAAAACTCCCTTACACTAACACCAACCTTCGTCTGAGGAAACATGAATTAGCTCACAGTACCCACACAGTACATACGGAAGATACCAGAAAACGGCCAACAACAACCATTTCAGAAGAAACGTTACTGTGA
Protein sequence
MKNGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQTMNSVLMRLWTERNSRLAGKIDALILQSELSYSQKLPYTNTNLRLRKHELAHSTHTVHTEDTRKRPTTTISEETLL
Homology
BLAST of CaUC09G177680 vs. NCBI nr
Match:
XP_022974010.1 (uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima] >XP_022974011.1 uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima])
HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. NCBI nr
Match:
XP_023536047.1 (mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. NCBI nr
Match:
XP_022974000.1 (mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima])
HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. NCBI nr
Match:
XP_022974012.1 (mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima])
HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. NCBI nr
Match:
XP_023536031.1 (uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536040.1 uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. ExPASy TrEMBL
Match:
A0A6J1ICU5 (uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472626 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. ExPASy TrEMBL
Match:
A0A6J1IEX1 (uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. ExPASy TrEMBL
Match:
A0A6J1I940 (mRNA decay activator protein ZFP36L2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472626 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. ExPASy TrEMBL
Match:
A0A6J1ICT5 (mRNA decay activator protein ZFP36L2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)
HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query: 3 NGGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
+GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 182 SGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
BLAST of CaUC09G177680 vs. ExPASy TrEMBL
Match:
A0A6J1EQM3 (uncharacterized protein LOC111436579 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436579 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0
Query: 4 GGGLSLGKHQYRTGICHSWEDSGNCRFGHRCQ 36
GGG SL K+QYRT IC SWEDSG+CRFGH+CQ
Sbjct: 183 GGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQ 214
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022974010.1 | 2.2e-06 | 75.76 | uncharacterized protein LOC111472626 isoform X1 [Cucurbita maxima] >XP_022974011... | [more] |
| XP_023536047.1 | 2.2e-06 | 75.76 | mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita pepo subsp. pepo... | [more] |
| XP_022974000.1 | 2.2e-06 | 75.76 | mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima] | [more] |
| XP_022974012.1 | 2.2e-06 | 75.76 | mRNA decay activator protein ZFP36L2-like isoform X2 [Cucurbita maxima] | [more] |
| XP_023536031.1 | 2.2e-06 | 75.76 | uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1ICU5 | 1.1e-06 | 75.76 | uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
| A0A6J1IEX1 | 1.1e-06 | 75.76 | uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
| A0A6J1I940 | 1.1e-06 | 75.76 | mRNA decay activator protein ZFP36L2-like isoform X2 OS=Cucurbita maxima OX=3661... | [more] |
| A0A6J1ICT5 | 1.1e-06 | 75.76 | mRNA decay activator protein ZFP36L2-like isoform X2 OS=Cucurbita maxima OX=3661... | [more] |
| A0A6J1EQM3 | 1.4e-06 | 78.13 | uncharacterized protein LOC111436579 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
