CaUC02G036220 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G036220
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description3-hydroxy-3-methylglutaryl coenzyme A reductase
LocationCiama_Chr02: 19356580 .. 19358553 (-)
RNA-Seq ExpressionCaUC02G036220
SyntenyCaUC02G036220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCCGCCGCCGCCGGTCCTCTTCCCTCTTCAAGAAACTAACCGCCGACGAACCACCGGTGGAATCCATGGATAAAAATCCTCTCAAGGTTAAGATGGCGGAACGACAACAACATGTTCATGATGATGCCGTTAAGGCGTCTGATGTTTTGCCTCTTCCCATTTACCTCACCAATGCCGCTTTCTTCACTCTCTTCTTCTCTGTTGTTTACTTTCTTCTTACGCGTTGGCGTGAGAAGATTCGTTCATCCACTCCTCTCCATGTCGTTACGCTTTCCGAAATGGTCGCCATTTCTGCGTTTATCGCTTCCTTCATTTACCTTCTCGGATTCTTCGGAATCGACTTTGTTCAATCAATTTTCCGTCCTTCGCATGATGTATGGACCTCTGAGGATGATGAGGTCGTTCTGATTAAGGAGGATACTCGGAAGGTTCCATGTGGCGCTGGAATCGATTGTTCGATTCCGGTTTTGGCACCTCCTATGCCCTCGGTGCCAAAACTCGTTGATCCGATGCCTGTTAGCATCGATTTGACGGAGGAGGATGAAGAGATCGTTAAATCTGTTGTGGCTGGAACTACGCCGTCGTATTCGCTCGAATCGAAGCTCGGCGATTGTGGACGAGCGGCCGCTATCCGGCGCGAGGCCTTGCAGAGAGTTACCGGTAAATCGCTCTCGGGGCTTCCGTTGGAAGGATTCGATTACGCTTCGATATTAGGGCAGTGCTGCGAGATGCCTATTGGATATGTACAGATTCCAGTGGGAATCGCTGGGCCATTGTTGTTAGACGGGAAGGAGTATTCCGTACCAATGGCTACCACCGAAGGTTGCCTGGTTGCTAGTACAAATAGAGGTTGTAAAGCGATTATGATGTCCGGTGGAGCTAACAGCGTGTTGTTGAGAGATGCAATGACGAGAGCACCAGTTATGAGATTCGCAACGGCAAAAAGAGCAGCGGAATTGAAGATGTACGTTGAGGATCCGGCGAATTTCGATACCTTAGCCTCTGTTTTCAACAAGTCAAGTAGATTCGGAAGGCTACAAAGTATCAAATGCGCCATTGCTGGTAAGAATCTCTATATGAGATTCTCTTGCAGTACTGGTGATGCTATGGGGATGAATATGGTTTCCAAAGGCGTTCAAAACGTTTTGGATTTTCTCCAGAATGATTTCCCTGACATGGATGTAATTGGCATATCTGGTAACAAATCAAAATTCCTTCCACATACAACCTTCCAATTTTCTCTGATTTACTTCTTTTTAAAGTGTATTCGTTTGTGAATCAGGAAACTACTGTTCAGACAAGAAGCCTGCTGCTGTGAACTGGATCGAAGGGCGGGGTAAATCAGTGGTTTGTGAGGTTACAATCAAGGGTGATGTAGTGAAGAAGGTCCTCAAAACCGACGTTCAAGCCTTAGTTGAGCTTAACATGCTCAAGAATCTCACTGGTTCTGCCATGGCTGGAGCTCTTGGAGGGTTCAACGCCCATGCCAGTAACATAGTTTCGGCTATCTATATCGCAACAGGGCAAGATCCTGCACAGAACGTGGAGAGTTCTCACTGTATTACAATGATGGAAGCTGTGAATGATGGCCAAGATCTTCACGTCTCTGTTACCATGCCTTCCATCGAGGTCAATTCATAATAATCTTGTTTCTATGATGAACTAACTTATTGTTGAAATTTCCGAGTCTAACAGTTGGTTTAATTGATTGTTAAATGCAGGTGGGTACAGTTGGTGGAGGGACCCAGCTTGCTTCTCAATCTGCTTGTTTGAACTTACTTGGAGTTAAAGGGGCCAACAGAGAAGCTCCAGGATCTAACTCAAGGCTGTTAGCCACCATTGTAGCTGGCTCAGTTCTTGCAGGAGAGCTTTCTCTTATGTCTGCAATTTCAGCAGGACATCTTGTGAGGAGTCATATGAAGTACAATAGATCCAGTAGAGATGTCACTAAAGCTTCTTCCTCTTAA

mRNA sequence

ATGGACGCCCGCCGCCGCCGGTCCTCTTCCCTCTTCAAGAAACTAACCGCCGACGAACCACCGGTGGAATCCATGGATAAAAATCCTCTCAAGGTTAAGATGGCGGAACGACAACAACATGTTCATGATGATGCCGTTAAGGCGTCTGATGTTTTGCCTCTTCCCATTTACCTCACCAATGCCGCTTTCTTCACTCTCTTCTTCTCTGTTGTTTACTTTCTTCTTACGCGTTGGCGTGAGAAGATTCGTTCATCCACTCCTCTCCATGTCGTTACGCTTTCCGAAATGGTCGCCATTTCTGCGTTTATCGCTTCCTTCATTTACCTTCTCGGATTCTTCGGAATCGACTTTGTTCAATCAATTTTCCGTCCTTCGCATGATGTATGGACCTCTGAGGATGATGAGGTCGTTCTGATTAAGGAGGATACTCGGAAGGTTCCATGTGGCGCTGGAATCGATTGTTCGATTCCGGTTTTGGCACCTCCTATGCCCTCGGTGCCAAAACTCGTTGATCCGATGCCTGTTAGCATCGATTTGACGGAGGAGGATGAAGAGATCGTTAAATCTGTTGTGGCTGGAACTACGCCGTCGTATTCGCTCGAATCGAAGCTCGGCGATTGTGGACGAGCGGCCGCTATCCGGCGCGAGGCCTTGCAGAGAGTTACCGGTAAATCGCTCTCGGGGCTTCCGTTGGAAGGATTCGATTACGCTTCGATATTAGGGCAGTGCTGCGAGATGCCTATTGGATATGTACAGATTCCAGTGGGAATCGCTGGGCCATTGTTGTTAGACGGGAAGGAGTATTCCGTACCAATGGCTACCACCGAAGGTTGCCTGGTTGCTAGTACAAATAGAGGTTGTAAAGCGATTATGATGTCCGGTGGAGCTAACAGCGTGTTGTTGAGAGATGCAATGACGAGAGCACCAGTTATGAGATTCGCAACGGCAAAAAGAGCAGCGGAATTGAAGATGTACGTTGAGGATCCGGCGAATTTCGATACCTTAGCCTCTGTTTTCAACAAGTCAAGTAGATTCGGAAGGCTACAAAGTATCAAATGCGCCATTGCTGGTAAGAATCTCTATATGAGATTCTCTTGCAGTACTGGTGATGCTATGGGGATGAATATGGTTTCCAAAGGCGTTCAAAACGTTTTGGATTTTCTCCAGAATGATTTCCCTGACATGGATGTAATTGGCATATCTGGAAACTACTGTTCAGACAAGAAGCCTGCTGCTGTGAACTGGATCGAAGGGCGGGGTAAATCAGTGGTTTGTGAGGTTACAATCAAGGGTGATGTAGTGAAGAAGGTCCTCAAAACCGACGTTCAAGCCTTAGTTGAGCTTAACATGCTCAAGAATCTCACTGGTTCTGCCATGGCTGGAGCTCTTGGAGGGTTCAACGCCCATGCCAGTAACATAGTTTCGGCTATCTATATCGCAACAGGGCAAGATCCTGCACAGAACGTGGAGAGTTCTCACTGTATTACAATGATGGAAGCTGTGAATGATGGCCAAGATCTTCACGTCTCTGTTACCATGCCTTCCATCGAGGTGGGTACAGTTGGTGGAGGGACCCAGCTTGCTTCTCAATCTGCTTGTTTGAACTTACTTGGAGTTAAAGGGGCCAACAGAGAAGCTCCAGGATCTAACTCAAGGCTGTTAGCCACCATTGTAGCTGGCTCAGTTCTTGCAGGAGAGCTTTCTCTTATGTCTGCAATTTCAGCAGGACATCTTGTGAGGAGTCATATGAAGTACAATAGATCCAGTAGAGATGTCACTAAAGCTTCTTCCTCTTAA

Coding sequence (CDS)

ATGGACGCCCGCCGCCGCCGGTCCTCTTCCCTCTTCAAGAAACTAACCGCCGACGAACCACCGGTGGAATCCATGGATAAAAATCCTCTCAAGGTTAAGATGGCGGAACGACAACAACATGTTCATGATGATGCCGTTAAGGCGTCTGATGTTTTGCCTCTTCCCATTTACCTCACCAATGCCGCTTTCTTCACTCTCTTCTTCTCTGTTGTTTACTTTCTTCTTACGCGTTGGCGTGAGAAGATTCGTTCATCCACTCCTCTCCATGTCGTTACGCTTTCCGAAATGGTCGCCATTTCTGCGTTTATCGCTTCCTTCATTTACCTTCTCGGATTCTTCGGAATCGACTTTGTTCAATCAATTTTCCGTCCTTCGCATGATGTATGGACCTCTGAGGATGATGAGGTCGTTCTGATTAAGGAGGATACTCGGAAGGTTCCATGTGGCGCTGGAATCGATTGTTCGATTCCGGTTTTGGCACCTCCTATGCCCTCGGTGCCAAAACTCGTTGATCCGATGCCTGTTAGCATCGATTTGACGGAGGAGGATGAAGAGATCGTTAAATCTGTTGTGGCTGGAACTACGCCGTCGTATTCGCTCGAATCGAAGCTCGGCGATTGTGGACGAGCGGCCGCTATCCGGCGCGAGGCCTTGCAGAGAGTTACCGGTAAATCGCTCTCGGGGCTTCCGTTGGAAGGATTCGATTACGCTTCGATATTAGGGCAGTGCTGCGAGATGCCTATTGGATATGTACAGATTCCAGTGGGAATCGCTGGGCCATTGTTGTTAGACGGGAAGGAGTATTCCGTACCAATGGCTACCACCGAAGGTTGCCTGGTTGCTAGTACAAATAGAGGTTGTAAAGCGATTATGATGTCCGGTGGAGCTAACAGCGTGTTGTTGAGAGATGCAATGACGAGAGCACCAGTTATGAGATTCGCAACGGCAAAAAGAGCAGCGGAATTGAAGATGTACGTTGAGGATCCGGCGAATTTCGATACCTTAGCCTCTGTTTTCAACAAGTCAAGTAGATTCGGAAGGCTACAAAGTATCAAATGCGCCATTGCTGGTAAGAATCTCTATATGAGATTCTCTTGCAGTACTGGTGATGCTATGGGGATGAATATGGTTTCCAAAGGCGTTCAAAACGTTTTGGATTTTCTCCAGAATGATTTCCCTGACATGGATGTAATTGGCATATCTGGAAACTACTGTTCAGACAAGAAGCCTGCTGCTGTGAACTGGATCGAAGGGCGGGGTAAATCAGTGGTTTGTGAGGTTACAATCAAGGGTGATGTAGTGAAGAAGGTCCTCAAAACCGACGTTCAAGCCTTAGTTGAGCTTAACATGCTCAAGAATCTCACTGGTTCTGCCATGGCTGGAGCTCTTGGAGGGTTCAACGCCCATGCCAGTAACATAGTTTCGGCTATCTATATCGCAACAGGGCAAGATCCTGCACAGAACGTGGAGAGTTCTCACTGTATTACAATGATGGAAGCTGTGAATGATGGCCAAGATCTTCACGTCTCTGTTACCATGCCTTCCATCGAGGTGGGTACAGTTGGTGGAGGGACCCAGCTTGCTTCTCAATCTGCTTGTTTGAACTTACTTGGAGTTAAAGGGGCCAACAGAGAAGCTCCAGGATCTAACTCAAGGCTGTTAGCCACCATTGTAGCTGGCTCAGTTCTTGCAGGAGAGCTTTCTCTTATGTCTGCAATTTCAGCAGGACATCTTGTGAGGAGTCATATGAAGTACAATAGATCCAGTAGAGATGTCACTAAAGCTTCTTCCTCTTAA

Protein sequence

MDARRRRSSSLFKKLTADEPPVESMDKNPLKVKMAERQQHVHDDAVKASDVLPLPIYLTNAAFFTLFFSVVYFLLTRWREKIRSSTPLHVVTLSEMVAISAFIASFIYLLGFFGIDFVQSIFRPSHDVWTSEDDEVVLIKEDTRKVPCGAGIDCSIPVLAPPMPSVPKLVDPMPVSIDLTEEDEEIVKSVVAGTTPSYSLESKLGDCGRAAAIRREALQRVTGKSLSGLPLEGFDYASILGQCCEMPIGYVQIPVGIAGPLLLDGKEYSVPMATTEGCLVASTNRGCKAIMMSGGANSVLLRDAMTRAPVMRFATAKRAAELKMYVEDPANFDTLASVFNKSSRFGRLQSIKCAIAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEVTIKGDVVKKVLKTDVQALVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGQDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANREAPGSNSRLLATIVAGSVLAGELSLMSAISAGHLVRSHMKYNRSSRDVTKASSS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008448157.10.0e+0097.16PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cucumis melo][more]
XP_004139979.10.0e+0096.993-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Cucumis sativus] >KAE8646818.... [more]
XP_038876645.10.0e+0096.833-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Benincasa hispida][more]
KAG6604981.19.2e-31092.643-hydroxy-3-methylglutaryl-coenzyme A reductase 1, partial [Cucurbita argyrosper... [more]
XP_023534287.19.2e-31092.983-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cucurbita pepo subsp. pe... [more]
Match NameE-valueIdentityDescription
O649662.5e-25680.243-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Gossypium hirsutum OX=3635 ... [more]
P480211.9e-25376.693-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Camptotheca acuminata OX=1692... [more]
O649672.9e-24973.873-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Gossypium hirsutum OX=3635 ... [more]
U5JCC66.1e-24773.813-hydroxy-3-methylglutaryl coenzyme A reductase 2-B OS=Panax ginseng OX=4054 GN=... [more]
A0A0A1C9306.7e-24673.863-hydroxy-3-methylglutaryl coenzyme A reductase 2-A OS=Panax ginseng OX=4054 GN=... [more]
Match NameE-valueIdentityDescription
A0A1S3BJ200.0e+0097.163-hydroxy-3-methylglutaryl coenzyme A reductase OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0KA960.0e+0096.993-hydroxy-3-methylglutaryl coenzyme A reductase OS=Cucumis sativus OX=3659 GN=Cs... [more]
A0A6J1JA106.7e-31093.473-hydroxy-3-methylglutaryl coenzyme A reductase OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1G7U36.7e-31092.643-hydroxy-3-methylglutaryl coenzyme A reductase OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1I5F61.1e-30992.643-hydroxy-3-methylglutaryl coenzyme A reductase OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT1G76490.11.8e-23375.63hydroxy methylglutaryl CoA reductase 1 [more]
AT2G17370.17.9e-21872.103-hydroxy-3-methylglutaryl-CoA reductase 2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPRINTSPR00071HMGCOARDTASEcoord: 270..290
score: 91.87
coord: 361..379
score: 82.35
coord: 506..527
score: 83.81
coord: 401..426
score: 88.38
coord: 452..478
score: 78.32
coord: 243..264
score: 77.84
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPFAMPF00368HMG-CoA_redcoord: 211..587
e-value: 1.2E-144
score: 481.9
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPANTHERPTHR105723-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASEcoord: 33..597
IPR002202Hydroxymethylglutaryl-CoA reductase, class I/IIPROSITEPS50065HMG_COA_REDUCTASE_4coord: 183..587
score: 141.680099
IPR023074Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamilyGENE3D3.90.770.10coord: 254..582
e-value: 7.6E-143
score: 477.3
IPR009023Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamilyGENE3D3.30.70.420coord: 304..420
e-value: 7.6E-143
score: 477.3
IPR009023Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamilySUPERFAMILY55035NAD-binding domain of HMG-CoA reductasecoord: 305..420
IPR004554Hydroxymethylglutaryl-CoA reductase, eukaryotic/archaeal typeTIGRFAMTIGR00533TIGR00533coord: 183..587
e-value: 1.1E-161
score: 536.3
IPR004554Hydroxymethylglutaryl-CoA reductase, eukaryotic/archaeal typeCDDcd00643HMG-CoA_reductase_classIcoord: 184..587
e-value: 0.0
score: 689.675
IPR023282Hydroxymethylglutaryl-CoA reductase, N-terminalGENE3D1.10.3270.10coord: 179..253
e-value: 4.4E-22
score: 79.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR10572:SF443-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASEcoord: 33..597
IPR023076Hydroxymethylglutaryl-CoA reductase, class I/II, conserved sitePROSITEPS00066HMG_COA_REDUCTASE_1coord: 363..377
IPR023076Hydroxymethylglutaryl-CoA reductase, class I/II, conserved sitePROSITEPS01192HMG_COA_REDUCTASE_3coord: 572..585
IPR023076Hydroxymethylglutaryl-CoA reductase, class I/II, conserved sitePROSITEPS00318HMG_COA_REDUCTASE_2coord: 518..525
IPR009029Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamilySUPERFAMILY56542Substrate-binding domain of HMG-CoA reductasecoord: 180..577

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G036220.1CaUC02G036220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015936 coenzyme A metabolic process
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0016126 sterol biosynthetic process
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005778 peroxisomal membrane
molecular_function GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor