CaUC02G034830 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC02G034830
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionRab-GAP TBC domain-containing protein
LocationCiama_Chr02: 13008595 .. 13011803 (+)
RNA-Seq ExpressionCaUC02G034830
SyntenyCaUC02G034830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGGACTCAAAGCAAAAGAGATATTGCTCTAGAATTGCAAGCTCAGATTCCAATTCTAAGGCCCAGTATCCACGCGAGAAGGGCAAATATTACAGTTAAGTTTCAAGATCTGTATGGGTTCACAGTGGAAGGCAATGTGGATGATGTTAATGTGTTGAATGAAGTGAGGGAAAAGGTTAGACAACAGGGTCGTGTTTGGTGGGCATTGGAGGCTAGCAAAGGCGCTAATTGGTACTTGGAACCCTCTGTTTCTGAAGGGATCGCCCTCAAATCTTCCCTCAAATTATCAACCCTTGCGAATGCCATCACTTTGAAGAAGTTGATTAGGAAAGGAATTCCGCCGGTTCTTCGGCCCAAGGTTTGGTTCTCCTTATCCGGAGCTGCCAAGAAGAAATCCACGGTCCCCGATAGCTATTACAATGATTTGACCAAGGCCGTCGAAGGGAAAGTCACGCCGGCCACTAGGCAGATTGATCATGTATGTTCTTTTCGAATCATCCTTCATTTTCCATCACTATGTACTTTGCATCTAGTTCGGTTCTTCCTTTTACAGTTCTATTGAACATTTTGTATGCTTTGATTCTCATTAAACATGAATATCAGAATTGCATTTCATCTTGACCATAAGGAGGTGGATTAAATATTTTAGTAGTTAAGGGGCCTCAATTCTCTTTAATCTACTTAACAGGGATAAACTTGATGAGACAATAAATGGTGCAGATGGGATCTGGAGTTAAATTTGCTCTTTGGCTGGATGTGAATACAATTTAACGTTAATGAGCTTGATTGACTCTCATAATATTTGGATGATAATAAATTGTATGTTAGTTATTCTTGTTGGTGCTATTTTTGTAGTTCATAGTTTGAATTTGTGTGGGTATGTATATATACATATATTTTTCTTTGAGCTATTGTTTTGTTCTTGTAACCATAAGATGCATGTCCACATTGTGATTTAGTTTATCCTTCGGTTCATTTATATTGGGTAAAATCATTGGAAAACCTTAGGTGCAGATGGTATCTGGTATAATTTATCTCTTAATCTATAAATGATTGGAGGTTCATCACTTTATTTCATGTTGCTTTCAATCTTTTCAACTTGTTCCTGTGTTTTCTTTTAAAACGAATGCAGGACTTGCCTCGAACTTTCCCCGGTCATCCTTGGTTAGACACTCCGGAGGGTCATGCTGCTCTTCGACGTGTTCTTGTTGGGTATTCCTTCCGTGATTCTGATGTCGGATACTGTCAGGTGGGTTTGTTTTTCTCCTTCGCTCTAACATAACCATCTGCTCAGTAAATTAGCATTATTTTAGGACGGGTGTTTACCCATATACTTTACAACTGCGTATATGCATTCAGTATTCCACATCCTTTCTTCTCAGTCTAAAACTGGGATTCAACTCTGTTTCTCATCAGTTGCTGCAGTGGTCTATCCATGCTTAATTCATCTCTCTCCTTCTATCCCCGTCCTCCTCATCCTGTTGTTTCTCTAGAATATTGATTCAGAGGATGGGAATCATTTCTAGTTGCTATTTGTAAAAGACATGGTTCCATTGGTATTGATCTTTTTGTGGGCTGAATTAGACCTGTAATTTATTGAACACTGTGGAATTAATTCAGTTTATGTGCAGGGCTTAAACTATGTTGCTGCATTGTTATTGCTCGTGATGAAAACAGAAGAAGATGCTTTTTGGATGCTAGCTGTCCTCTTAGAAAATGTTTTAGTTAGCGACTGTTACACGACCAACTTGTCAGGATGTCATGTCGAGCAAAGGGTATTCAAAGATTTACTTACCAAAAAGTGTCCCAGGTGCCTAACTTTGTGTTGACATTCATTTACTGTCTAATAAGTATAAGCATTTTCATAAACTGGAGTGTAAATGCAGGATAGCTGCCCATTTGGAAGCATTGGATTTTGATGTCTCCCTTGTCGCCACAGAGTGGTTCCTGTGTCTTTTCTCTAAGAGCCTACCTTCTGAGGTTAGAACTATGCTCTCTCTGGGTGCCCATGCTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTNCTTCCCGAAAGCCGAAGGAGAGCGAGAGGGAGAGAGAGGTGTCGCAGTGGAGGAGGCCAGCGACGGCTGTGGCTGCGGGAGGGAGAGGAAAAAGAGAGAGGGCCGTGTCGGAGAGAGAGCGAGAGAGGGAGAGTTGCGGCAGAGAGAGGAAGTTATTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAGAAAAGAAAACTAAATTCCATTACAACAATTTTGAGCCACTTAATTCTTAAGCAGCTCAAACACCATAATATGTAGATTGTATACCCCTTAGCTGTAACGATATGGAATACTGGGAAATATCCAGTTTCTCACCATAGGAACCCAAATTTGAAAGTCCATCTTTTTGGGCAATAGTACTAAAATAGCTGAGAGTTATACAAGTCTGTCTGATGTGTATATATGAATAGATGTTTGTATTAGAATACTCTCTAACCATGTTTTAGTTATTAAAGAGACTGAAACATATACATGTTTGGGATCTTTTTCACAGACGACTCTACGTGTTTGGGACGTCCTTTTCTATGAGGGAGCAAAAGTTCTGTTTCATGTGGCTTTGGCTATCTTTAAGGTAATCGCTTGGAACTTGTAATCTATTGATGCTAGAGATTTCTTTTTTCACCATTTGTTGATAGTCAGATCAATGGCTGTTCTTGATCTCGAGCACTTCGTGATTATATCTATATTTGCAATTTCAGATGAAGGAAGGGGAGTTGCTTATAACTCATCATGTGGGAGATGTGATTAATATTCTACAAAAAACAACACATTACCTTTTTGATCCCGATGATCTGCTGACGGTAACTGTCTTTTCATTAACATCTTTGCAAAGTTCCATTTATATTCGTCTTGACATTGTTGTAGAGACTATGCCTCTGTACAATTGTAACATACCATGGTTTGAAGCTTCGACCTGTCAATTCATGTTTTTAGATATGGAATTAGTCCCACATCTGTTCCAATGACGGTTTGAAGAAAGCTTTTGGATTGTGAACTTGCAGGTAGCATATGACAAAATTGGATCAATGACTACCAACACAATATCAAAGCAAAGGAAAAAGCAGGAACCAGCAGTTATGGCTGAGCTTGATCAGAGATTGAGGCGACTAAATTCCCTTAAAGCAGATGACAAATAA

mRNA sequence

ATGTTTGGGACTCAAAGCAAAAGAGATATTGCTCTAGAATTGCAAGCTCAGATTCCAATTCTAAGGCCCAGTATCCACGCGAGAAGGGCAAATATTACAGTTAAGTTTCAAGATCTGTATGGGTTCACAGTGGAAGGCAATGTGGATGATGTTAATGTGTTGAATGAAGTGAGGGAAAAGGTTAGACAACAGGGTCGTGTTTGGTGGGCATTGGAGGCTAGCAAAGGCGCTAATTGGTACTTGGAACCCTCTGTTTCTGAAGGGATCGCCCTCAAATCTTCCCTCAAATTATCAACCCTTGCGAATGCCATCACTTTGAAGAAGTTGATTAGGAAAGGAATTCCGCCGGTTCTTCGGCCCAAGGTTTGGTTCTCCTTATCCGGAGCTGCCAAGAAGAAATCCACGGTCCCCGATAGCTATTACAATGATTTGACCAAGGCCGTCGAAGGGAAAGTCACGCCGGCCACTAGGCAGATTGATCATGACTTGCCTCGAACTTTCCCCGGTCATCCTTGGTTAGACACTCCGGAGGGTCATGCTGCTCTTCGACGTGTTCTTGTTGGGTATTCCTTCCGTGATTCTGATGTCGGATACTGTCAGGGCTTAAACTATGTTGCTGCATTGTTATTGCTCGTGATGAAAACAGAAGAAGATGCTTTTTGGATGCTAGCTGTCCTCTTAGAAAATGTTTTAGTTAGCGACTGTTACACGACCAACTTGTCAGGATGTCATGTCGAGCAAAGGGTATTCAAAGATTTACTTACCAAAAAGTGTCCCAGGATAGCTGCCCATTTGGAAGCATTGGATTTTGATGTCTCCCTTGTCGCCACAGAGTGGTTCCTGTGTCTTTTCTCTAAGAGCCTACCTTCTGAGACGACTCTACGTGTTTGGGACGTCCTTTTCTATGAGGGAGCAAAAGTTCTGTTTCATGTGGCTTTGGCTATCTTTAAGATGAAGGAAGGGGAGTTGCTTATAACTCATCATGTGGGAGATGTGATTAATATTCTACAAAAAACAACACATTACCTTTTTGATCCCGATGATCTGCTGACGGTAGCATATGACAAAATTGGATCAATGACTACCAACACAATATCAAAGCAAAGGAAAAAGCAGGAACCAGCAGTTATGGCTGAGCTTGATCAGAGATTGAGGCGACTAAATTCCCTTAAAGCAGATGACAAATAA

Coding sequence (CDS)

ATGTTTGGGACTCAAAGCAAAAGAGATATTGCTCTAGAATTGCAAGCTCAGATTCCAATTCTAAGGCCCAGTATCCACGCGAGAAGGGCAAATATTACAGTTAAGTTTCAAGATCTGTATGGGTTCACAGTGGAAGGCAATGTGGATGATGTTAATGTGTTGAATGAAGTGAGGGAAAAGGTTAGACAACAGGGTCGTGTTTGGTGGGCATTGGAGGCTAGCAAAGGCGCTAATTGGTACTTGGAACCCTCTGTTTCTGAAGGGATCGCCCTCAAATCTTCCCTCAAATTATCAACCCTTGCGAATGCCATCACTTTGAAGAAGTTGATTAGGAAAGGAATTCCGCCGGTTCTTCGGCCCAAGGTTTGGTTCTCCTTATCCGGAGCTGCCAAGAAGAAATCCACGGTCCCCGATAGCTATTACAATGATTTGACCAAGGCCGTCGAAGGGAAAGTCACGCCGGCCACTAGGCAGATTGATCATGACTTGCCTCGAACTTTCCCCGGTCATCCTTGGTTAGACACTCCGGAGGGTCATGCTGCTCTTCGACGTGTTCTTGTTGGGTATTCCTTCCGTGATTCTGATGTCGGATACTGTCAGGGCTTAAACTATGTTGCTGCATTGTTATTGCTCGTGATGAAAACAGAAGAAGATGCTTTTTGGATGCTAGCTGTCCTCTTAGAAAATGTTTTAGTTAGCGACTGTTACACGACCAACTTGTCAGGATGTCATGTCGAGCAAAGGGTATTCAAAGATTTACTTACCAAAAAGTGTCCCAGGATAGCTGCCCATTTGGAAGCATTGGATTTTGATGTCTCCCTTGTCGCCACAGAGTGGTTCCTGTGTCTTTTCTCTAAGAGCCTACCTTCTGAGACGACTCTACGTGTTTGGGACGTCCTTTTCTATGAGGGAGCAAAAGTTCTGTTTCATGTGGCTTTGGCTATCTTTAAGATGAAGGAAGGGGAGTTGCTTATAACTCATCATGTGGGAGATGTGATTAATATTCTACAAAAAACAACACATTACCTTTTTGATCCCGATGATCTGCTGACGGTAGCATATGACAAAATTGGATCAATGACTACCAACACAATATCAAAGCAAAGGAAAAAGCAGGAACCAGCAGTTATGGCTGAGCTTGATCAGAGATTGAGGCGACTAAATTCCCTTAAAGCAGATGACAAATAA

Protein sequence

MFGTQSKRDIALELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVRQQGRVWWALEASKGANWYLEPSVSEGIALKSSLKLSTLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPDSYYNDLTKAVEGKVTPATRQIDHDLPRTFPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYTTNLSGCHVEQRVFKDLLTKKCPRIAAHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKMKEGELLITHHVGDVINILQKTTHYLFDPDDLLTVAYDKIGSMTTNTISKQRKKQEPAVMAELDQRLRRLNSLKADDK
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053282.13.5e-22499.49TBC1 domain family member 2A [Cucumis melo var. makuwa] >TYK11875.1 TBC1 domain ... [more]
XP_038900967.16.0e-22499.49growth hormone-regulated TBC protein 1 [Benincasa hispida][more]
XP_004138606.11.7e-22399.49growth hormone-regulated TBC protein 1 [Cucumis sativus] >XP_011649971.1 growth ... [more]
XP_022140274.18.9e-22097.72growth hormone-regulated TBC protein 1 [Momordica charantia] >AKQ06194.1 TBC1 do... [more]
XP_022947368.12.2e-21897.47growth hormone-regulated TBC protein 1-like [Cucurbita moschata] >XP_023533059.1... [more]
Match NameE-valueIdentityDescription
Q9BYX22.5e-4737.79TBC1 domain family member 2A OS=Homo sapiens OX=9606 GN=TBC1D2 PE=1 SV=3[more]
Q28CB14.2e-4733.60TBC1 domain family member 2B OS=Xenopus tropicalis OX=8364 GN=tbc1d2b PE=2 SV=1[more]
B1AVH72.7e-4637.46TBC1 domain family member 2A OS=Mus musculus OX=10090 GN=Tbc1d2 PE=2 SV=1[more]
Q3U0J83.6e-4634.84TBC1 domain family member 2B OS=Mus musculus OX=10090 GN=Tbc1d2b PE=1 SV=2[more]
B5DFA11.0e-4537.46TBC1 domain family member 2A OS=Rattus norvegicus OX=10116 GN=Tbc1d2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7UC131.7e-22499.49TBC1 domain family member 2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A0A0LQ828.4e-22499.49Rab-GAP TBC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G406820... [more]
A0A0H4TH704.3e-22097.72TBC1 domain family member 2A OS=Momordica charantia OX=3673 GN=LOC111010987 PE=2... [more]
A0A6J1G6E21.1e-21897.47growth hormone-regulated TBC protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1I0U61.2e-21796.96growth hormone-regulated TBC protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
AT3G07890.19.3e-20789.45Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT3G07890.29.3e-20789.45Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT2G39280.14.5e-4434.12Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT2G39280.24.5e-4434.12Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT3G55020.15.9e-4435.85Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 377..395
NoneNo IPR availableGENE3D1.10.10.750coord: 99..128
e-value: 4.1E-6
score: 28.8
NoneNo IPR availableGENE3D1.10.472.80coord: 235..378
e-value: 3.6E-38
score: 132.7
NoneNo IPR availableGENE3D1.10.8.270putative rabgap domain of human tbc1 domain family member 14 like domainscoord: 129..234
e-value: 8.2E-33
score: 114.7
NoneNo IPR availablePANTHERPTHR22957TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINcoord: 1..369
NoneNo IPR availablePANTHERPTHR22957:SF589RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..369
IPR000195Rab-GTPase-TBC domainSMARTSM00164tbc_4coord: 110..327
e-value: 5.2E-61
score: 218.7
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 118..324
e-value: 2.1E-55
score: 187.7
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 113..304
score: 38.294468
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 105..264
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 240..355

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC02G034830.1CaUC02G034830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090630 activation of GTPase activity
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005096 GTPase activator activity