CaUC02G036130 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G036130
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionHistone deacetylase
LocationCiama_Chr02: 18966284 .. 18970281 (+)
RNA-Seq ExpressionCaUC02G036130
SyntenyCaUC02G036130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACAGGAGGCAATTCATTACCATCTGGGCCTGACGGAGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTCGGGAATTACTATTATGGGCAGGGTCATCCAATGAAGCCGCATCGCATCAGAATGACGCATGCCCTTCTTGCTCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCGAGAGATAAAGTCCTCTGCAGATTTCACGCTGATGATTATGTGGCATTTCTTAAAAGCATTACACCTGAAACGCAGCAAGACCAGCTGAGACAACTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTCTGTCAAACATATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAATCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAGTGCGAAGCATCTGGGTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAGCTCCTTAAACATTATGAGGTTCGTGTAGCCACTGAACTATTAACCATTAACTATTAGTTGATATTGGATGTTTTTTCTAATCCATCCTGAGGTTTGCTTAACTATTAACTGATGTTAAATCTTTCACTGGAAATTGGAATAACCTAAAGCTTTTGACGGAAGTCTGTATTTGTCCTGTGATATCATATCATATTAACGTTGTGCACCACTGATTAATGGTAAAGACTTTAACTTCACAAATAATGTTTCTGTAATCGTTAAGCACCATCACTTCATTTAGCATGGTTTTGGTTTAAATAAACTCATACGGGGATGTGATCTTGACAATTTGTGATGTTATTGTTCTTCGAATGTTGATCTTGTAATTTTATGTGCAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTCGAAGAGGCTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAATTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGATGGAATCGATGATGAGAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAGGTTTTTAAACCTGGCGCCGTTGTTCTCCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTAAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTATGAGGTACACATTTTGCTTTCAAACAATAATTTTTGTATGAGCACGTGTTGGTTTCTTCATGTATCTCTTGTTACGAAGTTTTGGAAAGTGCACCACTTGTTCATGACATAATTTAAGATTGTACTTGTGTCATTTTGAAATAGGAAGGGCAATGGAATAGAAGCATCATACTTGTTCATTACAACTCAATTAGTGACTAATGTGTCTCAAGTCTTCATAATTTAAAGGTTCTCTTCAGTTTATATCACACCAGTCAACTCAATTTAAACAAATATATATTGCACAAAGTTTGTGGTTGACTTCTTTTCTGAGCAGTGCACATGCATATTGAAGTTTCTGACCCGTGAGACATCAGACATTCCTTTCGATCCATCCCATTTCTTTTATGTTATAAGTATAACATGCCTATGTGTTCCAAATTAGAACCACAACTCATGTGGAGAGAACTGATAAACTCTGACTTCATAACAGTAGTGCATATTACCATTTCATGGTGGGGTATTTAGATTTTCTATGTAGTTACATTGTCATTGATGTTAGATTGTTATTCTAAAGTTCTTTCTCATATTTATATCATTTTTCTGATCGGCTGTTTGGCAATAAACTGTCACATGTAATGCAGACGGGAGTTGCACTAGGGATGGAGGTTGACGACAAAATGCCACAACATGAATATTATGAGTATTTCGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACGCACCAAATGTTGGAAGAAATACAGGGAAAGCTGCTTGAATACCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGTTGGTTAACATAATATAATTTGTTTCATTAGTTTTCTCTTATAATTTCTCCATTTTGTATGTTGTCACGTACACGGTTAGATGTAATTAGAAGAGTTCTTATTAATTGCACTATAGATATGATTTTGGATTGATTTCTTATAACATGAAATTATTCATTGACCTCATATTTCGCAAGCTTCAACAACTTTGAAAATTTTGCTATGATAAAGTTTATAACTATCACATTTCCTTTTACTAGTTAATTAGTTATTACTGATTACTAATCTAAGGTTTAGTAATATTTCTTAAAATACTTTTGGAGTTTGGATTTAACCTAGAGGTGATGGTTTGCTAGTCGCCTGGGCAGCTTGAGATATTCTATATATGATTGATTTTATTAGTAGTCTCCATTTCCAAGTATCTGGCAAAGGTTGAACAGTCGGAGGTTTCATGAATTGAGTTGATAAGCTTATTGAACTTTACTGGATGTGACTCCTTTCTGTCAAATGAGTCACATGTTGCCTGCTGGTTTTGGCATCGCTTTTCCTCATGTCTCTCAGTCTCAGACAACCTGTATGCAGTTCACGCTCATGGTTTGCTCCATAGGCAAATAGATCCAATGTGTCTAGTGTGATGTTGCTTGCTTGTAGGCCCCCCCCCCAATAGGAAATTGGAAACATGTTTAATTTGGCAATCTACTTCATCTATGATGTCATTTGTAATCCTCTTCAGGCAGAGGATGATCAGGAGGAGAGGGATGAAAGATGGGATCCAGACTCAGATATGGAAGTTGATGAAGAGAGGTATTTCGTTTTGTACTTATTTCGATTTTATTTTATATTTTCAATACTCTGTATCTTAACTTTTGCTTTCCACTTGCTGTTTGGACAGAAAACCCATCCCAAGCAGAGTTAAAAGAGAAACAGTTGAACCTGAAATCAAAGATCCGGTATGATCTAATTGAATGTAGTATGTCCTATTTTTGTTCATGCCCTTGCTCTGTTACATTTACCAATTCAAGCTACCATTCATGACATATTTTTTTCAGCATGCTTTTTGATTCTTGAGCTCTCTAATCTTTTTTTAGGAAGTTAATCCTGAGAGTGCTAGAGGTTTAGAAAAAGCAGCAGCTGAGGCTACAAGCGCAAAGGTGAAAAATCTCTGTAAAGTTGAAACCATGGAGTACTCTCTTTAAAAGTTTTGAAATAGGAAACTCTCACTTTTCATTGAAATGATGTCTAGAAGGTTTCCCCTTGAGTTGCTTTCTGCAGACCCCTTGACTTTAAGGAGTTATCTTCTTCTCTTGTACCTTCCATAGTCTTTAAAAAATTCTTTTTTTCCCAAAATAAAATAAAAATTGACATGTCATCTTAGTACTAATTTGTTTATATACACTGCACTTGCAGGCTTTAGATATAAGTTCTCTCAAAATCGAAGAGCCAGGCGTAAAACTCGAAGAGGCCAGCAAGCAGAATGACCAAATGTTCCCCTAGTCTTTGAGAAGGGGTGGAGGGGATCAAACACAGGAACAACTGACTCCAAGTAAATATAGGTGACTTTTGACATTCTTTGTTGCACAGATTTTTCAGACTTGGTACTTCTGGTGTAAGAATGAGCTGAATCATAAAAGTCCCGTCGTGCCGCAAGTGTTCGTGTATAAAAGTCTGGAGTTGAGATGGATAATCTTATTATTTAGACCAGGTATGAATGATTTGCTAAATGTTGTGGTGGCATTGGCAACCTTGACATGTTATTTGTTCTGAGGTTTCCATGTAAATCACCCTGAAAGAGAACAGAGGTTTCTGAAATCTGTAGGTCATGTGACTGGAGCTAATTAA

mRNA sequence

ATGGAGACAGGAGGCAATTCATTACCATCTGGGCCTGACGGAGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTCGGGAATTACTATTATGGGCAGGGTCATCCAATGAAGCCGCATCGCATCAGAATGACGCATGCCCTTCTTGCTCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCGAGAGATAAAGTCCTCTGCAGATTTCACGCTGATGATTATGTGGCATTTCTTAAAAGCATTACACCTGAAACGCAGCAAGACCAGCTGAGACAACTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTCTGTCAAACATATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAATCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAGTGCGAAGCATCTGGGTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAGCTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTCGAAGAGGCTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAATTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGATGGAATCGATGATGAGAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAGGTTTTTAAACCTGGCGCCGTTGTTCTCCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTAAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTATGAGACGGGAGTTGCACTAGGGATGGAGGTTGACGACAAAATGCCACAACATGAATATTATGAGTATTTCGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACGCACCAAATGTTGGAAGAAATACAGGGAAAGCTGCTTGAATACCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGCAGAGGATGATCAGGAGGAGAGGGATGAAAGATGGGATCCAGACTCAGATATGGAAGTTGATGAAGAGAGAAAACCCATCCCAAGCAGAGTTAAAAGAGAAACAGTTGAACCTGAAATCAAAGATCCGGAAGTTAATCCTGAGAGTGCTAGAGGTTTAGAAAAAGCAGCAGCTGAGGCTACAAGCGCAAAGTCTTTGAGAAGGGGTGGAGGGGATCAAACACAGGAACAACTGACTCCAAGTTTCCATGTAAATCACCCTGAAAGAGAACAGAGGTTTCTGAAATCTGTAGGTCATGTGACTGGAGCTAATTAA

Coding sequence (CDS)

ATGGAGACAGGAGGCAATTCATTACCATCTGGGCCTGACGGAGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTCGGGAATTACTATTATGGGCAGGGTCATCCAATGAAGCCGCATCGCATCAGAATGACGCATGCCCTTCTTGCTCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCGAGAGATAAAGTCCTCTGCAGATTTCACGCTGATGATTATGTGGCATTTCTTAAAAGCATTACACCTGAAACGCAGCAAGACCAGCTGAGACAACTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTCTGTCAAACATATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAATCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAGTGCGAAGCATCTGGGTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAGCTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTCGAAGAGGCTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAATTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGATGGAATCGATGATGAGAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAGGTTTTTAAACCTGGCGCCGTTGTTCTCCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTAAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTATGAGACGGGAGTTGCACTAGGGATGGAGGTTGACGACAAAATGCCACAACATGAATATTATGAGTATTTCGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACGCACCAAATGTTGGAAGAAATACAGGGAAAGCTGCTTGAATACCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGCAGAGGATGATCAGGAGGAGAGGGATGAAAGATGGGATCCAGACTCAGATATGGAAGTTGATGAAGAGAGAAAACCCATCCCAAGCAGAGTTAAAAGAGAAACAGTTGAACCTGAAATCAAAGATCCGGAAGTTAATCCTGAGAGTGCTAGAGGTTTAGAAAAAGCAGCAGCTGAGGCTACAAGCGCAAAGTCTTTGAGAAGGGGTGGAGGGGATCAAACACAGGAACAACTGACTCCAAGTTTCCATGTAAATCACCCTGAAAGAGAACAGAGGTTTCTGAAATCTGTAGGTCATGTGACTGGAGCTAATTAA

Protein sequence

METGGNSLPSGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVFKPLPARDKVLCRFHADDYVAFLKSITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHKVCDIAVNWSGGLHHAKKCEASGFCYVNDIVLAILELLKHYERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIMGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGMEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNTHQMLEEIQGKLLEYLSRLQHAPSVQFQERPPDTELPEAEDDQEERDERWDPDSDMEVDEERKPIPSRVKRETVEPEIKDPEVNPESARGLEKAAAEATSAKSLRRGGGDQTQEQLTPSFHVNHPEREQRFLKSVGHVTGAN
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038901934.12.3e-27698.29histone deacetylase 19-like [Benincasa hispida] >XP_038901935.1 histone deacetyl... [more]
XP_011656897.12.8e-27497.87histone deacetylase 19 [Cucumis sativus] >KGN46636.2 hypothetical protein Csa_00... [more]
XP_008448147.12.6e-27297.01PREDICTED: histone deacetylase 19 [Cucumis melo] >XP_008448148.1 PREDICTED: hist... [more]
XP_022140533.13.4e-27296.38histone deacetylase 19 [Momordica charantia][more]
KAG7010793.11.1e-27096.16Histone deacetylase 19 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
O224466.9e-24485.22Histone deacetylase 19 OS=Arabidopsis thaliana OX=3702 GN=HDA19 PE=1 SV=2[more]
Q7Y0Y81.1e-22079.16Histone deacetylase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC1 PE=1 SV=... [more]
P565211.6e-21678.01Probable histone deacetylase 19 OS=Zea mays OX=4577 PE=2 SV=1[more]
Q6YV048.3e-20576.05Histone deacetylase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC2 PE=2 SV=... [more]
Q7Y0Y61.7e-20275.39Histone deacetylase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDAC3 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
A0A0A0KA891.3e-27497.87Histone deacetylase OS=Cucumis sativus OX=3659 GN=Csa_6G116140 PE=3 SV=1[more]
A0A1S3BJX21.3e-27297.01Histone deacetylase OS=Cucumis melo OX=3656 GN=LOC103490434 PE=3 SV=1[more]
A0A6J1CI801.6e-27296.38Histone deacetylase OS=Momordica charantia OX=3673 GN=LOC111011171 PE=3 SV=1[more]
A0A5D3BPJ41.2e-27097.20Histone deacetylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G... [more]
A0A6J1FYY31.5e-27095.95Histone deacetylase OS=Cucurbita moschata OX=3662 GN=LOC111449108 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G38130.14.9e-24585.22histone deacetylase 1 [more]
AT4G38130.24.9e-24585.22histone deacetylase 1 [more]
AT5G63110.16.5e-17363.25histone deacetylase 6 [more]
AT3G44680.19.5e-14857.28histone deacetylase 9 [more]
AT5G35600.18.9e-13055.31histone deacetylase7 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003084Histone deacetylasePRINTSPR01271HISDACETLASEcoord: 240..258
score: 61.34
coord: 123..143
score: 62.09
coord: 38..55
score: 74.15
coord: 102..119
score: 82.69
coord: 71..89
score: 49.39
coord: 164..180
score: 76.92
coord: 223..236
score: 69.23
IPR003084Histone deacetylasePIRSFPIRSF037913HDAC_I_eukcoord: 5..467
e-value: 1.3E-213
score: 708.0
IPR000286Histone deacetylase familyPRINTSPR01270HDASUPERcoord: 145..168
score: 66.11
coord: 262..272
score: 59.27
coord: 177..192
score: 71.27
IPR037138Histone deacetylase domain superfamilyGENE3D3.40.800.20Histone deacetylase domaincoord: 15..388
e-value: 8.3E-141
score: 471.2
IPR023801Histone deacetylase domainPFAMPF00850Hist_deacetylcoord: 36..324
e-value: 2.0E-84
score: 283.6
NoneNo IPR availablePIRSRPIRSR037913-1PIRSR037913-1coord: 16..381
e-value: 1.2E-187
score: 621.2
NoneNo IPR availablePIRSRPIRSR037913-2PIRSR037913-2coord: 16..381
e-value: 1.2E-187
score: 621.2
NoneNo IPR availablePIRSRPIRSR037913-3PIRSR037913-3coord: 16..381
e-value: 1.2E-187
score: 621.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 467..482
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 418..449
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..504
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 397..417
NoneNo IPR availablePANTHERPTHR10625HISTONE DEACETYLASEcoord: 3..468
NoneNo IPR availablePANTHERPTHR10625:SF185HISTONE DEACETYLASE 19coord: 3..468
IPR023696Ureohydrolase domain superfamilySUPERFAMILY52768Arginase/deacetylasecoord: 17..381

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G036130.1CaUC02G036130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009294 DNA mediated transformation
biological_process GO:0016573 histone acetylation
biological_process GO:0070932 histone H3 deacetylation
biological_process GO:0009861 jasmonic acid and ethylene-dependent systemic resistance
biological_process GO:1901001 negative regulation of response to salt stress
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:1902459 positive regulation of stem cell population maintenance
biological_process GO:2000026 regulation of multicellular organismal development
biological_process GO:0016575 histone deacetylation
cellular_component GO:0000118 histone deacetylase complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0032041 NAD-dependent histone deacetylase activity (H3-K14 specific)
molecular_function GO:0004407 histone deacetylase activity