Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCATTTCGGCCTCACTGATGATCCATATTTGAATTACACTGGGTTGCTCTTTGCGAGCCCCATGGATTGGTGTTGTCGTTGTCTAGTGATAACGCTGATGGTACAATATTCTCATACATTGGAGTATCATCTTCTTGTGGATCAATCTCAAATGATTTATCATATTGTTTGTTTATAGTCATACGTTACATTGTTGAACTCCGTATTCATATTTTCTTTGTGCTTCGATTTTAGCATTACAAATAATTAAACTCTACAAAGATCATCCCGGATAAGAAGAAAATGAATATCACCATATTTCCTCATGTATTTTGGTGGGGCTTCATAGTCCAATTTGTATTTAACTCTCATTATGACGTCAAAATCTAAAAACTGACATTTATAACCCTGTATATGTGAACCTTAAGTTCTTCGTACTTCAATGTAATAGGCACAATAATTTTTGTCTACTCGCCTCCAATATATGAACTTCGATTCTCATCCCAAGTTACCTCCATAATCGAATGAGTAGGCATTTATATGTCATCCTTCAAGCAAGAGAACATTAGTTAATAAGTTGTACAATCTTGCTTGCTCTCATTCTGTTTGCTCTCAATCTCGCTCTCGGGACTGACTTACACTCTCTCTTGCGATCTCTCTCTCACTCTCGCACTCATTGTTCGCCTTCTTGCACACTTTCTTTTGTTGTTTAGAATGTAATAAGTATTTATAATGTTCTTTGCGTTTGAAAAAACACTGTTCAAGGAAACCCCATCCAAGAAAGGACCGTGGAAGAAAGAAAACAACGTTCAAATGAACGACATTTAGGGTTTGAGGAAATTTTTTTTTTAAAAATGTATGTATTGGGTATTGTTGATTTGAGGGTTGATAGATGATTTTGTGAAATTGTCAAATCGATCATATGTACACTGACAGGACACATCCAAAGTGAGAGCGAGAGAGTAAGGGTCAACAAAAGGTCATTTGACATTATTTAAAAAAATGGTCAATTGGCATTTTGGGTCCACGGGACAAATTTCCCTTGAGCTATTGGATTAGCTTCTAGTGGAATATGAATTCTGATCAATTGGTCACATGTGTTTTAATCTAGAGATATGAATTGCTATAGAGAATCTAAGTTTGCATTTGATGCATTTGGGAATTTGTCTGGAAGGATTTTTTCCAAAAATTTAGGGTCAGTTCAAATTGAGTTGAGAAAAAGACATTTTTCAAAAAACTCATTTTTGCTGTAGTTGCCAAACAATTCAATTTTTTTAAAATATAATTTATTTTTTAAATTAAACCATTGAAAATATGTATTATAAACCTACCCTTAATTGATGAAGAATTTCCGACAGTGGGTATTCATTTACGCCTGGGCAAACGTCTAATTCTCATGGGTTCCAATTGTACAAAAATTTGGAAGGCAAGTTGGGGAAAATAGGAGGCGATGCAATCCCTTCTTCGGAGATTCGAAGAGATTTTACTATGTCGATCACTACCGCGTCCAACATTTTAAGCCAAGAGGACCTCGGCGATGGTCAAGAACCGTATTGATTGTTGTTTTTGTGGGTTCTGGAGTTTTTATCACCCTGTATTATTTGAATTTAGAAACCATACCTTACACAAAACGAAGGAATTTTGTGCTATGAATAATTGATACGAGTATTTTGGTGGTATCTTGATGTGTTGTGAGTTTGAATTTCAATTGTTTTCTCTTGTTCTTCCGTCGTATTGAGTCATTGACTAACATATTCTATTGACATCGATATAAATATTTTTGTTCTTGAACTTGCTAGCTTTCACTTAGCTCAACCTCTAAAGTCATGTGTGTCATTATCTTTGGAAGTCCTGGGTAGATCATATCATGTTTTAAGGTCTTGTTTTCGTTAATTAGGTTGGGCATGCTGTGGCTCAACATGCTGCAGAGAATATTACAAAGTACCTGGGGTATGCCGTTTTGCCACTTATCCTTTGTCAGTTCCTCATGCCTGATATTGTCAACACTACGTCTACTCTTTTCTTGAATCTCCCTTTCTCTTGAACTTCAAACTTCTTTTATTTATATCTTTCTTTTGCTATATTGATTTCTAGTATGTCTGGGAGTGATTCTTAAATTGTCAAAACCAACCGTAATATGCTTTTAGTAATTCTAAATCAATTTTACTAGTATAAAAAAAATAAGCATTTAAAAGTGTAAAACTTTAACTATTGTATTGAATTGATTTTGAGTGATTAAACTTATAAAAATAATTTTCACCATTTCAAAATGTTTCAAACATGCACTTAGATTTCAATAGATGTGTATGTGTATGTAAACATGTTATTTTGTCAAAGTCATGCTATCTCTTACTTGTTCTATGAATTTCTGAGTTCGTAATCTGATATTTTTCGAAAATTTTTATACCTTCAGGAAGGAAATGGAAGTAGATTACACCGGTTTGCTTTTGATTGCGTCTGCTGGATACGACCCTAGGAATGCACCGACAGTATGCGAGAGGTTGGGTAAGATCTCCGGTGAGTCTCACCTGAGTGATTATCTTTGTACTCATCCATCTGGAAAGAAGTGA
mRNA sequence
ATGAATCATTTCGGCCTCACTGATGATCCATATTTGAATTACACTGGGTTGCTCTTTGCGAGCCCCATGGATTGGTGTTGTCGTTGTCTAGTGATAACGCTGATGGTTGGGCATGCTGTGGCTCAACATGCTGCAGAGAATATTACAAAGTACCTGGGGAAGGAAATGGAAGTAGATTACACCGGTTTGCTTTTGATTGCGTCTGCTGGATACGACCCTAGGAATGCACCGACAGTATGCGAGAGGTTGGGTAAGATCTCCGGTGAGTCTCACCTGAGTGATTATCTTTGTACTCATCCATCTGGAAAGAAGTGA
Coding sequence (CDS)
ATGAATCATTTCGGCCTCACTGATGATCCATATTTGAATTACACTGGGTTGCTCTTTGCGAGCCCCATGGATTGGTGTTGTCGTTGTCTAGTGATAACGCTGATGGTTGGGCATGCTGTGGCTCAACATGCTGCAGAGAATATTACAAAGTACCTGGGGAAGGAAATGGAAGTAGATTACACCGGTTTGCTTTTGATTGCGTCTGCTGGATACGACCCTAGGAATGCACCGACAGTATGCGAGAGGTTGGGTAAGATCTCCGGTGAGTCTCACCTGAGTGATTATCTTTGTACTCATCCATCTGGAAAGAAGTGA
Protein sequence
MNHFGLTDDPYLNYTGLLFASPMDWCCRCLVITLMVGHAVAQHAAENITKYLGKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKISGESHLSDYLCTHPSGKK
Homology
BLAST of CaUC05G088010 vs. NCBI nr
Match:
KAG5533728.1 (hypothetical protein RHGRI_027796 [Rhododendron griersonianum])
HSP 1 Score: 100.9 bits (250), Expect = 6.8e-18
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 0
Query: 36 VGHAVAQHAAENITKYLGKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKISGESHLSDY 95
VGH VA+HAAE ITK L EME DY G+LL+ASAGYDPR AP V E+LG+++G+S L DY
Sbjct: 781 VGHVVARHAAEQITKNLWMEMEADYIGVLLMASAGYDPRVAPKVYEKLGQLTGDSPLRDY 840
Query: 96 LCTHPSGKK 105
THPSGKK
Sbjct: 841 FSTHPSGKK 849
BLAST of CaUC05G088010 vs. NCBI nr
Match:
XP_022922484.1 (uncharacterized protein LOC111430479 isoform X1 [Cucurbita moschata] >XP_022922486.1 uncharacterized protein LOC111430479 isoform X1 [Cucurbita moschata])
HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 64/138 (46.38%), Postives = 73/138 (52.90%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYL------ 60
+N F L + +TGLL F S + +I +GHAVA+HAAE ITK L
Sbjct: 282 VNAFCLPGGKIVVFTGLLEHFRSDAE---IATIIGHEIGHAVARHAAEGITKNLWFAVLQ 341
Query: 61 --------------------------GKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
EME DY GLLLIASAGYDPR APTV ERLGK+
Sbjct: 342 LILYQFVMPDIVNTMSTLFLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPTVYERLGKV 401
BLAST of CaUC05G088010 vs. NCBI nr
Match:
KAG6576765.1 (Embryo-specific protein ATS3B, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 64/138 (46.38%), Postives = 73/138 (52.90%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYL------ 60
+N F L + +TGLL F S + +I +GHAVA+HAAE ITK L
Sbjct: 426 VNAFCLPGGKIVVFTGLLEHFRSDAE---IATIIGHEIGHAVARHAAEGITKNLWFAVLQ 485
Query: 61 --------------------------GKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
EME DY GLLLIASAGYDPR APTV ERLGK+
Sbjct: 486 LILYQFVTPDIVNTMSTLFLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPTVYERLGKV 545
BLAST of CaUC05G088010 vs. NCBI nr
Match:
XP_022922487.1 (uncharacterized protein LOC111430479 isoform X2 [Cucurbita moschata])
HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 64/138 (46.38%), Postives = 73/138 (52.90%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYL------ 60
+N F L + +TGLL F S + +I +GHAVA+HAAE ITK L
Sbjct: 282 VNAFCLPGGKIVVFTGLLEHFRSDAE---IATIIGHEIGHAVARHAAEGITKNLWFAVLQ 341
Query: 61 --------------------------GKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
EME DY GLLLIASAGYDPR APTV ERLGK+
Sbjct: 342 LILYQFVMPDIVNTMSTLFLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPTVYERLGKV 401
BLAST of CaUC05G088010 vs. NCBI nr
Match:
KAG7014804.1 (Embryo-specific protein ATS3B [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 64/138 (46.38%), Postives = 73/138 (52.90%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYL------ 60
+N F L + +TGLL F S + +I +GHAVA+HAAE ITK L
Sbjct: 463 VNAFCLPGGKIVVFTGLLEHFRSDAE---IATIIGHEIGHAVARHAAEGITKNLWFAVLQ 522
Query: 61 --------------------------GKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
EME DY GLLLIASAGYDPR APTV ERLGK+
Sbjct: 523 LILYQFVTPDIVNTMSTLFLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPTVYERLGKV 582
BLAST of CaUC05G088010 vs. ExPASy TrEMBL
Match:
A0A6J1E3I5 (uncharacterized protein LOC111430479 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430479 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 64/138 (46.38%), Postives = 73/138 (52.90%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYL------ 60
+N F L + +TGLL F S + +I +GHAVA+HAAE ITK L
Sbjct: 282 VNAFCLPGGKIVVFTGLLEHFRSDAE---IATIIGHEIGHAVARHAAEGITKNLWFAVLQ 341
Query: 61 --------------------------GKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
EME DY GLLLIASAGYDPR APTV ERLGK+
Sbjct: 342 LILYQFVMPDIVNTMSTLFLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPTVYERLGKV 401
BLAST of CaUC05G088010 vs. ExPASy TrEMBL
Match:
A0A6J1CHM3 (uncharacterized protein LOC111011501 OS=Momordica charantia OX=3673 GN=LOC111011501 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 64/138 (46.38%), Postives = 73/138 (52.90%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYLG----- 60
+N F L + +TGLL F S + +I VGHAVA+HAAE ITK LG
Sbjct: 282 VNAFCLPGGKIVVFTGLLEHFRSDAE---IATIIGHEVGHAVARHAAEGITKNLGFAILQ 341
Query: 61 ---------------------------KEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
EME DY GLLLIASAGYDPR APTV E LGK+
Sbjct: 342 IILYQFVMPDIVNTMSALFLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPTVYEMLGKV 401
BLAST of CaUC05G088010 vs. ExPASy TrEMBL
Match:
A0A6J1E3E3 (uncharacterized protein LOC111430479 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430479 PE=3 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 64/138 (46.38%), Postives = 73/138 (52.90%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYL------ 60
+N F L + +TGLL F S + +I +GHAVA+HAAE ITK L
Sbjct: 282 VNAFCLPGGKIVVFTGLLEHFRSDAE---IATIIGHEIGHAVARHAAEGITKNLWFAVLQ 341
Query: 61 --------------------------GKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
EME DY GLLLIASAGYDPR APTV ERLGK+
Sbjct: 342 LILYQFVMPDIVNTMSTLFLRLPFSRRMEMEADYIGLLLIASAGYDPRVAPTVYERLGKV 401
BLAST of CaUC05G088010 vs. ExPASy TrEMBL
Match:
A0A6J1HYD1 (uncharacterized protein LOC111467384 OS=Cucurbita maxima OX=3661 GN=LOC111467384 PE=3 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 62/136 (45.59%), Postives = 70/136 (51.47%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLLFASPMDWCCRCLVITLMVGHAVAQHAAENITKYLG------- 60
+N F L + +TGLL D +I VGHAVA+H+AE ITK LG
Sbjct: 272 VNAFCLPGGKIVVFTGLLEHFRKD-AEIATIIGHEVGHAVARHSAEGITKNLGFAVLQLI 331
Query: 61 -------------------------KEMEVDYTGLLLIASAGYDPRNAPTVCERLGKISG 105
EME DY GLLLIASAGYDPR AP V E LGK++G
Sbjct: 332 LYQFIMPDIVNTMSTLFLRLPFSRKMEMEADYIGLLLIASAGYDPRVAPAVYETLGKVTG 391
BLAST of CaUC05G088010 vs. ExPASy TrEMBL
Match:
A0A6J1G2G4 (uncharacterized protein LOC111450044 OS=Cucurbita moschata OX=3662 GN=LOC111450044 PE=3 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 62/136 (45.59%), Postives = 70/136 (51.47%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLLFASPMDWCCRCLVITLMVGHAVAQHAAENITKYLG------- 60
+N F L + +TGLL D +I VGHAVA+H+AE ITK LG
Sbjct: 272 VNAFCLPGGKIVVFTGLLEHFRKD-AEIATIIGHEVGHAVARHSAEGITKNLGFAVLQLI 331
Query: 61 -------------------------KEMEVDYTGLLLIASAGYDPRNAPTVCERLGKISG 105
EME DY GLLLIASAGYDPR AP V E LGK++G
Sbjct: 332 LYQFIMPDIVNTMSTLFLRLPFSRKMEMEADYIGLLLIASAGYDPRVAPAVYETLGKVTG 391
BLAST of CaUC05G088010 vs. TAIR 10
Match:
AT5G51740.1 (Peptidase family M48 family protein )
HSP 1 Score: 87.4 bits (215), Expect = 7.2e-18
Identity = 60/138 (43.48%), Postives = 71/138 (51.45%), Query Frame = 0
Query: 1 MNHFGLTDDPYLNYTGLL--FASPMDWCCRCLVITLMVGHAVAQHAAENITKYL------ 60
+N F L + +TGLL F S + VI VGHAVA+H AE ITK L
Sbjct: 277 VNAFCLPAGKIVVFTGLLNHFKSDAE---VATVIGHEVGHAVARHVAEGITKNLWFAILQ 336
Query: 61 --------------------------GKEMEVDYTGLLLIASAGYDPRNAPTVCERLGKI 105
E+E DY GLLL+ASAGYDPR APTV E+LGK+
Sbjct: 337 LVLYQFVMPDLVNTMSALFLRLPFSRKMEIEADYIGLLLLASAGYDPRVAPTVYEKLGKL 396
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG5533728.1 | 6.8e-18 | 68.12 | hypothetical protein RHGRI_027796 [Rhododendron griersonianum] | [more] |
XP_022922484.1 | 3.4e-17 | 46.38 | uncharacterized protein LOC111430479 isoform X1 [Cucurbita moschata] >XP_0229224... | [more] |
KAG6576765.1 | 3.4e-17 | 46.38 | Embryo-specific protein ATS3B, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022922487.1 | 3.4e-17 | 46.38 | uncharacterized protein LOC111430479 isoform X2 [Cucurbita moschata] | [more] |
KAG7014804.1 | 3.4e-17 | 46.38 | Embryo-specific protein ATS3B [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E3I5 | 1.6e-17 | 46.38 | uncharacterized protein LOC111430479 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1CHM3 | 1.6e-17 | 46.38 | uncharacterized protein LOC111011501 OS=Momordica charantia OX=3673 GN=LOC111011... | [more] |
A0A6J1E3E3 | 1.6e-17 | 46.38 | uncharacterized protein LOC111430479 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1HYD1 | 1.4e-16 | 45.59 | uncharacterized protein LOC111467384 OS=Cucurbita maxima OX=3661 GN=LOC111467384... | [more] |
A0A6J1G2G4 | 1.4e-16 | 45.59 | uncharacterized protein LOC111450044 OS=Cucurbita moschata OX=3662 GN=LOC1114500... | [more] |
Match Name | E-value | Identity | Description | |
AT5G51740.1 | 7.2e-18 | 43.48 | Peptidase family M48 family protein | [more] |