CaUC02G027850 (gene) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC02G027850
Type	gene
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Clat_adaptor_s domain-containing protein
Location	Ciama_Chr02: 2203268 .. 2204024 (+)
RNA-Seq Expression	CaUC02G027850
Synteny	CaUC02G027850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGATGTAATTCCTTGATTTCCTCCAACCCAGAACTCAATTCCACAAAAAATGGATGTTCAAGAAGTTGATTCGCGCTCCATCTTTCTGTTGGGTCCCTTCTCAAGCATTTCCTTAAAAAATCCTTCCCTTTCTCCGATAGAAAACTCGGAATTGCCGGCGATTCGCCGGAATATCCGATCCGGTACAGCACTGAAACAGGGTCGCCGGAGATGGGCCATGGTGAAGCGCCGGTGACCATTTCGATTAAAGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACTTCCGGTGCCATGAACATCGGCGTTCCGCCGATTACCGCCTCCGTCTCAGAAACCCATTTGGAGCAACCGAAATCAGCAATCTTCAAACCATCTCCACCGATTAAAATGTTCTTAGCTTTGATATCACAATGCACCAAGCCCTGTTTGTGCAAGTACTCCAAACCTCTAACAATTTGACGCGTGTAAAACGCCGCCGCCGCCTCCTTAATCCTGCCGCCGCGTCGGACAATTTCTTCGGTGAGAGTGCCACCGGCGACGTACTCCATGAAGAGATTGTACATTAGCTTCCCATTTTCTGTCGTTACATCGAATCCCCTGTAGCCCACAATTGAAGGGTGGGAAAGGGAAGAAAGAATCCTCTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGCTCGCCGGAGGAGGCGATGGAGGCGAGGTAG

mRNA sequence

ATGTGGATAAAACTCGGAATTGCCGGCGATTCGCCGGAATATCCGATCCGGTACAGCACTGAAACAGGGTCGCCGGAGATGGGCCATGGTGAAGCGCCGGTGACCATTTCGATTAAAGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACTTCCGGTGCCATGAACATCGGCGTTCCGCCGATTACCGCCTCCGTCTCAGAAACCCATTTGGAGCAACCGAAATCAGCAATCTTCAAACCATCTCCACCGATTAAAATCTTTGATATCACAATGCACCAAGCCCTGTTTGTGCAAGTACTCCAAACCTCTAACAATTTGACGCGTGTAAAACGCCGCCGCCGCCTCCTTAATCCTGCCGCCGCGTCGGACAATTTCTTCGGTGAGAGTGCCACCGGCGACGTACTCCATGAAGAGATTCCCACAATTGAAGGGTGGGAAAGGGAAGAAAGAATCCTCTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGCTCGCCGGAGGAGGCGATGGAGGCGAGGTAG

Coding sequence (CDS)

ATGTGGATAAAACTCGGAATTGCCGGCGATTCGCCGGAATATCCGATCCGGTACAGCACTGAAACAGGGTCGCCGGAGATGGGCCATGGTGAAGCGCCGGTGACCATTTCGATTAAAGTACACCCAAGTGCCCATATGTCAGAGGAAATCCCCTGTTTTTCCCCACGCGCCACTTCCGGTGCCATGAACATCGGCGTTCCGCCGATTACCGCCTCCGTCTCAGAAACCCATTTGGAGCAACCGAAATCAGCAATCTTCAAACCATCTCCACCGATTAAAATCTTTGATATCACAATGCACCAAGCCCTGTTTGTGCAAGTACTCCAAACCTCTAACAATTTGACGCGTGTAAAACGCCGCCGCCGCCTCCTTAATCCTGCCGCCGCGTCGGACAATTTCTTCGGTGAGAGTGCCACCGGCGACGTACTCCATGAAGAGATTCCCACAATTGAAGGGTGGGAAAGGGAAGAAAGAATCCTCTGCTCTGTTTTCAAGAAGTCTGATTTGAGAAGCTCGGCGGACTTGACGGCGAATAGCTCGCCGGAGGAGGCGATGGAGGCGAGGTAG

Protein sequence

MWIKLGIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIGVPPITASVSETHLEQPKSAIFKPSPPIKIFDITMHQALFVQVLQTSNNLTRVKRRRRLLNPAAASDNFFGESATGDVLHEEIPTIEGWEREERILCSVFKKSDLRSSADLTANSSPEEAMEAR

Homology

[Close]

BLAST of CaUC02G027850 vs. NCBI nr
Match: KQK05071.2 (hypothetical protein BRADI_2g17802v3 [Brachypodium distachyon])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 70/179 (39.11%), Postives = 86/179 (48.04%), Query Frame = 0


Query: 19  STETGS-PEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIGVPPITASVSETH 78
           ST + S P   HG  PV IS  VHPSAHMS   PC SPRATSGAMN GVPP   +     
Sbjct: 117 STPSSSMPVPFHGARPVAISTTVHPSAHMSAAGPCSSPRATSGAMNAGVPPRMGAQESAF 176

Query: 79  LEQPKSA-IFKPSPPIKIF----DITMHQALFVQVLQTSNNLTRVKRRRRLLNPAAASDN 138
           LEQPKSA + +PSPPI  F          A +      + +    +       P +AS+ 
Sbjct: 177 LEQPKSASLAQPSPPITTFLGFTSPWTSPAPWRYASPVARSAAYARTALSSSLPPSASEP 236

Query: 139 FFGESATGDVLHEEIPTIEGWEREERILCSVFKKSD---LRSSADLTANSSPEEAMEAR 189
               S     L E  P +        I CS+ K +      + ADLTANSSP+ +  AR
Sbjct: 237 PGANSRKSWTLGERSPAM--------IPCSLLKAAAAPMAAADADLTANSSPDASSAAR 287

[Close]

BLAST of CaUC02G027850 vs. NCBI nr
Match: PNT72662.1 (LOW QUALITY PROTEIN: hypothetical protein BRADI_2g47501v3 [Brachypodium distachyon])

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-13
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 6   GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
           G +G S  YPIR++    S     G  PV IS  V PSAH S+ +PC SPRATSGAMN G
Sbjct: 97  GTSGTSAVYPIRWTAAKRSLMSLQGARPVAISTTVQPSAHTSDAVPCSSPRATSGAMNAG 156

Query: 66  VPPITASVSETHLEQPKS-AIFKPSPPIKIF 96
           VPPI  S   T L QPKS ++ +PSPPI  F
Sbjct: 157 VPPI-GSKESTGLAQPKSVSLARPSPPITTF 186

[Close]

BLAST of CaUC02G027850 vs. NCBI nr
Match: KAG2591034.1 (hypothetical protein PVAP13_5NG449500 [Panicum virgatum])

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-12
Identity = 69/184 (37.50%), Postives = 82/184 (44.57%), Query Frame = 0


Query: 6   GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
           G +G +  YPIR+S    S    HG  PV IS  VHPSA  S   P  SPRATSGAMN G
Sbjct: 130 GTSGTASVYPIRWSAARTSSASPHGARPVAISTTVHPSAQTSAAGPWSSPRATSGAMNAG 189

Query: 66  VPPITASVSETHLEQPKSA-IFKPSPPIKIFDITMHQALFVQVLQTSNNLTRVKRRRRLL 125
           VPPI    +      PKSA + +PS PI  F          + L TS    R  R  R  
Sbjct: 190 VPPIARRAAPGARAHPKSASLARPSAPITTF----------RALTTSAAYARTARSPRAP 249

Query: 126 NPAAASDNFFGESATGDVLHEEIPTIEGWEREERILCSVFKKSDLRSSADLTANSSPEEA 185
              AAS         G    +  P      R       +   +   ++ADLTANSSP+ A
Sbjct: 250 PFRAASS---ASDPPGAYSRKSCPASTPRSR-------LSASAAAPAAADLTANSSPDAA 293

Query: 186 MEAR 189
             AR
Sbjct: 310 SAAR 293

[Close]

BLAST of CaUC02G027850 vs. NCBI nr
Match: KAF2951824.1 (hypothetical protein DAI22_01g292300 [Oryza sativa Japonica Group])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 76/203 (37.44%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 6   GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
           GI+G +  YPIR++ E  S    HG  PV IS+ V P AH S   PC SPRATSGAMN G
Sbjct: 75  GISGTASVYPIRWTAEKTSSMSLHGTRPVAISMIVQPRAHTSAAGPCSSPRATSGAMNAG 134

Query: 66  VPPITASVSETHLEQPKSA-IFKPSPPIKIFDITMHQALFV---QVLQTSNN---LTRVK 125
           VPPI  S S   L  PKSA + +PS P  +F               L TS     + R  
Sbjct: 135 VPPIGRSES-VLLAHPKSASLARPSAPTMMFLALTSPCTSEFPWSALATSAAYALMARSA 194

Query: 126 RRRRLLNPAAASD--------NFFGESAT------GDVLHEEIPTIEGWEREERILCSVF 185
           RR  LL  ++ASD        +++   A       G +  E+ P +    R  R  CS  
Sbjct: 195 RRPPLLAASSASDPPGANSRNSWYSPPAAARDPRQGTMCGEQSPDM---TRPSRRSCS-- 254

Query: 186 KKSDLRSSADLTANSSPEEAMEA 188
             +    +ADLTA+SSP+ + +A
Sbjct: 255 --APPSPAADLTASSSPDASSDA 269

[Close]

BLAST of CaUC02G027850 vs. NCBI nr
Match: RCV26920.1 (hypothetical protein SETIT_5G284200v2 [Setaria italica])

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-11
Identity = 48/91 (52.75%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 6   GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
           G +G +  YPIR+S    S    HG  PV IS+ VHPSA  S   PC SPRATSGAMN G
Sbjct: 179 GTSGTASVYPIRWSAARTSSMSLHGARPVAISMTVHPSAQTSAAGPCSSPRATSGAMNAG 238

Query: 66  VPPITASVSETHLEQPKSA-IFKPSPPIKIF 96
           VPPI A      L  PKSA + +PS PI  F
Sbjct: 239 VPPI-ARAEPGALALPKSASLARPSAPITTF 268

[Close]

BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match: A0A0Q3G0L4 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g17802v3 PE=4 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 8.9e-14
Identity = 70/179 (39.11%), Postives = 86/179 (48.04%), Query Frame = 0


Query: 19  STETGS-PEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIGVPPITASVSETH 78
           ST + S P   HG  PV IS  VHPSAHMS   PC SPRATSGAMN GVPP   +     
Sbjct: 117 STPSSSMPVPFHGARPVAISTTVHPSAHMSAAGPCSSPRATSGAMNAGVPPRMGAQESAF 176

Query: 79  LEQPKSA-IFKPSPPIKIF----DITMHQALFVQVLQTSNNLTRVKRRRRLLNPAAASDN 138
           LEQPKSA + +PSPPI  F          A +      + +    +       P +AS+ 
Sbjct: 177 LEQPKSASLAQPSPPITTFLGFTSPWTSPAPWRYASPVARSAAYARTALSSSLPPSASEP 236

Query: 139 FFGESATGDVLHEEIPTIEGWEREERILCSVFKKSD---LRSSADLTANSSPEEAMEAR 189
               S     L E  P +        I CS+ K +      + ADLTANSSP+ +  AR
Sbjct: 237 PGANSRKSWTLGERSPAM--------IPCSLLKAAAAPMAAADADLTANSSPDASSAAR 287

[Close]

BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match: A0A2K2DEF5 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47501v3 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 6   GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
           G +G S  YPIR++    S     G  PV IS  V PSAH S+ +PC SPRATSGAMN G
Sbjct: 97  GTSGTSAVYPIRWTAAKRSLMSLQGARPVAISTTVQPSAHTSDAVPCSSPRATSGAMNAG 156

Query: 66  VPPITASVSETHLEQPKS-AIFKPSPPIKIF 96
           VPPI  S   T L QPKS ++ +PSPPI  F
Sbjct: 157 VPPI-GSKESTGLAQPKSVSLARPSPPITTF 186

[Close]

BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match: A0A368RBF8 (Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_5G284200v2 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 48/91 (52.75%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 6   GIAGDSPEYPIRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNIG 65
           G +G +  YPIR+S    S    HG  PV IS+ VHPSA  S   PC SPRATSGAMN G
Sbjct: 179 GTSGTASVYPIRWSAARTSSMSLHGARPVAISMTVHPSAQTSAAGPCSSPRATSGAMNAG 238

Query: 66  VPPITASVSETHLEQPKSA-IFKPSPPIKIF 96
           VPPI A      L  PKSA + +PS PI  F
Sbjct: 239 VPPI-ARAEPGALALPKSASLARPSAPITTF 268

[Close]

BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match: A0A0N7KRE0 (Os10g0130132 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0130132 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.9e-09
Identity = 46/91 (50.55%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 6   GIAGDSPEYP-IRYSTETGSPEMGHGEAPVTISIKVHPSAHMSEEIPCFSPRATSGAMNI 65
           G +G +  YP IR +  T S  + HG  PV IS+ V PSAH S   PC SPRATSGAMN 
Sbjct: 89  GRSGTASVYPIIRRAASTSSMSL-HGARPVAISMTVQPSAHTSAAGPCSSPRATSGAMNA 148

Query: 66  GVPPITASVSE---THLEQPKSA-IFKPSPP 92
           GVPP T        T L  PKSA + +PS P
Sbjct: 149 GVPPSTGCFEPPGITTLAHPKSASLARPSAP 178

[Close]

BLAST of CaUC02G027850 vs. ExPASy TrEMBL
Match: C0P6G3 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 6.6e-09
Identity = 71/206 (34.47%), Postives = 88/206 (42.72%), Query Frame = 0


Query: 3   IKLGIAGDSPEYPIRYSTETGSPEMG-HGEAPVTISIKVHPSAHMSEEIPCFSPRATSGA 62
           I+ G +G +  YP R ST  G P    HG  PV IS  V PSA  S   PC SPR+TSGA
Sbjct: 40  IQRGASGTASVYPTR-STAAGRPSRSLHGARPVAISTTVQPSAQTSAAGPCPSPRSTSGA 99

Query: 63  MNIGVPPI---TASVSETHLEQPKSA-IFKPSPPIKIFD------ITMHQALFVQVLQTS 122
           MN GVPP     ++     L QPKSA + +PS P   F        T     + +   TS
Sbjct: 100 MNAGVPPTGRPGSAPPAAALAQPKSASMARPSAPTTTFRALTSPCTTERPWRYARPRATS 159

Query: 123 NNLTRVKRRRRLL--------NPAAASDNFFGESATGDVLHEEIPTIEGWEREERILCSV 182
                  R  R L         P  A+        +         T  G    +R+L S 
Sbjct: 160 AAYAATARSSRPLLLAATSASEPPGANSRSSSHPPSAAARRPRQGTTCGDRSADRMLPSR 219

Query: 183 FKKSDLR--SSADLTANSSPEEAMEA 188
            + S  R  + ADLTA S+PE A  A
Sbjct: 220 RRLSAARVPAGADLTAKSAPEAASAA 244

The following BLAST results are available for this feature:

BLAST of CaUC02G027850 vs. NCBI nr


Match Name	E-value	Identity	Description
KQK05071.2	1.8e-13	39.11	hypothetical protein BRADI_2g17802v3 [Brachypodium distachyon]	[more]
PNT72662.1	2.4e-13	53.85	LOW QUALITY PROTEIN: hypothetical protein BRADI_2g47501v3 [Brachypodium distachy...	[more]
KAG2591034.1	1.6e-12	37.50	hypothetical protein PVAP13_5NG449500 [Panicum virgatum]	[more]
KAF2951824.1	2.7e-12	37.44	hypothetical protein DAI22_01g292300 [Oryza sativa Japonica Group]	[more]
RCV26920.1	2.2e-11	52.75	hypothetical protein SETIT_5G284200v2 [Setaria italica]	[more]

BLAST of CaUC02G027850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC02G027850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0Q3G0L4	8.9e-14	39.11	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g17802v3 P...	[more]
A0A2K2DEF5	1.2e-13	53.85	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g47501v3 P...	[more]
A0A368RBF8	1.1e-11	52.75	Uncharacterized protein OS=Setaria italica OX=4555 GN=SETIT_5G284200v2 PE=4 SV=1	[more]
A0A0N7KRE0	3.9e-09	50.55	Os10g0130132 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0130132 PE...	[more]
C0P6G3	6.6e-09	34.47	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of CaUC02G027850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CaUC02G027850.1	CaUC02G027850.1	mRNA