CaUC05G102280 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G102280
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	VQ motif-containing protein 8
Location	Ciama_Chr05: 33121019 .. 33121459 (-)
RNA-Seq Expression	CaUC05G102280
Synteny	CaUC05G102280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGTCGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

mRNA sequence

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGTCGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

Coding sequence (CDS)

ATGAGCCCACCTAAATCCTGCGAAATCAATGGCCCTCGCCCTTCTCCTCTCCTAATCCACAAAGATTCTCGTTTGATTCGTAAGCCCCAGCTCCGGCAGCCCGTCATCATTTACACCCATTCCCCCAAAATCATCCACACCCACCCAAAAGACTTCATGGCCTTGGTTCAACGCCTCACCGGCTTCACCCCACCGCCGCCGCCCTCCTTACCCTTGTCCTTGTCGTTGCCGGACAGAAATTTTAACGACAATGAATCTTCGTCGTCGTCGGAGGAGGAGAATGAATGTGGGGATCAGAAACAGAGTTTAGTGCAGAGGCAGACTAATCCTTCTCTTCTCAGATATTCTTCCGATCTTACCCCGCCGTTTTCTTCCCCTGCTTTGCTTAATTCCCTGTCCCCTTCTTTCATGGAGTTTCTTAAAGCCCTTCCTGAATTTTAA

Protein sequence

MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLSLSLPDRNFNDNESSSSSEEENECGDQKQSLVQRQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF

Homology

[Close]

BLAST of CaUC05G102280 vs. NCBI nr
Match: XP_038893302.1 (VQ motif-containing protein 8, chloroplastic [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 6.5e-59
Identity = 129/156 (82.69%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKSCEINGPRPSPLLIHKDSR IRKPQLRQPVIIYTHSPKIIHT PKDFMALVQRLT
Sbjct: 1   MSPPKSCEINGPRPSPLLIHKDSRFIRKPQLRQPVIIYTHSPKIIHTQPKDFMALVQRLT 60

Query: 61  GFT--PPPPPSLPLSLSLPDRNFNDNESSS---SSEEENECGDQKQS-----LVQRQTNP 120
           GF   PPPPPS  LSLS  +RNFNDN+SSS   + EE NECGDQKQS     LVQRQ+N 
Sbjct: 61  GFNPPPPPPPSNALSLSFSERNFNDNDSSSGLTTEEEINECGDQKQSVVLKQLVQRQSNS 120

Query: 121 SLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF 147
           SLLRYSSD+T PFSSPAL+NSLSPSFMEFLKALPEF
Sbjct: 121 SLLRYSSDVTTPFSSPALINSLSPSFMEFLKALPEF 156

[Close]

BLAST of CaUC05G102280 vs. NCBI nr
Match: XP_008466850.1 (PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA0034563.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa] >TYK09116.1 VQ motif-containing protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 188.7 bits (478), Expect = 3.5e-44
Identity = 100/146 (68.49%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPSLPLSLSLPDRNFNDNESSSSSEEENECGDQKQSLVQRQTNPSLLRYSSDLT 120
           GF PPPP         P+RN NDN+S+S    E +         ++Q+N S+L+YSSD+T
Sbjct: 61  GFNPPPPQ--------PERNSNDNDSTSGVTSEEDVN-------EKQSNCSVLKYSSDVT 120

Query: 121 PPFSSPALLNSLSPSFMEFLKALPEF 147
            PFSSPA L+SLSPSFM+FLKALPEF
Sbjct: 121 TPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of CaUC05G102280 vs. NCBI nr
Match: XP_022150646.1 (VQ motif-containing protein 8, chloroplastic [Momordica charantia])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 107/168 (63.69%), Postives = 116/168 (69.05%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KSC+INGPRPSPLLIHK SRLIRK  PQLRQP+IIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPSLPLSLSLPDRNFN---DNESSSSSEEENECGDQ-------KQSLVQRQT 120
           LTGFTPPPPP    S    DRN N   DN+SSS   EE  CGD        K+   Q Q+
Sbjct: 61  LTGFTPPPPPHADDS----DRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQS 120

Query: 121 N----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF 147
           +          P+ LRY+ D T  F+SP L NSLSPSFMEFLK LPEF
Sbjct: 121 HSFLADVPLFTPAGLRYAPDAT-SFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of CaUC05G102280 vs. NCBI nr
Match: KGN52621.2 (hypothetical protein Csa_008052 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 74/102 (72.55%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKS EINGPRPSPLLIH  SRLIRKP QLRQP+IIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGFTPPPPPSLPLSL-SLPDRNFNDNESSSSSEEENECGDQK 101
           TG  PPPP  LP +  SL +RN NDN+SSS    E +  +++
Sbjct: 61  TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQ 102

[Close]

BLAST of CaUC05G102280 vs. NCBI nr
Match: KAG7013019.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-26
Identity = 79/150 (52.67%), Postives = 92/150 (61.33%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK----PQLRQPVIIYTHSPKIIHTHPKDFMALV 60
           MSPPK   I+GPRP PLL+HK SR IRK    PQLR+PVIIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGFTPPPPPSLPLSLSLPDRNFNDNESSSSSEEENECGDQKQSLVQRQTNPSLLRYS 120
           QRLTG +PP     P        + N++ SS  +EE++ C                    
Sbjct: 61  QRLTGCSPPNADKAP--------SDNNDSSSVVTEEDSNC-------------------- 118

Query: 121 SDLTPPFSSPALLNSLSPSFMEFLKALPEF 147
               P F+  +L+NSLSPSFMEFLK LPEF
Sbjct: 121 ----PLFTPRSLVNSLSPSFMEFLKGLPEF 118

[Close]

BLAST of CaUC05G102280 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTG 64
           P P  L ++KDS +I+KP          + R PVIIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CaUC05G102280 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 57/158 (36.08%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPK 60
           M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPSLPLSLSLPDRNFNDNESSSSSEEENECGDQ-----KQSLVQ 120
           DFMALVQRLTG              +  RN +++ SS  +EE N   D       Q   Q
Sbjct: 61  DFMALVQRLTGLD-----------EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQ 120

Query: 121 RQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL 144
           RQ    +  ++      F SP  L  +SP+  +  + L
Sbjct: 121 RQKLTDMPLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of CaUC05G102280 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTH 64
          +  +I GPRPSPL +HKDS  I+KP                  R+PV+IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

[Close]

BLAST of CaUC05G102280 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 4  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYT 63
          P+S    GP+P+PL +  DS ++I+KP L                         PV IYT
Sbjct: 6  PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

[Close]

BLAST of CaUC05G102280 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 100/146 (68.49%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPSLPLSLSLPDRNFNDNESSSSSEEENECGDQKQSLVQRQTNPSLLRYSSDLT 120
           GF PPPP         P+RN NDN+S+S    E +         ++Q+N S+L+YSSD+T
Sbjct: 61  GFNPPPPQ--------PERNSNDNDSTSGVTSEEDVN-------EKQSNCSVLKYSSDVT 120

Query: 121 PPFSSPALLNSLSPSFMEFLKALPEF 147
            PFSSPA L+SLSPSFM+FLKALPEF
Sbjct: 121 TPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of CaUC05G102280 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.7e-44
Identity = 100/146 (68.49%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKPQLRQPVIIYTHSPKIIHTHPKDFMALVQRLT 60
           MSPPKS +ING RPSPLLIH DSRL+RKPQLRQP+IIYTHSPKIIHTHPKDFMALVQRLT
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRKPQLRQPLIIYTHSPKIIHTHPKDFMALVQRLT 60

Query: 61  GFTPPPPPSLPLSLSLPDRNFNDNESSSSSEEENECGDQKQSLVQRQTNPSLLRYSSDLT 120
           GF PPPP         P+RN NDN+S+S    E +         ++Q+N S+L+YSSD+T
Sbjct: 61  GFNPPPPQ--------PERNSNDNDSTSGVTSEEDVN-------EKQSNCSVLKYSSDVT 120

Query: 121 PPFSSPALLNSLSPSFMEFLKALPEF 147
            PFSSPA L+SLSPSFM+FLKALPEF
Sbjct: 121 TPFSSPAFLSSLSPSFMDFLKALPEF 131

[Close]

BLAST of CaUC05G102280 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.5e-42
Identity = 105/150 (70.00%), Postives = 119/150 (79.33%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRKP-QLRQPVIIYTHSPKIIHTHPKDFMALVQRL 60
           MSPPKS EINGPRPSPLLIH  SRLIRKP QLRQP+IIYTHSPKIIHTHPKDFMALVQRL
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRKPVQLRQPLIIYTHSPKIIHTHPKDFMALVQRL 60

Query: 61  TGFTPPPPPSLPLSL-SLPDRNFNDNESSSSSEEENECGDQKQSLVQRQTNPSLLRYSS- 120
           TG  PPPP  LP +  SL +RN NDN+SSS    E       + + ++Q+N S+L+YSS 
Sbjct: 61  TGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTE-------EDINEKQSNCSVLKYSSH 120

Query: 121 DLTPPFSSPALL-NSLSPSFMEFLKALPEF 147
           D+T PFSSPA L +SLSPSFM+FLKALPEF
Sbjct: 121 DVTTPFSSPAFLSSSLSPSFMDFLKALPEF 143

[Close]

BLAST of CaUC05G102280 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.2e-39
Identity = 107/168 (63.69%), Postives = 116/168 (69.05%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK--PQLRQPVIIYTHSPKIIHTHPKDFMALVQR 60
           MSP KSC+INGPRPSPLLIHK SRLIRK  PQLRQP+IIYTHSPKIIHT PKDFMALVQR
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRKPPPQLRQPLIIYTHSPKIIHTQPKDFMALVQR 60

Query: 61  LTGFTPPPPPSLPLSLSLPDRNFN---DNESSSSSEEENECGDQ-------KQSLVQRQT 120
           LTGFTPPPPP    S    DRN N   DN+SSS   EE  CGD        K+   Q Q+
Sbjct: 61  LTGFTPPPPPHADDS----DRNNNVNFDNDSSSVLTEEVNCGDHNHHPSYVKEVQSQSQS 120

Query: 121 N----------PSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKALPEF 147
           +          P+ LRY+ D T  F+SP L NSLSPSFMEFLK LPEF
Sbjct: 121 HSFLADVPLFTPAGLRYAPDAT-SFASPGLPNSLSPSFMEFLKGLPEF 163

[Close]

BLAST of CaUC05G102280 vs. ExPASy TrEMBL
Match: A0A6P6V8N0 (VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=LOC113717710 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.5e-19
Identity = 75/189 (39.68%), Postives = 99/189 (52.38%), Query Frame = 0


Query: 9   INGPRPSPLLIHKDSRLIRKP---------------------QLRQPVIIYTHSPKIIHT 68
           INGPRPSPL I+KDS +I+KP                     Q RQPVIIYTHSPKIIHT
Sbjct: 15  INGPRPSPLRINKDSHVIQKPSSMNQVYKKAATEQNTRLSTQQPRQPVIIYTHSPKIIHT 74

Query: 69  HPKDFMALVQRLTGFTPPPPPSLPLSLSLPDRNF----NDNESSSSSEEENECGDQKQSL 128
            PKDFMALVQ+LTGF+      +       D+       DN+SSS + ++   GD    +
Sbjct: 75  KPKDFMALVQKLTGFSRSEEQIVEAESKRDDQTITISQEDNDSSSVTSDDKYEGDNASDV 134

Query: 129 VQRQT------NPSLLRYSSDL---TP-----------------PFSSPALLNSLSPSFM 147
           ++  +      N  L  Y +D+   TP                  F+SP +++SLSPSF+
Sbjct: 135 IKESSSAVSPVNKGLNPYLTDIPLFTPNSNLFSSPQPVFRYPDVVFTSPNIVSSLSPSFV 194

[Close]

BLAST of CaUC05G102280 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 12  PRPSPLLIHKDSRLIRKP----------QLRQPVIIYTHSPKIIHTHPKDFMALVQRLTG 64
           P P  L ++KDS +I+KP          + R PVIIYTH+P+IIHT+PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CaUC05G102280 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-11
Identity = 57/158 (36.08%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 1   MSPPKSCEINGPRPSPLLIHKDSRLIRK---------PQLR-QPVIIYTHSPKIIHTHPK 60
           M P +  EING RPS L +  +S  I+K         P  R  PVIIY HSPK+IHT  +
Sbjct: 1   MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61  DFMALVQRLTGFTPPPPPSLPLSLSLPDRNFNDNESSSSSEEENECGDQ-----KQSLVQ 120
           DFMALVQRLTG              +  RN +++ SS  +EE N   D       Q   Q
Sbjct: 61  DFMALVQRLTGLD-----------EIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQ 120

Query: 121 RQTNPSLLRYSSDLTPPFSSPALLNSLSPSFMEFLKAL 144
           RQ    +  ++      F SP  L  +SP+  +  + L
Sbjct: 121 RQKLTDMPLFTPSSMTLFGSPTQLMYMSPNRTDSFRPL 147

[Close]

BLAST of CaUC05G102280 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 5  KSCEINGPRPSPLLIHKDSRLIRKPQL----------------RQPVIIYTHSPKIIHTH 64
          +  +I GPRPSPL +HKDS  I+KP                  R+PV+IY  SPK++H  
Sbjct: 20 RQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 79

[Close]

BLAST of CaUC05G102280 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 42/96 (43.75%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 4   PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYT 63
           P+S  I GPRP PL +  DS ++I+KP L                         PVIIYT
Sbjct: 6   PRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYT 65

Query: 64  HSPKIIHTHPKDFMALVQRLTGFTPPPPPSLPLSLS 76
            SP+IIHTHP +FM LVQRLTG T     S   S S
Sbjct: 66  VSPRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSS 101

[Close]

BLAST of CaUC05G102280 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 35/84 (41.67%), Postives = 45/84 (53.57%), Query Frame = 0


Query: 4  PKSCEINGPRPSPLLIHKDS-RLIRKPQLRQ-----------------------PVIIYT 63
          P+S    GP+P+PL +  DS ++I+KP L                         PV IYT
Sbjct: 6  PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

The following BLAST results are available for this feature:

BLAST of CaUC05G102280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893302.1	6.5e-59	82.69	VQ motif-containing protein 8, chloroplastic [Benincasa hispida]	[more]
XP_008466850.1	3.5e-44	68.49	PREDICTED: VQ motif-containing protein 8, chloroplastic-like [Cucumis melo] >KAA...	[more]
XP_022150646.1	1.3e-38	63.69	VQ motif-containing protein 8, chloroplastic [Momordica charantia]	[more]
KGN52621.2	1.2e-28	72.55	hypothetical protein Csa_008052 [Cucumis sativus]	[more]
KAG7013019.1	5.6e-26	52.67	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of CaUC05G102280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	2.4e-11	56.45	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	2.0e-10	36.08	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	2.9e-09	42.67	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	2.1e-07	41.67	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of CaUC05G102280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFH5	1.7e-44	68.49	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	1.7e-44	68.49	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KT78	3.5e-42	70.00	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A6J1DC48	6.2e-39	63.69	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6P6V8N0	5.5e-19	39.68	VQ motif-containing protein 8, chloroplastic-like OS=Coffea arabica OX=13443 GN=...	[more]

BLAST of CaUC05G102280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	1.7e-12	56.45	VQ motif-containing protein	[more]
AT1G68450.1	1.4e-11	36.08	VQ motif-containing protein	[more]
AT3G18690.1	2.1e-10	42.67	MAP kinase substrate 1	[more]
AT1G21326.1	1.0e-09	43.75	VQ motif-containing protein	[more]
AT1G21320.1	1.5e-08	41.67	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 39..66 e-value: 5.2E-12 score: 45.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..117
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 7..145
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 7..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G102280.1	CaUC05G102280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007276	gamete generation
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding