CaUC05G095110 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC05G095110
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Ribonuclease H
Location	Ciama_Chr05: 25726300 .. 25726653 (-)
RNA-Seq Expression	CaUC05G095110
Synteny	CaUC05G095110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTATAAAGTACATTTTGGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTACTATTGGAGTACGATATTGTCTATGTCACCAGAAAGGTCACAAAAGGGAGTGCAATCATCGATTGTCTAGCTGCATTACCTATTGAAGACTATGAGCTAATGAAATTTGAATTTCCAGATGAAGACATCATGACAATATCCACATTGAATGTGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGAAGCCATGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTAATTGCTAAGTTATACTTTGATTGA

mRNA sequence

ATGGATCCTATAAAGTACATTTTGGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTACTATTGGAGTACGATATTGTCTATGTCACCAGAAAGGTCACAAAAGGGAGTGCAATCATCGATTGTCTAGCTGCATTACCTATTGAAGACTATGAGCTAATGAAATTTGAATTTCCAGATGAAGACATCATGACAATATCCACATTGAATGTGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGAAGCCATGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTAATTGCTAAGTTATACTTTGATTGA

Coding sequence (CDS)

ATGGATCCTATAAAGTACATTTTGGAAAAGTCGTATTCGTCTAGTAGGATAGCCAAATGGCAAGTATTACTATTGGAGTACGATATTGTCTATGTCACCAGAAAGGTCACAAAAGGGAGTGCAATCATCGATTGTCTAGCTGCATTACCTATTGAAGACTATGAGCTAATGAAATTTGAATTTCCAGATGAAGACATCATGACAATATCCACATTGAATGTGGCACAGGATCCCGAAACATGGATAATGTTGTTTGATGAAGCCATGAACGAAGTGGGTCATGGTGTAGGGGCTATTTTTATATTTCCAGATGGGAAGTTGTATCCCCTAATTGCTAAGTTATACTTTGATTGA

Protein sequence

MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFEFPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD

Homology

[Close]

BLAST of CaUC05G095110 vs. NCBI nr
Match: XP_016899404.1 (PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo] >KAA0054926.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa] >TYK22715.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 5.4e-40
Identity = 86/117 (73.50%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EK   S RIAKWQVL  EYDI+YVTR V KGSAI DCLA LP+EDYELMKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+MT+S  +  QD E W M FD A NEVGHGVGAI  FPDGK YPL AKLYFD
Sbjct: 61  FLDEDVMTVS--DTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD 115

[Close]

BLAST of CaUC05G095110 vs. NCBI nr
Match: KAA0033845.1 (uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa] >TYK01227.1 uncharacterized protein E5676_scaffold49G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 5.1e-38
Identity = 82/117 (70.09%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EKS    RIAKWQVLLLEYDI+YVTRK  KGSAI+DCLA  P+EDYE MK E
Sbjct: 64  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIE 123

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           FPDED+M +S  +  QD E W M FD A NEVGHGVGAI    DGK YPL  KLYFD
Sbjct: 124 FPDEDVMIVS--DTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFD 178

[Close]

BLAST of CaUC05G095110 vs. NCBI nr
Match: XP_008447313.1 (PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 75/117 (64.10%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EK   S +IAKW VLLLE+DIVY+TRK  KGS I+DCL  LPIEDYE MKF+
Sbjct: 64  MDPIKYIFEKPSLSEKIAKWHVLLLEFDIVYITRKAIKGSVIVDCLVELPIEDYEPMKFD 123

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DEDIMTI  +N + D  TW M+FD A N+VGHG+G   + PD K YP   KLYFD
Sbjct: 124 FLDEDIMTI--VNTSSD--TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFD 176

[Close]

BLAST of CaUC05G095110 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 152.5 bits (384), Expect = 2.2e-33
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1    MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
            MDPIKYI EK   S RIA+WQVLL EYDIVYVTRK  KGSA+ D LA  PI DY  +KF+
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
            FPDE I TI+    + DP+TW M+FD A NE+GHG+G I I P G+LYPL A+L FD
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFD 1335

[Close]

BLAST of CaUC05G095110 vs. NCBI nr
Match: XP_022158764.1 (uncharacterized protein LOC111025231 [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 2.9e-33
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EK     RIA+WQVLL EYDIVYVTRK  KG A+ D LA  PI DY  +KF+
Sbjct: 288 MDPIKYIFEKPSLLGRIARWQVLLSEYDIVYVTRKAIKGGALADYLAQQPINDYIPVKFD 347

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           FPDE I TI+T   + DP+TW M+FD A NE+GHG+GAI I P G+LYPL A+L FD
Sbjct: 348 FPDEYISTITTSEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLCFD 404

[Close]

BLAST of CaUC05G095110 vs. ExPASy TrEMBL
Match: A0A5A7UKV4 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00350 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.6e-40
Identity = 86/117 (73.50%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EK   S RIAKWQVL  EYDI+YVTR V KGSAI DCLA LP+EDYELMKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+MT+S  +  QD E W M FD A NEVGHGVGAI  FPDGK YPL AKLYFD
Sbjct: 61  FLDEDVMTVS--DTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD 115

[Close]

BLAST of CaUC05G095110 vs. ExPASy TrEMBL
Match: A0A1S4DTT9 (uncharacterized protein LOC107990505 OS=Cucumis melo OX=3656 GN=LOC107990505 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.6e-40
Identity = 86/117 (73.50%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EK   S RIAKWQVL  EYDI+YVTR V KGSAI DCLA LP+EDYELMKFE
Sbjct: 1   MDPIKYIFEKPSLSGRIAKWQVLPSEYDIIYVTRNVVKGSAITDCLADLPVEDYELMKFE 60

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DED+MT+S  +  QD E W M FD A NEVGHGVGAI  FPDGK YPL AKLYFD
Sbjct: 61  FLDEDVMTVS--DTPQDTEIWTMFFDGATNEVGHGVGAILTFPDGKSYPLTAKLYFD 115

[Close]

BLAST of CaUC05G095110 vs. ExPASy TrEMBL
Match: A0A5D3BPI8 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00050 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 82/117 (70.09%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EKS    RIAKWQVLLLEYDI+YVTRK  KGSAI+DCLA  P+EDYE MK E
Sbjct: 64  MDPIKYIFEKSSLFGRIAKWQVLLLEYDIIYVTRKAMKGSAIVDCLANFPVEDYEPMKIE 123

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           FPDED+M +S  +  QD E W M FD A NEVGHGVGAI    DGK YPL  KLYFD
Sbjct: 124 FPDEDVMIVS--DTLQDTEIWTMFFDGATNEVGHGVGAILTSSDGKSYPLTTKLYFD 178

[Close]

BLAST of CaUC05G095110 vs. ExPASy TrEMBL
Match: A0A1S3BH42 (uncharacterized protein LOC103489784 OS=Cucumis melo OX=3656 GN=LOC103489784 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.3e-34
Identity = 75/117 (64.10%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
           MDPIKYI EK   S +IAKW VLLLE+DIVY+TRK  KGS I+DCL  LPIEDYE MKF+
Sbjct: 64  MDPIKYIFEKPSLSEKIAKWHVLLLEFDIVYITRKAIKGSVIVDCLVELPIEDYEPMKFD 123

Query: 61  FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
           F DEDIMTI  +N + D  TW M+FD A N+VGHG+G   + PD K YP   KLYFD
Sbjct: 124 FLDEDIMTI--VNTSSD--TWTMMFDRATNKVGHGMGVTLMSPDEKRYPFTTKLYFD 176

[Close]

BLAST of CaUC05G095110 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1    MDPIKYILEKSYSSSRIAKWQVLLLEYDIVYVTRKVTKGSAIIDCLAALPIEDYELMKFE 60
            MDPIKYI EK   S RIA+WQVLL EYDIVYVTRK  KGSA+ D LA  PI DY  +KF+
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FPDEDIMTISTLNVAQDPETWIMLFDEAMNEVGHGVGAIFIFPDGKLYPLIAKLYFD 118
            FPDE I TI+    + DP+TW M+FD A NE+GHG+G I I P G+LYPL A+L FD
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFD 1335

The following BLAST results are available for this feature:

BLAST of CaUC05G095110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899404.1	5.4e-40	73.50	PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo] >KAA0054926.1 Ret...	[more]
KAA0033845.1	5.1e-38	70.09	uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa] >TY...	[more]
XP_008447313.1	1.3e-33	64.10	PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]	[more]
XP_022158986.1	2.2e-33	63.25	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022158764.1	2.9e-33	63.25	uncharacterized protein LOC111025231 [Momordica charantia]	[more]

BLAST of CaUC05G095110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC05G095110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKV4	2.6e-40	73.50	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]
A0A1S4DTT9	2.6e-40	73.50	uncharacterized protein LOC107990505 OS=Cucumis melo OX=3656 GN=LOC107990505 PE=...	[more]
A0A5D3BPI8	2.5e-38	70.09	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BH42	6.3e-34	64.10	uncharacterized protein LOC103489784 OS=Cucumis melo OX=3656 GN=LOC103489784 PE=...	[more]
A0A6J1E2J7	1.1e-33	63.25	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]

BLAST of CaUC05G095110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 2..113
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC05G095110.1	CaUC05G095110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding