Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGATGTAATTCCTTGATTTCCTCCAACCCAGAACTCAATTCCACAAAAAATGGATGTTCAAGAAGTTGATTCGCGCTCCATCTTTCTGTTGGGTCCCTTCTCAAGCATTTCCTTAAAAAATCCTTCCCTTTCTCCGATAGAAAACTCGGAATTGCCGGCGATTCGCCGGAATATCCGATCCGGTACAGCACTGAAACAGGGTCGCCGGAGATGGGCCATGGTGAAGCGCCGGTGACCATTTCGATTAAAGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACTTCCGGTGCCATGAACATCGGCGTTCCGCCGATTACCGCCTCCGTCTCAGAAACCCATTTGGAGCAACCGAAATCAGCAATCTTCAAACCATCTCCACCGATTAAAATGTTCTTAGCTTTGATATCACAATGCACCAAGCCCTGTTTGTGCAAGTACTCCAAACCTCTAACAATTTGACGCGTGTAAAACGCCGCCGCCGCCTCCTTAATCCTGCCGCCGCGTCGGACAATTTCTTCGGTGAGAGTGCCACCGGCGACGTACTCCATGAAGAGATTGTACATTAGCTTCCCATTTTCTGTCGTTACATCGAATCCCCTGTAGCCCACAATTGAAGGGTGGGAAAGGGAAGAAAGAATCCTCTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGCTCGCCGGAGGAGGCGATGGAGGCGAGGTAG
mRNA sequence
ATGTGGATAAAACTCGGAATTGCCGGCGATTCGCCGGAATATCCGATCCGGTACAGCACTGAAACAGGGTCGCCGGAGATGGGCCATGGTGAAGCGCCGGTGACCATTTCGATTAAAGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACTTCCGGTGCCATGAACATCGGCGTTCCGCCGATTACCGCCTCCGTCTCAGAAACCCATTTGGAGCAACCGAAATCAGCAATCTTCAAACCATCTCCACCGATTAAAATCTTTGATATCACAATGCACCAAGCCCTGTTTGTGCAAGTACTCCAAACCTCTAACAATTTGACGCGTGTAAAACGCCGCCGCCGCCTCCTTAATCCTGCCGCCGCGTCGGACAATTTCTTCGGTGAGAGTGCCACCGGCGACGTACTCCATGAAGAGATTCCCACAATTGAAGGGTGGGAAAGGGAAGAAAGAATCCTCTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGCTCGCCGGAGGAGGCGATGGAGGCGAGGTAG
Coding sequence (CDS)
ATGTGGATAAAACTCGGAATTGCCGGCGATTCGCCGGAATATCCGATCCGGTACAGCACTGAAACAGGGTCGCCGGAGATGGGCCATGGTGAAGCGCCGGTGACCATTTCGATTAAAGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACTTCCGGTGCCATGAACATCGGCGTTCCGCCGATTACCGCCTCCGTCTCAGAAACCCATTTGGAGCAACCGAAATCAGCAATCTTCAAACCATCTCCACCGATTAAAATCTTTGATATCACAATGCACCAAGCCCTGTTTGTGCAAGTACTCCAAACCTCTAACAATTTGACGCGTGTAAAACGCCGCCGCCGCCTCCTTAATCCTGCCGCCGCGTCGGACAATTTCTTCGGTGAGAGTGCCACCGGCGACGTACTCCATGAAGAGATTCCCACAATTGAAGGGTGGGAAAGGGAAGAAAGAATCCTCTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGCTCGCCGGAGGAGGCGATGGAGGCGAGGTAG
Protein sequence
MWIKLGIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIGVPPITASVSETHLEQPKSAIFKPSPPIKIFDITMHQALFVQVLQTSNNLTRVKRRRRLLNPAAASDNFFGESATGDVLHEEIPTIEGWEREERILCSVFKKSDLRSSADLTANSSPEEAMEAR
Homology
BLAST of CaUC02G027850 vs. NCBI nr
Match:
KQK05071.2 (hypothetical protein BRADI_2g17802v3 [Brachypodium distachyon])
HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 70/179 (39.11%), Postives = 86/179 (48.04%), Query Frame = 0
Query: 19 STETGS-PEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIGVPPITASVSETH 78
ST + S P HG PV IS VHPSAHMS PC SPRATSGAMN GVPP +
Sbjct: 117 STPSSSMPVPFHGARPVAISTTVHPSAHMSAAGPCSSPRATSGAMNAGVPPRMGAQESAF 176
Query: 79 LEQPKSA-IFKPSPPIKIF----DITMHQALFVQVLQTSNNLTRVKRRRRLLNPAAASDN 138
LEQPKSA + +PSPPI F A + + + + P +AS+
Sbjct: 177 LEQPKSASLAQPSPPITTFLGFTSPWTSPAPWRYASPVARSAAYARTALSSSLPPSASEP 236
Query: 139 FFGESATGDVLHEEIPTIEGWEREERILCSVFKKSD---LRSSADLTANSSPEEAMEAR 189
S L E P + I CS+ K + + ADLTANSSP+ + AR
Sbjct: 237 PGANSRKSWTLGERSPAM--------IPCSLLKAAAAPMAAADADLTANSSPDASSAAR 287
BLAST of CaUC02G027850 vs. NCBI nr
Match:
PNT72662.1 (LOW QUALITY PROTEIN: hypothetical protein BRADI_2g47501v3 [Brachypodium distachyon])
HSP 1 Score: 86.7 bits (213), Expect = 2.4e-13
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = 0
Query: 6 GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
G +G S YPIR++ S G PV IS V PSAH S+ +PC SPRATSGAMN G
Sbjct: 97 GTSGTSAVYPIRWTAAKRSLMSLQGARPVAISTTVQPSAHTSDAVPCSSPRATSGAMNAG 156
Query: 66 VPPITASVSETHLEQPKS-AIFKPSPPIKIF 96
VPPI S T L QPKS ++ +PSPPI F
Sbjct: 157 VPPI-GSKESTGLAQPKSVSLARPSPPITTF 186
BLAST of CaUC02G027850 vs. NCBI nr
Match:
KAG2591034.1 (hypothetical protein PVAP13_5NG449500 [Panicum virgatum])
HSP 1 Score: 84.0 bits (206), Expect = 1.6e-12
Identity = 69/184 (37.50%), Postives = 82/184 (44.57%), Query Frame = 0
Query: 6 GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
G +G + YPIR+S S HG PV IS VHPSA S P SPRATSGAMN G
Sbjct: 130 GTSGTASVYPIRWSAARTSSASPHGARPVAISTTVHPSAQTSAAGPWSSPRATSGAMNAG 189
Query: 66 VPPITASVSETHLEQPKSA-IFKPSPPIKIFDITMHQALFVQVLQTSNNLTRVKRRRRLL 125
VPPI + PKSA + +PS PI F + L TS R R R
Sbjct: 190 VPPIARRAAPGARAHPKSASLARPSAPITTF----------RALTTSAAYARTARSPRAP 249
Query: 126 NPAAASDNFFGESATGDVLHEEIPTIEGWEREERILCSVFKKSDLRSSADLTANSSPEEA 185
AAS G + P R + + ++ADLTANSSP+ A
Sbjct: 250 PFRAASS---ASDPPGAYSRKSCPASTPRSR-------LSASAAAPAAADLTANSSPDAA 293
Query: 186 MEAR 189
AR
Sbjct: 310 SAAR 293
BLAST of CaUC02G027850 vs. NCBI nr
Match:
KAF2951824.1 (hypothetical protein DAI22_01g292300 [Oryza sativa Japonica Group])
HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 76/203 (37.44%), Postives = 99/203 (48.77%), Query Frame = 0
Query: 6 GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
GI+G + YPIR++ E S HG PV IS+ V P AH S PC SPRATSGAMN G
Sbjct: 75 GISGTASVYPIRWTAEKTSSMSLHGTRPVAISMIVQPRAHTSAAGPCSSPRATSGAMNAG 134
Query: 66 VPPITASVSETHLEQPKSA-IFKPSPPIKIFDITMHQALFV---QVLQTSNN---LTRVK 125
VPPI S S L PKSA + +PS P +F L TS + R
Sbjct: 135 VPPIGRSES-VLLAHPKSASLARPSAPTMMFLALTSPCTSEFPWSALATSAAYALMARSA 194
Query: 126 RRRRLLNPAAASD--------NFFGESAT------GDVLHEEIPTIEGWEREERILCSVF 185
RR LL ++ASD +++ A G + E+ P + R R CS
Sbjct: 195 RRPPLLAASSASDPPGANSRNSWYSPPAAARDPRQGTMCGEQSPDM---TRPSRRSCS-- 254
Query: 186 KKSDLRSSADLTANSSPEEAMEA 188
+ +ADLTA+SSP+ + +A
Sbjct: 255 --APPSPAADLTASSSPDASSDA 269
BLAST of CaUC02G027850 vs. NCBI nr
Match:
RCV26920.1 (hypothetical protein SETIT_5G284200v2 [Setaria italica])
HSP 1 Score: 80.1 bits (196), Expect = 2.2e-11
Identity = 48/91 (52.75%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 6 GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
G +G + YPIR+S S HG PV IS+ VHPSA S PC SPRATSGAMN G
Sbjct: 179 GTSGTASVYPIRWSAARTSSMSLHGARPVAISMTVHPSAQTSAAGPCSSPRATSGAMNAG 238
Query: 66 VPPITASVSETHLEQPKSA-IFKPSPPIKIF 96
VPPI A L PKSA + +PS PI F
Sbjct: 239 VPPI-ARAEPGALALPKSASLARPSAPITTF 268
BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match:
A0A0Q3G0L4 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g17802v3 PE=4 SV=2)
HSP 1 Score: 87.0 bits (214), Expect = 8.9e-14
Identity = 70/179 (39.11%), Postives = 86/179 (48.04%), Query Frame = 0
Query: 19 STETGS-PEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIGVPPITASVSETH 78
ST + S P HG PV IS VHPSAHMS PC SPRATSGAMN GVPP +
Sbjct: 117 STPSSSMPVPFHGARPVAISTTVHPSAHMSAAGPCSSPRATSGAMNAGVPPRMGAQESAF 176
Query: 79 LEQPKSA-IFKPSPPIKIF----DITMHQALFVQVLQTSNNLTRVKRRRRLLNPAAASDN 138
LEQPKSA + +PSPPI F A + + + + P +AS+
Sbjct: 177 LEQPKSASLAQPSPPITTFLGFTSPWTSPAPWRYASPVARSAAYARTALSSSLPPSASEP 236
Query: 139 FFGESATGDVLHEEIPTIEGWEREERILCSVFKKSD---LRSSADLTANSSPEEAMEAR 189
S L E P + I CS+ K + + ADLTANSSP+ + AR
Sbjct: 237 PGANSRKSWTLGERSPAM--------IPCSLLKAAAAPMAAADADLTANSSPDASSAAR 287
BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match:
A0A2K2DEF5 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47501v3 PE=4 SV=1)
HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = 0
Query: 6 GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
G +G S YPIR++ S G PV IS V PSAH S+ +PC SPRATSGAMN G
Sbjct: 97 GTSGTSAVYPIRWTAAKRSLMSLQGARPVAISTTVQPSAHTSDAVPCSSPRATSGAMNAG 156
Query: 66 VPPITASVSETHLEQPKS-AIFKPSPPIKIF 96
VPPI S T L QPKS ++ +PSPPI F
Sbjct: 157 VPPI-GSKESTGLAQPKSVSLARPSPPITTF 186
BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match:
A0A368RBF8 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_5G284200v2 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 48/91 (52.75%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 6 GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
G +G + YPIR+S S HG PV IS+ VHPSA S PC SPRATSGAMN G
Sbjct: 179 GTSGTASVYPIRWSAARTSSMSLHGARPVAISMTVHPSAQTSAAGPCSSPRATSGAMNAG 238
Query: 66 VPPITASVSETHLEQPKSA-IFKPSPPIKIF 96
VPPI A L PKSA + +PS PI F
Sbjct: 239 VPPI-ARAEPGALALPKSASLARPSAPITTF 268
BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match:
A0A0N7KRE0 (Os10g0130132 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0130132 PE=4 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 46/91 (50.55%), Postives = 53/91 (58.24%), Query Frame = 0
Query: 6 GIAGDSPEYP-IRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNI 65
G +G + YP IR + T S + HG PV IS+ V PSAH S PC SPRATSGAMN
Sbjct: 89 GRSGTASVYPIIRRAASTSSMSL-HGARPVAISMTVQPSAHTSAAGPCSSPRATSGAMNA 148
Query: 66 GVPPITASVSE---THLEQPKSA-IFKPSPP 92
GVPP T T L PKSA + +PS P
Sbjct: 149 GVPPSTGCFEPPGITTLAHPKSASLARPSAP 178
BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match:
C0P6G3 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 6.6e-09
Identity = 71/206 (34.47%), Postives = 88/206 (42.72%), Query Frame = 0
Query: 3 IKLGIAGDSPEYPIRYSTETGSPEMG-HGEAPVTISIKVHPSAHMSEEIPCFSPRATSGA 62
I+ G +G + YP R ST G P HG PV IS V PSA S PC SPR+TSGA
Sbjct: 40 IQRGASGTASVYPTR-STAAGRPSRSLHGARPVAISTTVQPSAQTSAAGPCPSPRSTSGA 99
Query: 63 MNIGVPPI---TASVSETHLEQPKSA-IFKPSPPIKIFD------ITMHQALFVQVLQTS 122
MN GVPP ++ L QPKSA + +PS P F T + + TS
Sbjct: 100 MNAGVPPTGRPGSAPPAAALAQPKSASMARPSAPTTTFRALTSPCTTERPWRYARPRATS 159
Query: 123 NNLTRVKRRRRLL--------NPAAASDNFFGESATGDVLHEEIPTIEGWEREERILCSV 182
R R L P A+ + T G +R+L S
Sbjct: 160 AAYAATARSSRPLLLAATSASEPPGANSRSSSHPPSAAARRPRQGTTCGDRSADRMLPSR 219
Query: 183 FKKSDLR--SSADLTANSSPEEAMEA 188
+ S R + ADLTA S+PE A A
Sbjct: 220 RRLSAARVPAGADLTAKSAPEAASAA 244
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KQK05071.2 | 1.8e-13 | 39.11 | hypothetical protein BRADI_2g17802v3 [Brachypodium distachyon] | [more] |
| PNT72662.1 | 2.4e-13 | 53.85 | LOW QUALITY PROTEIN: hypothetical protein BRADI_2g47501v3 [Brachypodium distachy... | [more] |
| KAG2591034.1 | 1.6e-12 | 37.50 | hypothetical protein PVAP13_5NG449500 [Panicum virgatum] | [more] |
| KAF2951824.1 | 2.7e-12 | 37.44 | hypothetical protein DAI22_01g292300 [Oryza sativa Japonica Group] | [more] |
| RCV26920.1 | 2.2e-11 | 52.75 | hypothetical protein SETIT_5G284200v2 [Setaria italica] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0Q3G0L4 | 8.9e-14 | 39.11 | Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g17802v3 P... | [more] |
| A0A2K2DEF5 | 1.2e-13 | 53.85 | Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47501v3 P... | [more] |
| A0A368RBF8 | 1.1e-11 | 52.75 | Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_5G284200v2 PE=4 SV=1 | [more] |
| A0A0N7KRE0 | 3.9e-09 | 50.55 | Os10g0130132 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0130132 PE... | [more] |
| C0P6G3 | 6.6e-09 | 34.47 | Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
