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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCAAGACCTGACGGTTTTACCATGGAATTTTTCAAAAATTAGTATTGGAATATTTTCCGCCCCGACCTTATGAACATGTTCCATGACTTTTTCCAAAATAATATTGTGAACAGAGCAATGAATGCTACTTTCATAGCATTGATTCCTAAAAAGTTTCCCCCCCCAAAGAGTCAATGACTTCTGCCCCATAAGTCTCACCACGAGTATATACAAATTACTGGCTAAAGTACTTGCAGAGTGCCTCAAAAGAGTTCTCCCCTACACAATATCTCAACACCAATCTGCCTTTGTTAATGAAAGGCAAATCACTGATCCCATCCTTATCGTAAACGAGATTGTGGACTATTAGGGTGTCAGCAAATCAAAAGGTTTCATCAGTAAGCTTGACATAGAAAAGGCTTTCGATAAAATCAGATGGAATTTTATCCTATCGGTGATGAAACTTAAAGGCTTCAGCAAATGGATAAATTGGATAAACGCTTGCTTATCAACGGTAAACTATTCTATCCTACTAAATGGGATACCCAGGGGTTTTATACAAGCCACGAGATGAATTAGACAAGGAGATCCACTCTCACCGTTCTTGTTTGTACTTGCTATGGACTACCTATCCAGCCTGATTGAAGAAGCTCAAAGAAAGAATCTTATTAGAGGTTTTGAAATCAACCAAAGAAATCAGTACATCTCCCATCTATTATTTGCCGATGATATTCTCCTTTTCTTAAAGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAGGTTAATCTTCATAAATCTTGTATAGCTGGGGTCAATGTTGACGATGATCTTATGCAACAAGCAGAAGACATATAG mRNA sequence ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCAAGACCTGACGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAGGTTAATCTTCATAAATCTTGTATAGCTGGGGTCAATGTTGACGATGATCTTATGCAACAAGCAGAAGACATATAG Coding sequence (CDS) ATGGATCAGGATATTGAAAAAGCCTTCATCGATTATTTCCTAGATATCTACACCAAGAGGGAAGATAGTCCTTGGATGATTGGCAATCTAAACTGGAGGGTAATTGATAACGATCTTGCAGCCTCCCTTACTACCCCCTTCACGGATGCCGAAGTCGTAACTGCTTATAGGCTTTGGGTCACAATAAAACTCCAAGACCTGACGGCTAGTGTCGAACATCTCAAGAATCTCAACTTCATTGTCAAGTCTTTTGAACAAGCCTCGGGCCTAAAGGTTAATCTTCATAAATCTTGTATAGCTGGGGTCAATGTTGACGATGATCTTATGCAACAAGCAGAAGACATATAG Protein sequence MDQDIEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKLQDLTASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQAEDI
Homology
BLAST of CaUC05G087680 vs. NCBI nr
Match: TYK02928.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04 Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 5 IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKL 64 IEKAF+D+F +IY + W+I NL+W +I N L PFT++E+ A++ + K Sbjct: 184 IEKAFLDHFEEIYRNNCEDLWLIDNLHWSIISNKEREDLCKPFTESEIQVAFKDFTNNKF 243
Query: 65 QDL 68 L Sbjct: 244 SGL 246
BLAST of CaUC05G087680 vs. NCBI nr
Match: MCH79402.1 (LINE-1 reverse transcriptase like [Trifolium medium]) HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04 Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 Query: 69 ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQA 113 ASVE+L L I++ FE ASGLKVN KSC+ G+NV DD M+ A Sbjct: 287 ASVENLWTLKAILRGFELASGLKVNFWKSCLMGINVSDDFMEMA 330
BLAST of CaUC05G087680 vs. ExPASy TrEMBL
Match: A0A392LWR3 (LINE-1 reverse transcriptase like OS=Trifolium medium OX=97028 GN=A2U01_0000151 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04 Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 Query: 69 ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQA 113 ASVE+L L I++ FE ASGLKVN KSC+ G+NV DD M+ A Sbjct: 287 ASVENLWTLKAILRGFELASGLKVNFWKSCLMGINVSDDFMEMA 330
BLAST of CaUC05G087680 vs. ExPASy TrEMBL
Match: A0A5D3BVB5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00080 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04 Identity = 24/63 (38.10%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 5 IEKAFIDYFLDIYTKREDSPWMIGNLNWRVIDNDLAASLTTPFTDAEVVTAYRLWVTIKL 64 IEKAF+D+F +IY + W+I NL+W +I N L PFT++E+ A++ + K Sbjct: 184 IEKAFLDHFEEIYRNNCEDLWLIDNLHWSIISNKEREDLCKPFTESEIQVAFKDFTNNKF 243
Query: 65 QDL 68 L Sbjct: 244 SGL 246
BLAST of CaUC05G087680 vs. ExPASy TrEMBL
Match: A0A2Z6PCJ8 (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_324640 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 6.7e-04 Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0 Query: 69 ASVEHLKNLNFIVKSFEQASGLKVNLHKSCIAGVNVDDDLMQQAED 115 A+VE+L L I++ FE ASGLKVN KSC+ G+NV+DD + A D Sbjct: 77 ATVENLWTLKAILRGFEMASGLKVNFWKSCLIGINVNDDFLGMATD 122
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK02928.1 | 8.1e-04 | 38.10 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
MCH79402.1 | 8.1e-04 | 59.09 | LINE-1 reverse transcriptase like [Trifolium medium] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A392LWR3 | 3.9e-04 | 59.09 | LINE-1 reverse transcriptase like OS=Trifolium medium OX=97028 GN=A2U01_0000151 ... | [more] |
A0A5D3BVB5 | 3.9e-04 | 38.10 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A2Z6PCJ8 | 6.7e-04 | 54.35 | Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=390... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016020 |
membrane |
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