Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATGTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG
mRNA sequence
ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATGTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG
Coding sequence (CDS)
ATGAAGTTGGTGGTGCAAAATTTGACTGGCTCTCTGTTCTACGTCGAGGTTGAAGACGATGCGACTGTTTATGATCTTCGAACTCAGATCACTGCCCATCACAACCTCCCTTCTGACCGTCTGATCTTCATTCCCGACCACAATCGTGACCGTCTGATCTGCGACGGCGATGATGGAATCTCGCTCGTTGATGTCGGTGTCCGAGATGGGTCCCACATTTACATCTTTTTCTGTCCGCTTGATGATAATGACGGCGATGATCTTGAAGCTCGCCAACTGTTCTTTACTTGTCCCGATCTTCTTCTCTTTTAG
Protein sequence
MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGISLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF
Homology
BLAST of CaUC02G027620 vs. NCBI nr
Match:
XP_022989504.1 (uncharacterized protein LOC111486561 [Cucurbita maxima])
HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDGI
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60
Query: 61 SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVD G+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103
BLAST of CaUC02G027620 vs. NCBI nr
Match:
KGN43536.1 (hypothetical protein Csa_020453 [Cucumis sativus])
HSP 1 Score: 162.2 bits (409), Expect = 2.5e-36
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH HNLPS RLIFIPDHN +RLI D
Sbjct: 1 MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
Query: 61 DGISLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
DGISLVD G+RDGSHIYIFF PL D+DGDD+EAR+ FFT DLLLF
Sbjct: 61 DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107
BLAST of CaUC02G027620 vs. NCBI nr
Match:
KAG6589175.1 (hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 160.2 bits (404), Expect = 9.3e-36
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDG
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60
Query: 61 SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVD G+RDGS IY+FFCPLDD DDL+ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYVFFCPLDDEGVDDLDARQLFFNCPDLLLF 103
BLAST of CaUC02G027620 vs. NCBI nr
Match:
XP_022930696.1 (uncharacterized protein LOC111437093 [Cucurbita moschata])
HSP 1 Score: 158.7 bits (400), Expect = 2.7e-35
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDG
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60
Query: 61 SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVD G+RDGS IY+FFCPLD+ DDL+ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103
BLAST of CaUC02G027620 vs. NCBI nr
Match:
XP_022136124.1 (uncharacterized protein LOC111007894 [Momordica charantia])
HSP 1 Score: 131.0 bits (328), Expect = 6.1e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN LPSDRLIFI D N R I DD
Sbjct: 1 MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
Query: 61 GISLVDVGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
G SLVD GV+DGSHIYIFF PLD D+ GDD + +R FFTC ++LLF
Sbjct: 61 GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114
BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match:
A0A6J1JPI4 (uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561 PE=4 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDGI
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISVADDGI 60
Query: 61 SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVD G+RDGS IYIFFCPLDD+ GDD++ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYIFFCPLDDDGGDDVDARQLFFNCPDLLLF 103
BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match:
A0A0A0K6V6 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044270 PE=4 SV=1)
HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAH---HNLPSDRLIFIPDHNRDRLICDGD 60
MKLVVQNLTGSLF+VEVEDDATV DLRTQI AH HNLPS RLIFIPDHN +RLI D
Sbjct: 1 MKLVVQNLTGSLFFVEVEDDATVSDLRTQINAHPHQHNLPSHRLIFIPDHNPERLISQVD 60
Query: 61 DGISLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFT-CPDLLLF 104
DGISLVD G+RDGSHIYIFF PL D+DGDD+EAR+ FFT DLLLF
Sbjct: 61 DGISLVDFGLRDGSHIYIFFSPLHDDDGDDIEARRFFFTSSSDLLLF 107
BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match:
A0A6J1ERN4 (uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC111437093 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
MKLV +NLTGSLFYVEV+D ATV DLRT+I++ +LPSDRL+F+PDH+R RLI DDG
Sbjct: 1 MKLVAENLTGSLFYVEVDDGATVLDLRTEISSQQSLPSDRLLFVPDHDRGRLISAADDGT 60
Query: 61 SLVDVGVRDGSHIYIFFCPLDDNDGDDLEARQLFFTCPDLLLF 104
SLVD G+RDGS IY+FFCPLD+ DDL+ARQLFF CPDLLLF
Sbjct: 61 SLVDFGLRDGSLIYVFFCPLDEEGVDDLDARQLFFNCPDLLLF 103
BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match:
A0A6J1C3E5 (uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007894 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 2.9e-27
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHN--LPSDRLIFIPDHNRDRLICDGDD 60
MKL V+NLTGSLF+++V+DDATV DL+ +I+AHHN LPSDRLIFI D N R I DD
Sbjct: 1 MKLAVENLTGSLFHIQVKDDATVSDLKAEISAHHNNDLPSDRLIFIADDNPGRPISKDDD 60
Query: 61 GISLVDVGVRDGSHIYIFFCPLD-----DNDGDDLE----ARQLFFTCPDLLLF 104
G SLVD GV+DGSHIYIFF PLD D+ GDD + +R FFTC ++LLF
Sbjct: 61 GFSLVDCGVKDGSHIYIFFHPLDHEDDRDHGGDDPDQDHHSRLFFFTCHNILLF 114
BLAST of CaUC02G027620 vs. ExPASy TrEMBL
Match:
A0A2N9FN61 (Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16475 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 3.5e-20
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIFIPDHNRDRLICDGDDGI 60
M++VV+NLTG+LFY+E+ +DAT+ DL+ +I NLPSDRLI I D NR + D DG+
Sbjct: 5 MRVVVENLTGTLFYIELGNDATLADLKKEIEDQQNLPSDRLILILDTNRSHRMNDDGDGV 64
Query: 61 SLVDVGVRDGSHIYIFFCPLDDNDGDDL 89
SLVD GV+DGSHIY+FF PLDD D+
Sbjct: 65 SLVDCGVKDGSHIYLFFNPLDDGSTHDV 92
BLAST of CaUC02G027620 vs. TAIR 10
Match:
AT2G32360.1 (Ubiquitin-like superfamily protein )
HSP 1 Score: 58.9 bits (141), Expect = 2.7e-09
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 1 MKLVVQNLTGSLFYVEVEDDATVYDLRTQITAHHNLPSDRLIF-IPDHNRDRLICDGDDG 60
MK+ V+ +TG+ +V +DATV ++ +I LP RLI I D RL+ + +D
Sbjct: 1 MKVSVEIITGTFIDTDVSEDATVKQMKEKIAVEVKLPVTRLILVIGDEETRRLVMEDEDD 60
Query: 61 ISLVDVGVRDGSHIYIFF 78
+ L D+GV + SHIY+FF
Sbjct: 61 MMLRDLGVGEDSHIYLFF 78
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022989504.1 | 3.8e-37 | 74.76 | uncharacterized protein LOC111486561 [Cucurbita maxima] | [more] |
| KGN43536.1 | 2.5e-36 | 78.50 | hypothetical protein Csa_020453 [Cucumis sativus] | [more] |
| KAG6589175.1 | 9.3e-36 | 72.82 | hypothetical protein SDJN03_17740, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022930696.1 | 2.7e-35 | 71.84 | uncharacterized protein LOC111437093 [Cucurbita moschata] | [more] |
| XP_022136124.1 | 6.1e-27 | 61.40 | uncharacterized protein LOC111007894 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1JPI4 | 1.8e-37 | 74.76 | uncharacterized protein LOC111486561 OS=Cucurbita maxima OX=3661 GN=LOC111486561... | [more] |
| A0A0A0K6V6 | 1.2e-36 | 78.50 | Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G044... | [more] |
| A0A6J1ERN4 | 1.3e-35 | 71.84 | uncharacterized protein LOC111437093 OS=Cucurbita moschata OX=3662 GN=LOC1114370... | [more] |
| A0A6J1C3E5 | 2.9e-27 | 61.40 | uncharacterized protein LOC111007894 OS=Momordica charantia OX=3673 GN=LOC111007... | [more] |
| A0A2N9FN61 | 3.5e-20 | 57.95 | Ubiquitin-like domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G32360.1 | 2.7e-09 | 39.74 | Ubiquitin-like superfamily protein | [more] |
