CaUC09G169670 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC09G169670
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Auxin responsive SAUR protein
Location	Ciama_Chr09: 13393704 .. 13394123 (+)
RNA-Seq Expression	CaUC09G169670
Synteny	CaUC09G169670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCTTGGTCCTCCCTTGCTACATCATGAAGAGACGACAACGGAGATCAAGCCGATCGCGTCTCAGCTACCACCGTCTCAACAAATCCGACCTCGGCCGCATCGATGGAGCGGAGAGTAGTCTAGTGAAGGTTGTGGCAGGAAAAGAGAAGAGAGAATTCTTAGTAGACCCTATTGTGTTGGAAGAAAATCCGTTTCGAATTTTGATCGAAAAGGGAGGAGATGACGATGAAGATGAGGATGAGGATGGAGATGAAGATGAAGAAGATGAAAATGGAAAAAGGAAAAGGGTTATATTTGTTGATGTGGATGCTATTTTGTTCGAGCACTTGCTGTGGCTCATGTACAACGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

mRNA sequence

ATGAATTGCTTGGTCCTCCCTTGCTACATCATGAAGAGACGACAACGGAGATCAAGCCGATCGCGTCTCAGCTACCACCGTCTCAACAAATCCGACCTCGGCCGCATCGATGGAGCGGAGAGTAGTCTAGTGAAGGTTGTGGCAGGAAAAGAGAAGAGAGAATTCTTAGTAGACCCTATTGTGTTGGAAGAAAATCCGTTTCGAATTTTGATCGAAAAGGGAGGAGATGACGATGAAGATGAGGATGAGGATGGAGATGAAGATGAAGAAGATGAAAATGGAAAAAGGAAAAGGGTTATATTTGTTGATGTGGATGCTATTTTGTTCGAGCACTTGCTGTGGCTCATGTACAACGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Coding sequence (CDS)

ATGAATTGCTTGGTCCTCCCTTGCTACATCATGAAGAGACGACAACGGAGATCAAGCCGATCGCGTCTCAGCTACCACCGTCTCAACAAATCCGACCTCGGCCGCATCGATGGAGCGGAGAGTAGTCTAGTGAAGGTTGTGGCAGGAAAAGAGAAGAGAGAATTCTTAGTAGACCCTATTGTGTTGGAAGAAAATCCGTTTCGAATTTTGATCGAAAAGGGAGGAGATGACGATGAAGATGAGGATGAGGATGGAGATGAAGATGAAGAAGATGAAAATGGAAAAAGGAAAAGGGTTATATTTGTTGATGTGGATGCTATTTTGTTCGAGCACTTGCTGTGGCTCATGTACAACGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Protein sequence

MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNVEEILDFYAQDF

Homology

[Close]

BLAST of CaUC09G169670 vs. NCBI nr
Match: XP_038888374.1 (uncharacterized protein LOC120078224 [Benincasa hispida])

HSP 1 Score: 229.2 bits (583), Expect = 2.2e-56
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPI 60
           M+CLVLPCY+MKRR+RRS+R RL YHRLNKS++GR+DGAESSLVKVVAGKEKREFLVDP 
Sbjct: 1   MDCLVLPCYVMKRRRRRSTRPRLGYHRLNKSNVGRLDGAESSLVKVVAGKEKREFLVDPF 60

Query: 61  VLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYNDC 120
           VLEENPFRILIEKGGDD+EDE+ED         GKRKRVIFVDVD+ILFEHLLWLMYNDC
Sbjct: 61  VLEENPFRILIEKGGDDNEDEEED---------GKRKRVIFVDVDSILFEHLLWLMYNDC 120

Query: 121 SSLFKLNVEEILDFYAQDF 140
           SSLFKLNVEEILDFYAQDF
Sbjct: 121 SSLFKLNVEEILDFYAQDF 130

[Close]

BLAST of CaUC09G169670 vs. NCBI nr
Match: XP_008465964.1 (PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 4.3e-52
Identity = 113/141 (80.14%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  L YHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYN 120
           P VLEENPFR LIEKGGD D+DED DGD      +GK+KRVIFVDVDAILFEHLLWLMYN
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGD------HGKKKRVIFVDVDAILFEHLLWLMYN 144

Query: 121 DCSSLFKLNVEEILDFYAQDF 140
           DCSSLFKLNVEEILDFYAQDF
Sbjct: 145 DCSSLFKLNVEEILDFYAQDF 159

[Close]

BLAST of CaUC09G169670 vs. NCBI nr
Match: KAA0038583.1 (Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin responsive SAUR protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 4.3e-52
Identity = 113/141 (80.14%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  L YHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYN 120
           P VLEENPFR LIEKGGD D+DED DGD      +GK+KRVIFVDVDAILFEHLLWLMYN
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGD------HGKKKRVIFVDVDAILFEHLLWLMYN 120

Query: 121 DCSSLFKLNVEEILDFYAQDF 140
           DCSSLFKLNVEEILDFYAQDF
Sbjct: 121 DCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of CaUC09G169670 vs. NCBI nr
Match: XP_011652654.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical protein Csa_001277 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-50
Identity = 115/144 (79.86%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MNCLVLPCYIMK-RRQRRSSRSRLSYHRLNKSDLGRI----DGAESSLVKVVAGKEKREF 60
           M CLVLPCY+MK RR+RRS++  L YHRLNKS+ GR     D AESSLVKVVAGKE+REF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWL 120
           LVDP VLEENPFRILIEKGGDDDEDED D         GKRKRVIFVDVDAILFEHLLWL
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDEDGD---------GKRKRVIFVDVDAILFEHLLWL 120

Query: 121 MYNDCSSLFKLNVEEILDFYAQDF 140
           MYNDCSSLFKLNVEEILDFYAQDF
Sbjct: 121 MYNDCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of CaUC09G169670 vs. NCBI nr
Match: XP_022931160.1 (uncharacterized protein LOC111437423 [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 9.4e-31
Identity = 84/144 (58.33%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 1   MNCLV--LPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVD 60
           M+CLV  LPCY+MKRR+RR++  RL Y RLNKS+         SLV+VV GKE+ EFLVD
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTA-PRLPYRRLNKSE---------SLVRVVVGKERTEFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKR---VIFVDVDAILFEHLLWL 120
           P VLEENPFR+L+EKG               E++ GKR+R   +IFVDVDAILFEH LWL
Sbjct: 61  PFVLEENPFRVLMEKG-------------RFEEKQGKRRREEHIIFVDVDAILFEHFLWL 120

Query: 121 MYNDCSSLFKLNVEEILDFYAQDF 140
           +YND SSL  LN++EIL FY+QDF
Sbjct: 121 IYNDSSSLLTLNLDEILHFYSQDF 121

[Close]

BLAST of CaUC09G169670 vs. ExPASy TrEMBL
Match: A0A5D3E5S1 (Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004380 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.1e-52
Identity = 113/141 (80.14%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  L YHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYN 120
           P VLEENPFR LIEKGGD D+DED DGD      +GK+KRVIFVDVDAILFEHLLWLMYN
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGD------HGKKKRVIFVDVDAILFEHLLWLMYN 120

Query: 121 DCSSLFKLNVEEILDFYAQDF 140
           DCSSLFKLNVEEILDFYAQDF
Sbjct: 121 DCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of CaUC09G169670 vs. ExPASy TrEMBL
Match: A0A1S3CQ48 (uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.1e-52
Identity = 113/141 (80.14%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDG--AESSLVKVVAGKEKREFLVD 60
           M CLVLPCY+MKRR+RRS+R  L YHRL+KS+ GR D   AESSLVKVVAGKE+REFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYN 120
           P VLEENPFR LIEKGGD D+DED DGD      +GK+KRVIFVDVDAILFEHLLWLMYN
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGD------HGKKKRVIFVDVDAILFEHLLWLMYN 144

Query: 121 DCSSLFKLNVEEILDFYAQDF 140
           DCSSLFKLNVEEILDFYAQDF
Sbjct: 145 DCSSLFKLNVEEILDFYAQDF 159

[Close]

BLAST of CaUC09G169670 vs. ExPASy TrEMBL
Match: A0A0A0LK59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.1e-51
Identity = 115/144 (79.86%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 1   MNCLVLPCYIMK-RRQRRSSRSRLSYHRLNKSDLGRI----DGAESSLVKVVAGKEKREF 60
           M CLVLPCY+MK RR+RRS++  L YHRLNKS+ GR     D AESSLVKVVAGKE+REF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWL 120
           LVDP VLEENPFRILIEKGGDDDEDED D         GKRKRVIFVDVDAILFEHLLWL
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDEDGD---------GKRKRVIFVDVDAILFEHLLWL 120

Query: 121 MYNDCSSLFKLNVEEILDFYAQDF 140
           MYNDCSSLFKLNVEEILDFYAQDF
Sbjct: 121 MYNDCSSLFKLNVEEILDFYAQDF 135

[Close]

BLAST of CaUC09G169670 vs. ExPASy TrEMBL
Match: A0A6J1EYP5 (uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC111437423 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.5e-31
Identity = 84/144 (58.33%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 1   MNCLV--LPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVD 60
           M+CLV  LPCY+MKRR+RR++  RL Y RLNKS+         SLV+VV GKE+ EFLVD
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTA-PRLPYRRLNKSE---------SLVRVVVGKERTEFLVD 60

Query: 61  PIVLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKR---VIFVDVDAILFEHLLWL 120
           P VLEENPFR+L+EKG               E++ GKR+R   +IFVDVDAILFEH LWL
Sbjct: 61  PFVLEENPFRVLMEKG-------------RFEEKQGKRRREEHIIFVDVDAILFEHFLWL 120

Query: 121 MYNDCSSLFKLNVEEILDFYAQDF 140
           +YND SSL  LN++EIL FY+QDF
Sbjct: 121 IYNDSSSLLTLNLDEILHFYSQDF 121

[Close]

BLAST of CaUC09G169670 vs. ExPASy TrEMBL
Match: B9S1G2 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0864910 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.1e-29
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPI 60
           M+CLVLP  I+  R+R ++ SRL Y  L +   G +D      VKVV GKEKREFLVDP 
Sbjct: 1   MDCLVLPVSIL--RKRYTAGSRLGYRPLTEDGFGGLDRP----VKVVVGKEKREFLVDPF 60

Query: 61  VLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVDVDAILFEHLLWLMYNDC 120
           VLEE+PFR+LIE          + G  D   ++ K++R IFVDVDAILFEH+LWLMYNDC
Sbjct: 61  VLEESPFRVLIE--------TVKKGSYDHNFDDMKKRRTIFVDVDAILFEHMLWLMYNDC 120

Query: 121 SSLFKLNVEEILDFYAQDF 140
           SSLF+LN+EEI+DFYAQD+
Sbjct: 121 SSLFQLNLEEIIDFYAQDY 125

[Close]

BLAST of CaUC09G169670 vs. TAIR 10
Match: AT2G35290.1 (unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-19
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 1   MNCLVLPCYIMKRRQRRSSRSRLSYHRLNKSDLGRIDGAESSLVKVVAGKEKREFLVDPI 60
           M CL+ P   ++R     SR R +Y  L        +  E  +++VV GKEK+EF+V+P 
Sbjct: 1   MGCLISPVMKLRRLSSADSR-RFAYRNL-------AENMEDPVIRVVVGKEKKEFMVEPY 60

Query: 61  VLEENPFRILIEKGGDDDEDEDEDGDEDEEDENGKRKRVIFVD-VDAILFEHLLWLMYND 120
           VLEE PFR+LI    D             ++   +  RV+++D VD+ILFEHLLWL+ ND
Sbjct: 61  VLEEYPFRVLIGSAKD-----------RAKNRLNRTGRVVWLDHVDSILFEHLLWLLRND 120

Query: 121 CSSLFKLNVEEILDFYAQD 139
            S+   L+V EI++FYAQD
Sbjct: 121 ASTFSDLDVLEIIEFYAQD 120

The following BLAST results are available for this feature:

BLAST of CaUC09G169670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888374.1	2.2e-56	84.17	uncharacterized protein LOC120078224 [Benincasa hispida]	[more]
XP_008465964.1	4.3e-52	80.14	PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo]	[more]
KAA0038583.1	4.3e-52	80.14	Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin respo...	[more]
XP_011652654.1	1.1e-50	79.86	auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical prote...	[more]
XP_022931160.1	9.4e-31	58.33	uncharacterized protein LOC111437423 [Cucurbita moschata]	[more]

BLAST of CaUC09G169670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC09G169670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5S1	2.1e-52	80.14	Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CQ48	2.1e-52	80.14	uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=...	[more]
A0A0A0LK59	5.1e-51	79.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1	[more]
A0A6J1EYP5	4.5e-31	58.33	uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC1114374...	[more]
B9S1G2	1.1e-29	57.55	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0864910 PE=4 SV=1	[more]

BLAST of CaUC09G169670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35290.1	8.8e-19	41.01	unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..93
None	No IPR available	PANTHER	PTHR35296:SF3	EXPRESSED PROTEIN	coord: 1..138
None	No IPR available	PANTHER	PTHR35296	EXPRESSED PROTEIN	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC09G169670.1	CaUC09G169670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane